Clone Sequence Records
BO14960.3prime Sequence
818 bp (790 high quality bases) assembled on 2006-05-29
> BO14960.3prime
ATGGTCTAGAAAGCTTGCCAAGGTTTCCTTTTGCATCTGAAGATAGCCGA
GCTCGTAGAATTCCATCACCAACTCCCGTATGCGCATATGGTACTCGGAA
GTGAGCATCTGGGTGCACTTGATCTCCTTGCCCGTGAGATTCTGTTCACT
CATCACGTCCAGGTTGGGTAGGTTATTCGGATCGAAGGTAACAGCTGGAA
GGATCCACATGCCGATAGCCAGTCCATAATGCACCTGTCGAACATAATCC
GAACTGAGGCGCTGCAAGGAGAATGCTTCACATAGCTCTTCTAGCCTTTC
GGCAGCGGTTGTATCCTCCAGCTGGTGCCTTAGTTCCTCACTCAAAGCCT
GCGAGTAGGCGGCCAGCAGGGTGTCCGTGTGCACATCCCTGAGTGGCCTT
CTCGTGCTGGTGTAAATGAAGTGGAGAATGTCAAAAATAGGCGACGACTT
GCGCATGGCCTGCAGGTCGAAGAAGATCACCTCCTCTGGCTCAGAGCGGA
ACATAATGTTGTTTACCCAAAGGTCACCATGGCAGATCACACTGTTTGGA
GCCGCCGCAGTGGCATTAATCTCGTGCTTTAGATTTTCAAACAGATTGGT
ACGAAGTTCCTCGAGCAATCGAATGGGCGTGGTCAAGCAGTCGTCTGCAT
TGGCGTCGCCTAGACTTTCCAGAGCCTGCTGCACGGAGGTGTCTAGAATG
GTGGCGTAAAAGTCCGTCGCCTCATCGCAGTAGACAATCTCTTGAAGATG
ATCAGCATGGAAGGCGAAGGAAGAGGATTCCAGCTCTTGAGCGGCCAGCG
AGGCAGCATGGAGTTGTG
BO14960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-PA | 1380 | CG5644-RA | 578..1377 | 818..19 | 4000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 831..1630 | 818..19 | 4000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8977477..8978276 | 19..818 | 4000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:26:30 has no hits.
BO14960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:19 Download gff for
BO14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-PA | 578..1380 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:37 Download gff for
BO14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-PA | 578..1380 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:53 Download gff for
BO14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 831..1633 | 15..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:13 Download gff for
BO14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 831..1633 | 15..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:13 Download gff for
BO14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8977478..8978276 | 20..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:53 Download gff for
BO14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8970578..8971376 | 20..818 | 100 | | Plus |
BO14960.5prime Sequence
909 bp (819 high quality bases) assembled on 2006-05-29
> BO14960.5prime
GAAGTTATCAGTCGACATGGCTTTGGCAGCGGCACCAACAGCAGGACCTT
CGCATGGCGGCTTGGCATTGACCGTGAGTTCGGCCGGTGGCTACGATGGT
ACCAATCAATACGAGGAGAACGCTGAGCACTTGCGTCAGCTGTTCAGCCA
GAGCAAACTGGTGTCCTTTAGCATTGCCCACATCGCGTGCTCCGCGGGCA
GTAGCAGTGGCGACAACTATATGTCCGTGGTGAAGCGTGTAACCATCTCC
CAGGCAGGAAAGGATCAGGATCCGGAGCTGGCTGGCAGTGAAATCGTCAC
GGTCATTGTGAAGCGACAAATTGCGAGCCTTTCGCGCCGGCAACTCTACC
GATGCGAGGAGGCCTTCAGCAACGAGATCAACGCCTATCGGCACTTGGCG
CCCCTATTAGCTGCCCACAGTCGTCATCAGTTGTTTCCGGTATGCCACAT
TGCGGAGAGTCAAGATCGGCGGGATGCGGAAGGTGGAGAACCCATCATCG
TGCTTCAGGACCTCAAAGCCATGGGTTTTCGCATGAAGGATCGTCTGGCG
GGCTTGGAACTGAGCGACTGCCTTCTAGTGATGAAGAAACTTGCACAACT
CCATGCTGCCTCGCTGGCCGCTCAAGAGCTGGAATCCTCTTCCTTCGCCT
