Clone Sequence Records
BO14965.3prime Sequence
725 bp (724 high quality bases) assembled on 2006-05-29
> BO14965.3prime
ATGGTCTAGAAAGCTTGCTTGTGCGTGCTTTCGACGGCGGGCATCTTCGA
GTTTCTTGAGATACCTAGCAGCCATGCTTAGAATCGAGGGTTCCTCCACA
TCAGAGAAGTTATAGTAATCGTCCTCATCCAGCTTATTGCAATCCGTGCT
AAGTGGTGGTGAAGGTGTTTGCATCGGTGTGTTGTTGTGGTTGCTGTCGC
CGTACGAGGGAGTACTTTTCACCTGGCTCTCGCGATGTATGGGCATTACA
GTGATTTTCTGCGCCTTGGTCCTAGACCTTTTAGTCAACTGATCGTCGGA
GGCGAAGGTCACATGCTCTTTGGTGGGATTTTGCCTCTTGCTTCGGCCAC
GTTTGAGATTGGAAACTTTTAGGGAACTAATTGATGTGGCTGGAGCAGCA
TACCTTGCTCCCTTGATTTCCCTATTATCCAAATCCCTTTTCCTTCCAAC
TGAGCTACTGCGCCCCGTCAACGATCCCTTGGTCAAGTGATGGTCCAGAA
TTTTGCTCACCCGCTCCTCAACCATTCGATTAACTGTATCATTCAGCTGC
TCCATCTTCTCGTCCACAACCTCGTTGACCGCCATCCTAATGGCCTCATA
TATTTCATTCATGTACTTCGATCGTGCATTTTCCGACTGTGAGCGAGGCC
TCAGCTTGTCCAGCACATCCTCGGTGATCAGTGCGAATCGCAGCTTTGTT
GCCTTCGACATGTCGACTGATAACT
BO14965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1958-PA | 696 | CG1958-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1958-RA | 980 | CG1958-RA | 136..830 | 713..19 | 3475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7267039..7267733 | 713..19 | 3475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:41:19 has no hits.
BO14965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:28 Download gff for
BO14965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:51 Download gff for
BO14965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:35 Download gff for
BO14965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 128..836 | 11..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:12 Download gff for
BO14965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 128..836 | 11..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:12 Download gff for
BO14965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7267031..7267739 | 11..720 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:35 Download gff for
BO14965.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7161064..7161772 | 11..720 | 99 | | Minus |
BO14965.5prime Sequence
725 bp (724 high quality bases) assembled on 2006-05-29
> BO14965.5prime
GAAGTTATCAGTCGACATGTCGAAGGCAACAAAGCTGCGATTCGCACTGA
TCACCGAGGATGTGCTGGACAAGCTGAGGCCTCGCTCACAGTCGGAAAAT
GCACGATCGAAGTACATGAATGAAATATATGAGGCCATTAGGATGGCGGT
CAACGAGGTTGTGGACGAGAAGATGGAGCAGCTGAATGATACAGTTAATC
GAATGGTTGAGGAGCGGGTGAGCAAAATTCTGGACCATCACTTGACCAAG
GGATCGTTGACGGGGCGCAGTAGCTCAGTTGGAAGGAAAAGGGATTTGGA
TAATAGGGAAATCAAGGGAGCAAGGTATGCTGCTCCAGCCACATCAATTA
GTTCCCTAAAAGTTTCCAATCTCAAACGTGGCCGAAGCAAGAGGCAAAAT
CCCACCAAAGAGCATGTGACCTTCGCCTCCGACGATCAGTTGACTAAAAG
GTCTAGGACCAAGGCGCAGAAAATCACTGTAATGCCCATACATCGCGAGA
GCCAGGTGAAAAGTACTCCCTCGTACGGCGACAGCAACCACAACAACACA
CCGATGCAAACACCTTCACCACCACTTAGCACGGATTGCAATAAGCTGGA
TGAGGACGATTACTATAACTTCTCTGATGTGGAGGAACCCTCGATTCTAA
GCATGGCTGCTAGGTATCTCAAGAAACTCGAAGATGCCCGCCGTCGAAAG
CACGCACAAGCAAGCTTTCTAGACC
BO14965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1958-PA | 696 | CG1958-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1958-RA | 980 | CG1958-RA | 136..830 | 15..709 | 3475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7267039..7267733 | 15..709 | 3475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:07:04 has no hits.
