Clone Sequence Records
BO14963.3prime Sequence
864 bp (776 high quality bases) assembled on 2006-05-29
> BO14963.3prime
ATGGTCTAGAAAGCTTGCCATGGATGTTCCGTTCTGGGAGGAGGCATCGC
TGATGCGACGTGACAGCGTCGTCTTGCGGCTAATGGACTTGGTGTTGCCG
ATCTGATTGGCGCTGGTATGATAGTTGGAGCTCGAACCGCCGCTGGTCGG
GGTGTCAGTGTTCAGTGATTCCACAGTTCGCATCGCCGAACGCTTCAGGG
AGCCAGTCACCTCGTGCGGCTCCTGGTAGCCGGAGTCCATGTCATCATGG
TAGGAGTCCATCAATGGCGTGGGATCCTCATAGTCGTAGTCAACGAAGCC
ATTGTTGTCAAAGGACTTGACAAACGACTGCGAATGCTTCTCGTAGCCAC
GGAACACCTGGCTGTGCGACTTGCCGCGATAGTCCACCGATTCGTAGTGC
CCATCCTGGGAGTTCTCGATGATGAAGTGCCTGGTGCCGTGGGGCGTTAG
TGTGGCCCACAGTAGACGGCTATCGTTGACCAGCTGGCTCTGGAGCAGAT
CCCTACTGTTGGCCGTGGCGCAGGGATAAAGAATTCCGCCGGATGTGAAG
GCATTGGATTTGGTCGCCTCGCCGAGGGCATTAATGGCCGTCTGCTTGAT
ATTGGCGTCGTGGTACGAGAAAAAGGAGCTGTCTCTGCACCGCATCACGA
TGAGGGCCAGGAAGCAGCCGAACACAAAGATCCCGATGCAGGACGAGACA
AACAGCCAGACGCTCTCCAGACTCTTGGAATCACTTCTCACCAGCTCCAT
TAGCGCGTTTCCGCTCTCGTTGTGCTGCATCCCATGGCCGCACATGAAGG
CGGGAAAGCACGGCTGCGACTCTTTGGAGGGCACCAGGATGTCCACCGTC
GCCGGCTTTGAGAT
BO14963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-PA | 957 | CG9919-RA | 109..954 | 864..19 | 4180 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 1647 | CG9919-RA | 165..1010 | 864..19 | 4200 | 99.8 | Minus |
CG9919-RB | 1644 | CG9919-RB | 165..1007 | 864..19 | 4145 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16329515..16329830 | 316..631 | 1580 | 100 | Plus |
X | 23542271 | X | 16329074..16329372 | 19..317 | 1495 | 100 | Plus |
X | 23542271 | X | 16329895..16330127 | 632..864 | 1135 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:24:20 has no hits.
BO14963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:24 Download gff for
BO14963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-PA | 109..957 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:45 Download gff for
BO14963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-PA | 109..957 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:18 Download gff for
BO14963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 165..1013 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:27 Download gff for
BO14963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 165..1013 | 15..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:27 Download gff for
BO14963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16329070..16329370 | 15..315 | 99 | <- | Plus |
X | 16329515..16329830 | 316..631 | 100 | <- | Plus |
X | 16329895..16330127 | 632..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:18 Download gff for
BO14963.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16223103..16223403 | 15..315 | 99 | <- | Plus |
arm_X | 16223548..16223863 | 316..631 | 100 | <- | Plus |
arm_X | 16223928..16224160 | 632..864 | 99 | | Plus |
BO14963.5prime Sequence
849 bp (776 high quality bases) assembled on 2006-05-29
> BO14963.5prime
GAAGTTATCAGTCGACATGATGAACATGCTCTTTGGCAATTGTGTGGGCA
GCTGTGACCAGCTGGCCGGTCCACCGCCGGACTTTATATTATCGATGCCG
CCGCCGCCGCTGCCGTCCTTTCTAATCTCAAAGCCGGCGACGGTGGACAT
CCTGGTGCCCTCCAATGAGTCGCAGCCGTGCTTTGCCGCCTTCATGTGCG
GCCATGGGATGCAGCACAACGAGAGCGGAAACGCGCTAATGGAGCTGGTG
AGAAGTGATTCCAAGAGTCTGGAGAGCGTCTGGCTGTTTGTCTCGTCCTG
CATCGGGATCTTTGTGTTCGGCTGCTTCCTGGCCCTCATCGTGATGCGGT
GCAGAGACAGCTCCTTTTTCTCGTACCACGACGCCAATATCAAGCAGACG
GCCATTAATGCCCTCGGCGAGGCGACCAAATCCAATGCCTTCACATCCGG
CGGAATTCTTTATCCCTGCGCCACGGCCAACAGTAGGGATCTGCTCCAGA
GCCAGCTGGTCAACGATAGCCGTCTACTGTGGGCCACACTAACGCCCCAC
GGCACCAGGCACTTCATCATCGAGAACTCCCAGGATGGGCACTACGAATC
GGTGGACTATCGCGGCAAGTCGCACAGCCAGGTGTTCCGTGGCTACGAGA
AGCATTCGCAGTCGTTTGTCAAGTCCTTTGACAACAATGGCTTCGTTGAC
TACGACTATGAGGATCCCACGCCATTGATGGACTCCTACCATGATGACAT
GGACTCCGGCTACCAGGAGCCGCACGAGGTGACTGGCTCCCTGAAGCGTT
CGGCGATGCGAACTGTGGAATCACTGAACACTGACACCCCGACCAGCGG
BO14963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-PA | 957 | CG9919-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 1647 | CG9919-RA | 56..889 | 16..849 | 4170 | 100 | Plus |
CG9919-RB | 1644 | CG9919-RB | 56..886 | 16..849 | 4115 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16329895..16330236 | 357..16 | 1710 | 100 | Minus |
X | 23542271 | X | 16329515..16329830 | 673..358 | 1580 | 100 | Minus |
X | 23542271 | X | 16329195..16329372 | 849..672 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:02:45 has no hits.