TCCATGCTGATCATCTTCAAGAGATTGTCTACTGCGATGAGGCGACGGAC
TTTTACGCCACCATTCTAGACACCTCCGTGCAGCAGGCTCTGGAAAGTCT
AGGCGACGCCAATGCAGACGACTGCTTGACCACGCCCATTCGATTGCTCG
AGGAACTTCGTACCAATCTGTTTNGAAATCTAAAGCACGAGATTAATGCC
ACTGCGGCGGCTCCAAACAGTGTGATCTGCCATGGTGACCTTGGGGTAAA
CAAAATTAT
BO14960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-PA | 1380 | CG5644-RA | 1..893 | 17..909 | 4371 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 254..1146 | 17..909 | 4409 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8977961..8978285 | 909..585 | 1569 | 98.8 | Minus |
| 3L | 28110227 | 3L | 8978350..8978640 | 586..296 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 8979348..8979627 | 296..17 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:03:40 has no hits.
BO14960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:20 Download gff for
BO14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:39 Download gff for
BO14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:44 Download gff for
BO14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1146 | 14..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:55 Download gff for
BO14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1146 | 14..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:55 Download gff for
BO14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8977961..8978283 | 587..909 | 98 | <- | Minus |
| 3L | 8978350..8978639 | 297..586 | 100 | <- | Minus |
| 3L | 8979348..8979629 | 14..296 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:44 Download gff for
BO14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8971061..8971383 | 587..909 | 98 | <- | Minus |
| arm_3L | 8971450..8971739 | 297..586 | 100 | <- | Minus |
| arm_3L | 8972448..8972729 | 14..296 | 99 | | Minus |
BO14960.complete Sequence
1411 bp (1411 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633299
> BO14960.complete
GAAGTTATCAGTCGACATGGCTTTGGCAGCGGCACCAACAGCAGGACCTT
CGCATGGCGGCTTGGCATTGACCGTGAGTTCGGCCGGTGGCTACGATGGT
ACCAATCAATACGAGGAGAACGCTGAGCACTTGCGTCAGCTGTTCAGCCA
GAGCAAACTGGTGTCCTTTAGCATTGCCCACATCGCGTGCTCCGCGGGCA
GTAGCAGTGGCGACAACTATATGTCCGTGGTGAAGCGTGTAACCATCTCC
CAGGCAGGAAAGGATCAGGATCCGGAGCTGGCTGGCAGTGAAATCGTCAC
GGTCATTGTGAAGCGACAAATTGCGAGCCTTTCGCGCCGGCAACTCTACC
GATGCGAGGAGGCCTTCAGCAACGAGATCAACGCCTATCGGCACTTGGCG
CCCCTATTAGCTGCCCACAGTCGTCATCAGTTGTTTCCGGTATGCCACAT
TGCGGAGAGTCAAGATCGGCGGGATGCGGAAGGTGGAGAACCCATCATCG
TGCTTCAGGACCTCAAAGCCATGGGTTTTCGCATGAAGGATCGTCTGGCG
GGCTTGGAACTGAGCGACTGCCTTCTAGTGATGAAGAAACTTGCACAACT
CCATGCTGCCTCGCTGGCCGCTCAAGAGCTGGAATCCTCTTCCTTCGCCT
TCCATGCTGATCATCTTCAAGAGATTGTCTACTGCGATGAGGCGACGGAC
TTTTACGCCACCATTCTAGACACCTCCGTGCAGCAGGCTCTGGAAAGTCT
AGGCGACGCCAATGCAGACGACTGCTTGACCACGCCCATTCGATTGCTCG
AGGAACTTCGTACCAATCTGTTTGAAAATCTAAAGCACGAGATTAATGCC
ACTGCGGCGGCTCCAAACAGTGTGATCTGCCATGGTGACCTTTGGGTAAA
CAACATTATGTTCCGCTCTGAGCCAGAGGAGGTGATCTTCTTCGACCTGC
AGGCCATGCGCAAGTCGTCGCCTATTTTTGACATTCTCCACTTCATTTAC
ACCAGCACGAGAAGGCCACTCAGGGATGTGCACACGGACACCCTGCTGGC
CGCCTACTCGCAGGCTTTGAGTGAGGAACTAAGGCACCAGCTGGAGGATA
