Clone BO14956 Report

Search the DGRC for BO14956

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG11999-RA
Protein status:BO14956.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO14956.3prime Sequence

680 bp (650 high quality bases) assembled on 2006-05-29

> BO14956.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCGAGTGGGCGTACTCGTCGTGCGTTG
AGCTCTTCTCCTTGGGCACGATAAAGAGGCCCTCCGCCGTGGTCCAGCGC
GTTCCGTGCTGCGGCTTGTGGACGCCAACGATTTCCATTTGGCCGGAGAT
GGGTCTGCCATAGGAGCGGCCGGACATGCCCAGGTACATGCCGGTGTCGA
TGTGGCGCAGCCTAACGTGGGCACTGCGCATCCAGTTCTCGTTGGAGCAG
ACCACCTCCCAGTGGTCGCCGGTGTCGCCGAGTCCATCCGTTCCGTACGC
GGACACCTCCTGCTCGCCTGAGAGCGGCGACGAAAAGTGGTGCGAGTGCA
GGTTCTTCTTGGTGGACAGGTGCTCCAGTCGCACGGTGGATCCGCAGGCG
ATGGGCTCGCCCCTTTCACAAAGCTCGCCGGTCTGCGCCTTGATCACCCA
GTGGCTGTTCACGTCCTCCTTCTGCTCCACGCCCGTCACCGACTGCTGCC
CGGAACCAGATCCGTACTTGACGTCGTGGGAGTGCAGGCGGAAGGCGTAG
TCCGAGTTGAGCAGCTTCAGGATGGAGCCGCAGGTGACCACGTTGGATTC
GGTGGCGGCTCCCCTGGAAATGCTGCCTACCAGCGCCAGTCCTGTAAGAA
GTAGTATGTGCTGCATGTCGACTGATAACT

BO14956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-PA 651 CG11999-RA 1..648 666..19 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-RA 904 CG11999-RA 127..774 666..19 3240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5353847..5354434 19..606 2940 100 Plus
3R 32079331 3R 5354561..5354621 606..666 305 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:17:16 has no hits.

BO14956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:11 Download gff for BO14956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-PA 1..651 18..666 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:25 Download gff for BO14956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-PA 1..651 18..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:03:36 Download gff for BO14956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 19..666 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:08 Download gff for BO14956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 19..666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:08 Download gff for BO14956.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5353847..5354433 19..605 100 <- Plus
3R 5354561..5354621 606..666 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:03:36 Download gff for BO14956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1179569..1180155 19..605 100 <- Plus
arm_3R 1180283..1180343 606..666 100   Plus

BO14956.5prime Sequence

680 bp (620 high quality bases) assembled on 2006-05-29

> BO14956.5prime
GAAGTTATCAGTCGACATGCAGCACATACTACTTCTTACAGGACTGGCGC
TGGTAGGCAGCATTTCCAGGGGAGCCGCCACCGAATCCAACGTGGTCACC
TGCGGCTCCATCCTGAAGCTGCTCAACTCGGACTACGCCTTCCGCCTGCA
CTCCCACGACGTCAAGTACGGATCTGGTTCCGGGCAGCAGTCGGTGACGG
GCGTGGAGCAGAAGGAGGACGTGAACAGCCACTGGGTGATCAAGGCGCAG
ACCGGCGAGCTTTGTGAAAGGGGCGAGCCCATCGCCTGCGGATCCACCGT
GCGACTGGAGCACCTGTCCACCAAGAAGAACCTGCACTCGCACCACTTTT
CGTCGCCGCTCTCAGGCGAGCAGGAGGTGTCCGCGTACGGAACGGATGGA
CTCGGCGACACCGGCGACCACTGGGAGGTGGTCTGCTCCAACGAGAACTG
GATGCGCAGTGCCCACGTTAGGCTGCGCCACATCGACACCGGCATGTACC
TGGGCATGTCCGGCCGCTCCTATGGCAGACCCATCTCCGGCCAAATGGAA
ATCGTTGGCGTCCACAAGCCGCAGCACGGAACGCGCTGGACCACGGCGGA
GGGCCTCTTTATCGTGCCCAAGGAGAAGAGCTCAACGCACGACGAGTACG
CCCACTCGGAGCTGGCAAGCTTTCTAGACC

BO14956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-PA 651 CG11999-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-RA 904 CG11999-RA 127..774 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5353847..5354434 664..77 2940 100 Minus
3R 32079331 3R 5354561..5354621 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:21:08 has no hits.