BO14963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:25 Download gff for
BO14963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:46 Download gff for
BO14963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:11 Download gff for
BO14963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 51..889 | 10..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:17:02 Download gff for
BO14963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 51..889 | 10..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:17:02 Download gff for
BO14963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16329195..16329370 | 674..849 | 100 | <- | Minus |
X | 16329515..16329830 | 358..673 | 100 | <- | Minus |
X | 16329895..16330241 | 10..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:11 Download gff for
BO14963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16223548..16223863 | 358..673 | 100 | <- | Minus |
arm_X | 16223228..16223403 | 674..849 | 100 | <- | Minus |
arm_X | 16223928..16224274 | 10..357 | 99 | | Minus |
BO14963.complete Sequence
988 bp (988 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633301
> BO14963.complete
GAAGTTATCAGTCGACATGATGAACATGCTCTTTGGCAATTGTGTGGGCA
GCTGTGACCAGCTGGCCGGTCCACCGCCGGACTTTATATTATCGATGCCG
CCGCCGCCGCTGCCGTCCTTTCTAATCTCAAAGCCGGCGACGGTGGACAT
CCTGGTGCCCTCCAATGAGTCGCAGCCGTGCTTTGCCGCCTTCATGTGCG
GCCATGGGATGCAGCACAACGAGAGCGGAAACGCGCTAATGGAGCTGGTG
AGAAGTGATTCCAAGAGTCTGGAGAGCGTCTGGCTGTTTGTCTCGTCCTG
CATCGGGATCTTTGTGTTCGGCTGCTTCCTGGCCCTCATCGTGATGCGGT
GCAGAGACAGCTCCTTTTTCTCGTACCACGACGCCAATATCAAGCAGACG
GCCATTAATGCCCTCGGCGAGGCGACCAAATCCAATGCCTTCACATCCGG
CGGAATTCTTTATCCCTGCGCCACGGCCAACAGTAGGGATCTGCTCCAGA
GCCAGCTGGTCAACGATAGCCGTCTACTGTGGGCCACACTAACGCCCCAC
GGCACCAGGCACTTCATCATCGAGAACTCCCAGGATGGGCACTACGAATC
GGTGGACTATCGCGGCAAGTCGCACAGCCAGGTGTTCCGTGGCTACGAGA
AGCATTCGCAGTCGTTTGTCAAGTCCTTTGACAACAATGGCTTCGTTGAC
TACGACTATGAGGATCCCACGCCATTGATGGACTCCTACCATGATGACAT
GGACTCCGGCTACCAGGAGCCGCACGAGGTGACTGGCTCCCTGAAGCGTT
CGGCGATGCGAACTGTGGAATCACTGAACACTGACACCCCGACCAGCGGC
GGTTCGAGCTCCAACTATCATACCAGCGCCAATCAGATCGGCAACACCAA
GTCCATTAGCCGCAAGACGACGCTGTCACGTCGCATCAGCGATGCCTCCT
CCCAGAACGGAACATCCATGGCAAGCTTTCTAGACCAT
BO14963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 957 | CG9919-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
CG9919-RB | 954 | CG9919-PB | 1..951 | 17..970 | 4690 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 1647 | CG9919-RA | 56..1010 | 16..970 | 4775 | 100 | Plus |
CG9919-RB | 1644 | CG9919-RB | 56..1007 | 16..970 | 4695 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16329895..16330236 | 357..16 | 1710 | 100 | Minus |
X | 23542271 | X | 16329515..16329830 | 673..358 | 1580 | 100 | Minus |
X | 23542271 | X | 16329074..16329372 | 970..672 | 1495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:46:27 has no hits.
BO14963.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:55 Download gff for
BO14963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 1..957 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:29 Download gff for
BO14963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 32..994 | 10..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:30 Download gff for
BO14963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 57..1010 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:55 Download gff for
BO14963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 32..994 | 10..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:39 Download gff for
BO14963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 57..1010 | 17..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:39 Download gff for
BO14963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16329072..16329370 | 674..972 | 99 | <- | Minus |
X | 16329515..16329830 | 358..673 | 100 | <- | Minus |
X | 16329895..16330235 | 17..357 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:30 Download gff for
BO14963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16223105..16223403 | 674..972 | 99 | <- | Minus |
arm_X | 16223548..16223863 | 358..673 | 100 | <- | Minus |
arm_X | 16223928..16224268 | 17..357 | 100 | | Minus |
BO14963.pep Sequence
Translation from 16 to 988
> BO14963.pep
MMNMLFGNCVGSCDQLAGPPPDFILSMPPPPLPSFLISKPATVDILVPSN
ESQPCFAAFMCGHGMQHNESGNALMELVRSDSKSLESVWLFVSSCIGIFV
FGCFLALIVMRCRDSSFFSYHDANIKQTAINALGEATKSNAFTSGGILYP
CATANSRDLLQSQLVNDSRLLWATLTPHGTRHFIIENSQDGHYESVDYRG
KSHSQVFRGYEKHSQSFVKSFDNNGFVDYDYEDPTPLMDSYHDDMDSGYQ
EPHEVTGSLKRSAMRTVESLNTDTPTSGGSSSNYHTSANQIGNTKSISRK
TTLSRRISDASSQNGTSMASFLDH
BO14963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-PA | 318 | CG9919-PA | 1..318 | 1..318 | 1683 | 100 | Plus |
CG9919-PB | 317 | CG9919-PB | 1..317 | 1..318 | 1667 | 99.7 | Plus |