CAACCGCTGCCGAAAGGCTAGAAGAGCTATGTGAAGCATTCTCCTTGCAG
CGCCTCAGTTCGGATTATGTTCGACAGGTGCATTATGGACTGGCTATCGG
CATGTGGATCCTTCCAGCTGTTACCTTCGATCCGAATAACCTACCCAACC
TGGACGTGATGAGTGAACAGAATCTCACGGGCAAGGAGATCAAGTGCACC
CAGATGCTCACTTCCGAGTACCATATGCGCATACGGGAGTTGGTGATGGA
ATTCTACGAGCTCGGCTATCTTCAGATGCAAAAGGAAACCTTGGCAAGCT
TTCTAGACCAT
BO14960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1380 | CG5644-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 254..1630 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8977477..8978285 | 1393..585 | 4045 | 100 | Minus |
| 3L | 28110227 | 3L | 8978350..8978640 | 586..296 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 8979348..8979627 | 296..17 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:31 has no hits.
BO14960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:53 Download gff for
BO14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 1..1380 | 17..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:27 Download gff for
BO14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1633 | 14..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:08 Download gff for
BO14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 254..1630 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:54 Download gff for
BO14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1633 | 14..1397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:34 Download gff for
BO14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 254..1630 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:34 Download gff for
BO14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8979348..8979627 | 17..296 | 100 | | Minus |
| 3L | 8977475..8978283 | 587..1395 | 99 | <- | Minus |
| 3L | 8978350..8978639 | 297..586 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:08 Download gff for
BO14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8972448..8972727 | 17..296 | 100 | | Minus |
| arm_3L | 8970575..8971383 | 587..1395 | 99 | <- | Minus |
| arm_3L | 8971450..8971739 | 297..586 | 100 | <- | Minus |
BO14960.pep Sequence
Translation from 16 to 1411
> BO14960.pep
MALAAAPTAGPSHGGLALTVSSAGGYDGTNQYEENAEHLRQLFSQSKLVS
FSIAHIACSAGSSSGDNYMSVVKRVTISQAGKDQDPELAGSEIVTVIVKR
QIASLSRRQLYRCEEAFSNEINAYRHLAPLLAAHSRHQLFPVCHIAESQD
RRDAEGGEPIIVLQDLKAMGFRMKDRLAGLELSDCLLVMKKLAQLHAASL
AAQELESSSFAFHADHLQEIVYCDEATDFYATILDTSVQQALESLGDANA
DDCLTTPIRLLEELRTNLFENLKHEINATAAAPNSVICHGDLWVNNIMFR
SEPEEVIFFDLQAMRKSSPIFDILHFIYTSTRRPLRDVHTDTLLAAYSQA
LSEELRHQLEDTTAAERLEELCEAFSLQRLSSDYVRQVHYGLAIGMWILP
AVTFDPNNLPNLDVMSEQNLTGKEIKCTQMLTSEYHMRIRELVMEFYELG
YLQMQKETLASFLDH
BO14960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-PA | 459 | CG5644-PA | 1..459 | 1..459 | 2339 | 100 | Plus |
| CG2004-PG | 425 | CG2004-PG | 43..425 | 65..453 | 316 | 26.4 | Plus |
| CG2004-PF | 425 | CG2004-PF | 43..425 | 65..453 | 316 | 26.4 | Plus |
| CG2004-PD | 425 | CG2004-PD | 43..425 | 65..453 | 316 | 26.4 | Plus |
| CG2004-PC | 425 | CG2004-PC | 43..425 | 65..453 | 316 | 26.4 | Plus |
