Clone Sequence Records
BO14956.3prime Sequence
680 bp (650 high quality bases) assembled on 2006-05-29
> BO14956.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCGAGTGGGCGTACTCGTCGTGCGTTG
AGCTCTTCTCCTTGGGCACGATAAAGAGGCCCTCCGCCGTGGTCCAGCGC
GTTCCGTGCTGCGGCTTGTGGACGCCAACGATTTCCATTTGGCCGGAGAT
GGGTCTGCCATAGGAGCGGCCGGACATGCCCAGGTACATGCCGGTGTCGA
TGTGGCGCAGCCTAACGTGGGCACTGCGCATCCAGTTCTCGTTGGAGCAG
ACCACCTCCCAGTGGTCGCCGGTGTCGCCGAGTCCATCCGTTCCGTACGC
GGACACCTCCTGCTCGCCTGAGAGCGGCGACGAAAAGTGGTGCGAGTGCA
GGTTCTTCTTGGTGGACAGGTGCTCCAGTCGCACGGTGGATCCGCAGGCG
ATGGGCTCGCCCCTTTCACAAAGCTCGCCGGTCTGCGCCTTGATCACCCA
GTGGCTGTTCACGTCCTCCTTCTGCTCCACGCCCGTCACCGACTGCTGCC
CGGAACCAGATCCGTACTTGACGTCGTGGGAGTGCAGGCGGAAGGCGTAG
TCCGAGTTGAGCAGCTTCAGGATGGAGCCGCAGGTGACCACGTTGGATTC
GGTGGCGGCTCCCCTGGAAATGCTGCCTACCAGCGCCAGTCCTGTAAGAA
GTAGTATGTGCTGCATGTCGACTGATAACT
BO14956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11999-PA | 651 | CG11999-RA | 1..648 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11999-RA | 904 | CG11999-RA | 127..774 | 666..19 | 3240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5353847..5354434 | 19..606 | 2940 | 100 | Plus |
3R | 32079331 | 3R | 5354561..5354621 | 606..666 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:17:16 has no hits.
BO14956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:11 Download gff for
BO14956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-PA | 1..651 | 18..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:25 Download gff for
BO14956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-PA | 1..651 | 18..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:03:36 Download gff for
BO14956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 19..666 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:08 Download gff for
BO14956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 19..666 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:08 Download gff for
BO14956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5353847..5354433 | 19..605 | 100 | <- | Plus |
3R | 5354561..5354621 | 606..666 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:03:36 Download gff for
BO14956.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1179569..1180155 | 19..605 | 100 | <- | Plus |
arm_3R | 1180283..1180343 | 606..666 | 100 | | Plus |
BO14956.5prime Sequence
680 bp (620 high quality bases) assembled on 2006-05-29
> BO14956.5prime
GAAGTTATCAGTCGACATGCAGCACATACTACTTCTTACAGGACTGGCGC
TGGTAGGCAGCATTTCCAGGGGAGCCGCCACCGAATCCAACGTGGTCACC
TGCGGCTCCATCCTGAAGCTGCTCAACTCGGACTACGCCTTCCGCCTGCA
CTCCCACGACGTCAAGTACGGATCTGGTTCCGGGCAGCAGTCGGTGACGG
GCGTGGAGCAGAAGGAGGACGTGAACAGCCACTGGGTGATCAAGGCGCAG
ACCGGCGAGCTTTGTGAAAGGGGCGAGCCCATCGCCTGCGGATCCACCGT
GCGACTGGAGCACCTGTCCACCAAGAAGAACCTGCACTCGCACCACTTTT
CGTCGCCGCTCTCAGGCGAGCAGGAGGTGTCCGCGTACGGAACGGATGGA
CTCGGCGACACCGGCGACCACTGGGAGGTGGTCTGCTCCAACGAGAACTG
GATGCGCAGTGCCCACGTTAGGCTGCGCCACATCGACACCGGCATGTACC
TGGGCATGTCCGGCCGCTCCTATGGCAGACCCATCTCCGGCCAAATGGAA
ATCGTTGGCGTCCACAAGCCGCAGCACGGAACGCGCTGGACCACGGCGGA
GGGCCTCTTTATCGTGCCCAAGGAGAAGAGCTCAACGCACGACGAGTACG
CCCACTCGGAGCTGGCAAGCTTTCTAGACC
BO14956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11999-PA | 651 | CG11999-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11999-RA | 904 | CG11999-RA | 127..774 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5353847..5354434 | 664..77 | 2940 | 100 | Minus |
3R | 32079331 | 3R | 5354561..5354621 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:21:08 has no hits.