BO14965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:29 Download gff for
BO14965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:52 Download gff for
BO14965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:59:02 Download gff for
BO14965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 128..836 | 8..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:25 Download gff for
BO14965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 128..836 | 8..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:25 Download gff for
BO14965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7267031..7267739 | 8..717 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:59:02 Download gff for
BO14965.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7161064..7161772 | 8..717 | 99 | | Plus |
BO14965.complete Sequence
727 bp assembled on 2007-10-17
GenBank Submission: FJ633303
> BO14965.complete
GAAGTTATCAGTCGACATGTCGAAGGCAACAAAGCTGCGATTCGCACTGA
TCACCGAGGATGTGCTGGACAAGCTGAGGCCTCGCTCACAGTCGGAAAAT
GCACGATCGAAGTACATGAATGAAATATATGAGGCCATTAGGATGGCGGT
CAACGAGGTTGTGGACGAGAAGATGGAGCAGCTGAATGATACAGTTAATC
GAATGGTTGAGGAGCGGGTGAGCAAAATTCTGGACCATCACTTGACCAAG
GGATCGTTGACGGGGCGCAGTAGCTCAGTTGGAAGGAAAAGGGATTTGGA
TAATAGGGAAATCAAGGGAGCAAGGTATGCTGCTCCAGCCACATCAATTA
GTTCCCTAAAAGTTTCCAATCTCAAACGTGGCCGAAGCAAGAGGCAAAAT
CCCACCAAAGAGCATGTGACCTTCGCCTCCGACGATCAGTTGACTAAAAG
GTCTAGGACCAAGGCGCAGAAAATCACTGTAATGCCCATACATCGCGAGA
GCCAGGTGAAAAGTACTCCCTCGTACGGCGACAGCAACCACAACAACACA
CCGATGCAAACACCTTCACCACCACTTAGCACGGATTGCAATAAGCTGGA
TGAGGACGATTACTATAACTTCTCTGATGTGGAGGAACCCTCGATTCTAA
GCATGGCTGCTAGGTATCTCAAGAAACTCGAAGATGCCCGCCGTCGAAAG
CACGCACAAGCAAGCTTTCTAGACCAT
BO14965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1958-RA | 696 | CG1958-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1958-RA | 980 | CG1958-RA | 136..830 | 15..709 | 3475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7267039..7267733 | 15..709 | 3475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:46:13 has no hits.
BO14965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:34 Download gff for
BO14965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:54 Download gff for
BO14965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 128..836 | 8..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:47 Download gff for
BO14965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 138..830 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:28 Download gff for
BO14965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 138..830 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:24 Download gff for
BO14965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1958-RA | 138..830 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:24 Download gff for
BO14965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7267041..7267733 | 17..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:47 Download gff for
BO14965.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7161074..7161766 | 17..711 | 99 | | Plus |
BO14965.pep Sequence
Translation from 16 to 727
> BO14965.pep
MSKATKLRFALITEDVLDKLRPRSQSENARSKYMNEIYEAIRMAVNEVVD
EKMEQLNDTVNRMVEERVSKILDHHLTKGSLTGRSSSVGRKRDLDNREIK
GARYAAPATSISSLKVSNLKRGRSKRQNPTKEHVTFASDDQLTKRSRTKA
QKITVMPIHRESQVKSTPSYGDSNHNNTPMQTPSPPLSTDCNKLDEDDYY
NFSDVEEPSILSMAARYLKKLEDARRRKHAQASFLDH
BO14965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1958-PA | 231 | CG1958-PA | 1..231 | 1..231 | 1170 | 100 | Plus |