Clone BO14963 Report

Search the DGRC for BO14963

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG9919-RA
Protein status:BO14963.pep: validated full length
Sequenced Size:988

Clone Sequence Records

BO14963.3prime Sequence

864 bp (776 high quality bases) assembled on 2006-05-29

> BO14963.3prime
ATGGTCTAGAAAGCTTGCCATGGATGTTCCGTTCTGGGAGGAGGCATCGC
TGATGCGACGTGACAGCGTCGTCTTGCGGCTAATGGACTTGGTGTTGCCG
ATCTGATTGGCGCTGGTATGATAGTTGGAGCTCGAACCGCCGCTGGTCGG
GGTGTCAGTGTTCAGTGATTCCACAGTTCGCATCGCCGAACGCTTCAGGG
AGCCAGTCACCTCGTGCGGCTCCTGGTAGCCGGAGTCCATGTCATCATGG
TAGGAGTCCATCAATGGCGTGGGATCCTCATAGTCGTAGTCAACGAAGCC
ATTGTTGTCAAAGGACTTGACAAACGACTGCGAATGCTTCTCGTAGCCAC
GGAACACCTGGCTGTGCGACTTGCCGCGATAGTCCACCGATTCGTAGTGC
CCATCCTGGGAGTTCTCGATGATGAAGTGCCTGGTGCCGTGGGGCGTTAG
TGTGGCCCACAGTAGACGGCTATCGTTGACCAGCTGGCTCTGGAGCAGAT
CCCTACTGTTGGCCGTGGCGCAGGGATAAAGAATTCCGCCGGATGTGAAG
GCATTGGATTTGGTCGCCTCGCCGAGGGCATTAATGGCCGTCTGCTTGAT
ATTGGCGTCGTGGTACGAGAAAAAGGAGCTGTCTCTGCACCGCATCACGA
TGAGGGCCAGGAAGCAGCCGAACACAAAGATCCCGATGCAGGACGAGACA
AACAGCCAGACGCTCTCCAGACTCTTGGAATCACTTCTCACCAGCTCCAT
TAGCGCGTTTCCGCTCTCGTTGTGCTGCATCCCATGGCCGCACATGAAGG
CGGGAAAGCACGGCTGCGACTCTTTGGAGGGCACCAGGATGTCCACCGTC
GCCGGCTTTGAGAT

BO14963.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-PA 957 CG9919-RA 109..954 864..19 4180 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-RA 1647 CG9919-RA 165..1010 864..19 4200 99.8 Minus
CG9919-RB 1644 CG9919-RB 165..1007 864..19 4145 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16329515..16329830 316..631 1580 100 Plus
X 23542271 X 16329074..16329372 19..317 1495 100 Plus
X 23542271 X 16329895..16330127 632..864 1135 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 18:24:20 has no hits.

BO14963.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:24 Download gff for BO14963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-PA 109..957 15..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:45 Download gff for BO14963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-PA 109..957 15..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:18 Download gff for BO14963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 165..1013 15..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:27 Download gff for BO14963.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 165..1013 15..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:27 Download gff for BO14963.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16329070..16329370 15..315 99 <- Plus
X 16329515..16329830 316..631 100 <- Plus
X 16329895..16330127 632..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:18 Download gff for BO14963.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16223103..16223403 15..315 99 <- Plus
arm_X 16223548..16223863 316..631 100 <- Plus
arm_X 16223928..16224160 632..864 99   Plus

BO14963.5prime Sequence

849 bp (776 high quality bases) assembled on 2006-05-29

> BO14963.5prime
GAAGTTATCAGTCGACATGATGAACATGCTCTTTGGCAATTGTGTGGGCA
GCTGTGACCAGCTGGCCGGTCCACCGCCGGACTTTATATTATCGATGCCG
CCGCCGCCGCTGCCGTCCTTTCTAATCTCAAAGCCGGCGACGGTGGACAT
CCTGGTGCCCTCCAATGAGTCGCAGCCGTGCTTTGCCGCCTTCATGTGCG
GCCATGGGATGCAGCACAACGAGAGCGGAAACGCGCTAATGGAGCTGGTG
AGAAGTGATTCCAAGAGTCTGGAGAGCGTCTGGCTGTTTGTCTCGTCCTG
CATCGGGATCTTTGTGTTCGGCTGCTTCCTGGCCCTCATCGTGATGCGGT
GCAGAGACAGCTCCTTTTTCTCGTACCACGACGCCAATATCAAGCAGACG
GCCATTAATGCCCTCGGCGAGGCGACCAAATCCAATGCCTTCACATCCGG
CGGAATTCTTTATCCCTGCGCCACGGCCAACAGTAGGGATCTGCTCCAGA
GCCAGCTGGTCAACGATAGCCGTCTACTGTGGGCCACACTAACGCCCCAC
GGCACCAGGCACTTCATCATCGAGAACTCCCAGGATGGGCACTACGAATC
GGTGGACTATCGCGGCAAGTCGCACAGCCAGGTGTTCCGTGGCTACGAGA
AGCATTCGCAGTCGTTTGTCAAGTCCTTTGACAACAATGGCTTCGTTGAC
TACGACTATGAGGATCCCACGCCATTGATGGACTCCTACCATGATGACAT
GGACTCCGGCTACCAGGAGCCGCACGAGGTGACTGGCTCCCTGAAGCGTT
CGGCGATGCGAACTGTGGAATCACTGAACACTGACACCCCGACCAGCGG

BO14963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-PA 957 CG9919-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-RA 1647 CG9919-RA 56..889 16..849 4170 100 Plus
CG9919-RB 1644 CG9919-RB 56..886 16..849 4115 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16329895..16330236 357..16 1710 100 Minus
X 23542271 X 16329515..16329830 673..358 1580 100 Minus
X 23542271 X 16329195..16329372 849..672 890 100 Minus
Blast to na_te.dros performed on 2015-02-02 08:02:45 has no hits.

