Clone Sequence Records
BO14962.3prime Sequence
503 bp (502 high quality bases) assembled on 2006-05-29
> BO14962.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGTTCTGGGGATCTGATTCGAGTTCCA
GTTCTGTGGCAGTATGGCGAGATTTGAGCTCTTCTTGGGCACGATCGTGC
AATAATTTGATGTCGTCTGCAGTCTTGTTCAGGAAAAAGGCCTCCTCGAG
TACGTTCTTGTGCTTGTTCATGGAAGAGGTGCTGCCCAGCGAGGCGTGGT
CCAGAGTCTTCTGGAACTCGTCCCAGTTGGGCAGGTAGTCGCCGGGCTCC
TTCTTGTCCCGCATCTTGCCCACGAGGGTTTGGGTCAACGAAATGAAGTA
CTCCTCCTCCTTGAGACCGCCCTGCAGCTTGCCAAGTCCGCCGCCCCAAA
GGAAAACACCCGGGGGCTTCTTCTCCTCGGAGTAGAGCTTCCTGGGCGCC
AGGCCGAGTTTTGGATTGAGACCCATGCTCAGTCTACGCTGCACTATTCC
TGCACAAAACATCCTTGCACGTGCGAGTATGGAACACATGTCGACTGATA
ACT
BO14962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-PA | 474 | CG9875-RA | 1..471 | 489..19 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-RB | 730 | CG9875-RB | 96..566 | 489..19 | 2355 | 100 | Minus |
CG9875-RA | 674 | CG9875-RA | 96..566 | 489..19 | 2355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23357893..23358178 | 409..124 | 1430 | 100 | Minus |
2R | 25286936 | 2R | 23358238..23358344 | 125..19 | 535 | 100 | Minus |
2R | 25286936 | 2R | 23357755..23357834 | 489..410 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:18:24 has no hits.
BO14962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:23 Download gff for
BO14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-PA | 1..474 | 18..489 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:43 Download gff for
BO14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-PA | 1..474 | 18..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:41 Download gff for
BO14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 92..571 | 11..494 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:51 Download gff for
BO14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 92..571 | 11..494 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:51 Download gff for
BO14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23357751..23357834 | 410..494 | 97 | -> | Minus |
2R | 23357893..23358178 | 124..409 | 100 | -> | Minus |
2R | 23358240..23358349 | 11..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:41 Download gff for
BO14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19245274..19245357 | 410..494 | 97 | -> | Minus |
arm_2R | 19245416..19245701 | 124..409 | 100 | -> | Minus |
arm_2R | 19245763..19245872 | 11..123 | 96 | | Minus |
BO14962.complete Sequence
505 bp assembled on 2008-08-15
GenBank Submission: FJ633300
> BO14962.complete
GAAGTTATCAGTCGACATGTGTTCCATACTCGCACGTGCAAGGATGTTTT
GTGCAGGAATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCCAAAACTC
GGCCTGGCGCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCCCGGGTGT
TTTCCTTTGGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTCAAGGAGG
AGGAGTACTTCATTTCGTTGACCCAAACCCTCGTGGGCAAGATGCGGGAC
AAGAAGGAGCCCGGCGACTACCTGCCCAACTGGGACGAGTTCCAGAAGAC
TCTGGACCACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAGCACAAGA
ACGTACTCGAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGACATCAAA
TTATTGCACGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCAC
AGAACTGGAACTCGAATCAGATCCCCAGAACACCAAAGCAAGCTTTCTAG
ACCAT
BO14962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-RB | 474 | CG9875-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
CG9875-RA | 474 | CG9875-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-RB | 730 | CG9875-RB | 96..566 | 17..487 | 2355 | 100 | Plus |
CG9875-RA | 674 | CG9875-RA | 96..566 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23357893..23358178 | 97..382 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 23358238..23358344 | 381..487 | 535 | 100 | Plus |
2R | 25286936 | 2R | 23357755..23357834 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:14 has no hits.
BO14962.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:33 Download gff for
BO14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 73..552 | 12..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:04 Download gff for
BO14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 96..566 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:59 Download gff for
BO14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 77..547 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:46 Download gff for
BO14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 96..566 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:46 Download gff for
BO14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23357755..23357834 | 17..96 | 100 | -> | Plus |
2R | 23357893..23358178 | 97..382 | 100 | -> | Plus |
2R | 23358240..23358344 | 383..489 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:04 Download gff for
BO14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19245278..19245357 | 17..96 | 100 | -> | Plus |
arm_2R | 19245416..19245701 | 97..382 | 100 | -> | Plus |
arm_2R | 19245763..19245867 | 383..489 | 98 | | Plus |
BO14962.pep Sequence
Translation from 16 to 505
> BO14962.pep
MCSILARARMFCAGIVQRRLSMGLNPKLGLAPRKLYSEEKKPPGVFLWGG
GLGKLQGGLKEEEYFISLTQTLVGKMRDKKEPGDYLPNWDEFQKTLDHAS
LGSTSSMNKHKNVLEEAFFLNKTADDIKLLHDRAQEELKSRHTATELELE
SDPQNTKASFLDH
BO14962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-PB | 157 | CG9875-PB | 1..157 | 1..157 | 821 | 100 | Plus |
CG9875-PA | 157 | CG9875-PA | 1..157 | 1..157 | 821 | 100 | Plus |