BO14956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:12 Download gff for
BO14956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-PA | 1..651 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:27 Download gff for
BO14956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-PA | 1..651 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:57 Download gff for
BO14956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:49 Download gff for
BO14956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 17..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:49 Download gff for
BO14956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5353847..5354433 | 78..664 | 100 | <- | Minus |
3R | 5354561..5354621 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:57 Download gff for
BO14956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1179569..1180155 | 78..664 | 100 | <- | Minus |
arm_3R | 1180283..1180343 | 17..77 | 100 | | Minus |
BO14956.complete Sequence
682 bp (682 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633298
> BO14956.complete
GAAGTTATCAGTCGACATGCAGCACATACTACTTCTTACAGGACTGGCGC
TGGTAGGCAGCATTTCCAGGGGAGCCGCCACCGAATCCAACGTGGTCACC
TGCGGCTCCATCCTGAAGCTGCTCAACTCGGACTACGCCTTCCGCCTGCA
CTCCCACGACGTCAAGTACGGATCTGGTTCCGGGCAGCAGTCGGTGACGG
GCGTGGAGCAGAAGGAGGACGTGAACAGCCACTGGGTGATCAAGGCGCAG
ACCGGCGAGCTTTGTGAAAGGGGCGAGCCCATCGCCTGCGGATCCACCGT
GCGACTGGAGCACCTGTCCACCAAGAAGAACCTGCACTCGCACCACTTTT
CGTCGCCGCTCTCAGGCGAGCAGGAGGTGTCCGCGTACGGAACGGATGGA
CTCGGCGACACCGGCGACCACTGGGAGGTGGTCTGCTCCAACGAGAACTG
GATGCGCAGTGCCCACGTTAGGCTGCGCCACATCGACACCGGCATGTACC
TGGGCATGTCCGGCCGCTCCTATGGCAGACCCATCTCCGGCCAAATGGAA
ATCGTTGGCGTCCACAAGCCGCAGCACGGAACGCGCTGGACCACGGCGGA
GGGCCTCTTTATCGTGCCCAAGGAGAAGAGCTCAACGCACGACGAGTACG
CCCACTCGGAGCTGGCAAGCTTTCTAGACCAT
BO14956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11999-RA | 651 | CG11999-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11999-RA | 904 | CG11999-RA | 127..774 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5353847..5354434 | 664..77 | 2940 | 100 | Minus |
3R | 32079331 | 3R | 5354561..5354621 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:55:20 has no hits.
BO14956.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:52 Download gff for
BO14956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 1..651 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:26 Download gff for
BO14956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:24 Download gff for
BO14956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:52 Download gff for
BO14956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 17..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:06 Download gff for
BO14956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11999-RA | 127..774 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:06 Download gff for
BO14956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5354561..5354621 | 17..77 | 100 | | Minus |
3R | 5353845..5354433 | 78..666 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:24 Download gff for
BO14956.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1180283..1180343 | 17..77 | 100 | | Minus |
arm_3R | 1179567..1180155 | 78..666 | 99 | <- | Minus |
BO14956.pep Sequence
Translation from 16 to 682
> BO14956.pep
MQHILLLTGLALVGSISRGAATESNVVTCGSILKLLNSDYAFRLHSHDVK
YGSGSGQQSVTGVEQKEDVNSHWVIKAQTGELCERGEPIACGSTVRLEHL
STKKNLHSHHFSSPLSGEQEVSAYGTDGLGDTGDHWEVVCSNENWMRSAH
VRLRHIDTGMYLGMSGRSYGRPISGQMEIVGVHKPQHGTRWTTAEGLFIV
PKEKSSTHDEYAHSELASFLDH
BO14956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11999-PA | 216 | CG11999-PA | 1..216 | 1..216 | 1149 | 100 | Plus |