BO14963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:25 Download gff for BO14963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:46 Download gff for BO14963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:11 Download gff for BO14963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 51..889 10..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:17:02 Download gff for BO14963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 51..889 10..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:17:02 Download gff for BO14963.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16329195..16329370 674..849 100 <- Minus
X 16329515..16329830 358..673 100 <- Minus
X 16329895..16330241 10..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:11 Download gff for BO14963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16223548..16223863 358..673 100 <- Minus
arm_X 16223228..16223403 674..849 100 <- Minus
arm_X 16223928..16224274 10..357 99   Minus

BO14963.complete Sequence

988 bp (988 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633301

> BO14963.complete
GAAGTTATCAGTCGACATGATGAACATGCTCTTTGGCAATTGTGTGGGCA
GCTGTGACCAGCTGGCCGGTCCACCGCCGGACTTTATATTATCGATGCCG
CCGCCGCCGCTGCCGTCCTTTCTAATCTCAAAGCCGGCGACGGTGGACAT
CCTGGTGCCCTCCAATGAGTCGCAGCCGTGCTTTGCCGCCTTCATGTGCG
GCCATGGGATGCAGCACAACGAGAGCGGAAACGCGCTAATGGAGCTGGTG
AGAAGTGATTCCAAGAGTCTGGAGAGCGTCTGGCTGTTTGTCTCGTCCTG
CATCGGGATCTTTGTGTTCGGCTGCTTCCTGGCCCTCATCGTGATGCGGT
GCAGAGACAGCTCCTTTTTCTCGTACCACGACGCCAATATCAAGCAGACG
GCCATTAATGCCCTCGGCGAGGCGACCAAATCCAATGCCTTCACATCCGG
CGGAATTCTTTATCCCTGCGCCACGGCCAACAGTAGGGATCTGCTCCAGA
GCCAGCTGGTCAACGATAGCCGTCTACTGTGGGCCACACTAACGCCCCAC
GGCACCAGGCACTTCATCATCGAGAACTCCCAGGATGGGCACTACGAATC
GGTGGACTATCGCGGCAAGTCGCACAGCCAGGTGTTCCGTGGCTACGAGA
AGCATTCGCAGTCGTTTGTCAAGTCCTTTGACAACAATGGCTTCGTTGAC
TACGACTATGAGGATCCCACGCCATTGATGGACTCCTACCATGATGACAT
GGACTCCGGCTACCAGGAGCCGCACGAGGTGACTGGCTCCCTGAAGCGTT
CGGCGATGCGAACTGTGGAATCACTGAACACTGACACCCCGACCAGCGGC
GGTTCGAGCTCCAACTATCATACCAGCGCCAATCAGATCGGCAACACCAA
GTCCATTAGCCGCAAGACGACGCTGTCACGTCGCATCAGCGATGCCTCCT
CCCAGAACGGAACATCCATGGCAAGCTTTCTAGACCAT

BO14963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-RA 957 CG9919-PA 1..954 17..970 4770 100 Plus
CG9919-RB 954 CG9919-PB 1..951 17..970 4690 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-RA 1647 CG9919-RA 56..1010 16..970 4775 100 Plus
CG9919-RB 1644 CG9919-RB 56..1007 16..970 4695 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16329895..16330236 357..16 1710 100 Minus
X 23542271 X 16329515..16329830 673..358 1580 100 Minus
X 23542271 X 16329074..16329372 970..672 1495 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:46:27 has no hits.

BO14963.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:55 Download gff for BO14963.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 1..957 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:29 Download gff for BO14963.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 32..994 10..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:30 Download gff for BO14963.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 57..1010 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:55 Download gff for BO14963.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 32..994 10..974 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:39 Download gff for BO14963.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 57..1010 17..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:39 Download gff for BO14963.complete
Subject Subject Range Query Range Percent Splice Strand
X 16329072..16329370 674..972 99 <- Minus
X 16329515..16329830 358..673 100 <- Minus
X 16329895..16330235 17..357 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:30 Download gff for BO14963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16223105..16223403 674..972 99 <- Minus
arm_X 16223548..16223863 358..673 100 <- Minus
arm_X 16223928..16224268 17..357 100   Minus

BO14963.pep Sequence

Translation from 16 to 988

> BO14963.pep
MMNMLFGNCVGSCDQLAGPPPDFILSMPPPPLPSFLISKPATVDILVPSN
ESQPCFAAFMCGHGMQHNESGNALMELVRSDSKSLESVWLFVSSCIGIFV
FGCFLALIVMRCRDSSFFSYHDANIKQTAINALGEATKSNAFTSGGILYP
CATANSRDLLQSQLVNDSRLLWATLTPHGTRHFIIENSQDGHYESVDYRG
KSHSQVFRGYEKHSQSFVKSFDNNGFVDYDYEDPTPLMDSYHDDMDSGYQ
EPHEVTGSLKRSAMRTVESLNTDTPTSGGSSSNYHTSANQIGNTKSISRK
TTLSRRISDASSQNGTSMASFLDH

BO14963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-PA 318 CG9919-PA 1..318 1..318 1683 100 Plus
CG9919-PB 317 CG9919-PB 1..317 1..318 1667 99.7 Plus