BO14956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:12 Download gff for BO14956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-PA 1..651 17..665 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:27 Download gff for BO14956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-PA 1..651 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:57 Download gff for BO14956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 17..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:49 Download gff for BO14956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 17..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:49 Download gff for BO14956.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5353847..5354433 78..664 100 <- Minus
3R 5354561..5354621 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:57 Download gff for BO14956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1179569..1180155 78..664 100 <- Minus
arm_3R 1180283..1180343 17..77 100   Minus

BO14956.complete Sequence

682 bp (682 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633298

> BO14956.complete
GAAGTTATCAGTCGACATGCAGCACATACTACTTCTTACAGGACTGGCGC
TGGTAGGCAGCATTTCCAGGGGAGCCGCCACCGAATCCAACGTGGTCACC
TGCGGCTCCATCCTGAAGCTGCTCAACTCGGACTACGCCTTCCGCCTGCA
CTCCCACGACGTCAAGTACGGATCTGGTTCCGGGCAGCAGTCGGTGACGG
GCGTGGAGCAGAAGGAGGACGTGAACAGCCACTGGGTGATCAAGGCGCAG
ACCGGCGAGCTTTGTGAAAGGGGCGAGCCCATCGCCTGCGGATCCACCGT
GCGACTGGAGCACCTGTCCACCAAGAAGAACCTGCACTCGCACCACTTTT
CGTCGCCGCTCTCAGGCGAGCAGGAGGTGTCCGCGTACGGAACGGATGGA
CTCGGCGACACCGGCGACCACTGGGAGGTGGTCTGCTCCAACGAGAACTG
GATGCGCAGTGCCCACGTTAGGCTGCGCCACATCGACACCGGCATGTACC
TGGGCATGTCCGGCCGCTCCTATGGCAGACCCATCTCCGGCCAAATGGAA
ATCGTTGGCGTCCACAAGCCGCAGCACGGAACGCGCTGGACCACGGCGGA
GGGCCTCTTTATCGTGCCCAAGGAGAAGAGCTCAACGCACGACGAGTACG
CCCACTCGGAGCTGGCAAGCTTTCTAGACCAT

BO14956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-RA 651 CG11999-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-RA 904 CG11999-RA 127..774 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5353847..5354434 664..77 2940 100 Minus
3R 32079331 3R 5354561..5354621 77..17 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:55:20 has no hits.

BO14956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:52 Download gff for BO14956.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 1..651 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:26 Download gff for BO14956.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:24 Download gff for BO14956.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:52 Download gff for BO14956.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 17..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:06 Download gff for BO14956.complete
Subject Subject Range Query Range Percent Splice Strand
CG11999-RA 127..774 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:06 Download gff for BO14956.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5354561..5354621 17..77 100   Minus
3R 5353845..5354433 78..666 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:24 Download gff for BO14956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1180283..1180343 17..77 100   Minus
arm_3R 1179567..1180155 78..666 99 <- Minus

BO14956.pep Sequence

Translation from 16 to 682

> BO14956.pep
MQHILLLTGLALVGSISRGAATESNVVTCGSILKLLNSDYAFRLHSHDVK
YGSGSGQQSVTGVEQKEDVNSHWVIKAQTGELCERGEPIACGSTVRLEHL
STKKNLHSHHFSSPLSGEQEVSAYGTDGLGDTGDHWEVVCSNENWMRSAH
VRLRHIDTGMYLGMSGRSYGRPISGQMEIVGVHKPQHGTRWTTAEGLFIV
PKEKSSTHDEYAHSELASFLDH

BO14956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11999-PA 216 CG11999-PA 1..216 1..216 1149 100 Plus