Clone BO14962 Report

Search the DGRC for BO14962

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG9875-RA
Protein status:BO14962.pep: Imported from assembly
Sequenced Size:505

Clone Sequence Records

BO14962.3prime Sequence

503 bp (502 high quality bases) assembled on 2006-05-29

> BO14962.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGTTCTGGGGATCTGATTCGAGTTCCA
GTTCTGTGGCAGTATGGCGAGATTTGAGCTCTTCTTGGGCACGATCGTGC
AATAATTTGATGTCGTCTGCAGTCTTGTTCAGGAAAAAGGCCTCCTCGAG
TACGTTCTTGTGCTTGTTCATGGAAGAGGTGCTGCCCAGCGAGGCGTGGT
CCAGAGTCTTCTGGAACTCGTCCCAGTTGGGCAGGTAGTCGCCGGGCTCC
TTCTTGTCCCGCATCTTGCCCACGAGGGTTTGGGTCAACGAAATGAAGTA
CTCCTCCTCCTTGAGACCGCCCTGCAGCTTGCCAAGTCCGCCGCCCCAAA
GGAAAACACCCGGGGGCTTCTTCTCCTCGGAGTAGAGCTTCCTGGGCGCC
AGGCCGAGTTTTGGATTGAGACCCATGCTCAGTCTACGCTGCACTATTCC
TGCACAAAACATCCTTGCACGTGCGAGTATGGAACACATGTCGACTGATA
ACT

BO14962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-PA 474 CG9875-RA 1..471 489..19 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-RB 730 CG9875-RB 96..566 489..19 2355 100 Minus
CG9875-RA 674 CG9875-RA 96..566 489..19 2355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23357893..23358178 409..124 1430 100 Minus
2R 25286936 2R 23358238..23358344 125..19 535 100 Minus
2R 25286936 2R 23357755..23357834 489..410 400 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:18:24 has no hits.

BO14962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:23 Download gff for BO14962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-PA 1..474 18..489 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:43 Download gff for BO14962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-PA 1..474 18..489 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:41 Download gff for BO14962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 92..571 11..494 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:51 Download gff for BO14962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 92..571 11..494 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:51 Download gff for BO14962.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23357751..23357834 410..494 97 -> Minus
2R 23357893..23358178 124..409 100 -> Minus
2R 23358240..23358349 11..123 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:41 Download gff for BO14962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19245274..19245357 410..494 97 -> Minus
arm_2R 19245416..19245701 124..409 100 -> Minus
arm_2R 19245763..19245872 11..123 96   Minus

BO14962.complete Sequence

505 bp assembled on 2008-08-15

GenBank Submission: FJ633300

> BO14962.complete
GAAGTTATCAGTCGACATGTGTTCCATACTCGCACGTGCAAGGATGTTTT
GTGCAGGAATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCCAAAACTC
GGCCTGGCGCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCCCGGGTGT
TTTCCTTTGGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTCAAGGAGG
AGGAGTACTTCATTTCGTTGACCCAAACCCTCGTGGGCAAGATGCGGGAC
AAGAAGGAGCCCGGCGACTACCTGCCCAACTGGGACGAGTTCCAGAAGAC
TCTGGACCACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAGCACAAGA
ACGTACTCGAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGACATCAAA
TTATTGCACGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCAC
AGAACTGGAACTCGAATCAGATCCCCAGAACACCAAAGCAAGCTTTCTAG
ACCAT

BO14962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-RB 474 CG9875-PB 1..471 17..487 2355 100 Plus
CG9875-RA 474 CG9875-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-RB 730 CG9875-RB 96..566 17..487 2355 100 Plus
CG9875-RA 674 CG9875-RA 96..566 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23357893..23358178 97..382 1430 100 Plus
2R 25286936 2R 23358238..23358344 381..487 535 100 Plus
2R 25286936 2R 23357755..23357834 17..96 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:45:14 has no hits.

BO14962.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:33 Download gff for BO14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 73..552 12..495 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:04 Download gff for BO14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 96..566 17..489 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:59 Download gff for BO14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 77..547 17..489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:46 Download gff for BO14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 96..566 17..489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:46 Download gff for BO14962.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23357755..23357834 17..96 100 -> Plus
2R 23357893..23358178 97..382 100 -> Plus
2R 23358240..23358344 383..489 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:04 Download gff for BO14962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19245278..19245357 17..96 100 -> Plus
arm_2R 19245416..19245701 97..382 100 -> Plus
arm_2R 19245763..19245867 383..489 98   Plus

BO14962.pep Sequence

Translation from 16 to 505

> BO14962.pep
MCSILARARMFCAGIVQRRLSMGLNPKLGLAPRKLYSEEKKPPGVFLWGG
GLGKLQGGLKEEEYFISLTQTLVGKMRDKKEPGDYLPNWDEFQKTLDHAS
LGSTSSMNKHKNVLEEAFFLNKTADDIKLLHDRAQEELKSRHTATELELE
SDPQNTKASFLDH

BO14962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-PB 157 CG9875-PB 1..157 1..157 821 100 Plus
CG9875-PA 157 CG9875-PA 1..157 1..157 821 100 Plus