Clone BO14965 Report

Search the DGRC for BO14965

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG1958-RA
Protein status:BO14965.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO14965.3prime Sequence

725 bp (724 high quality bases) assembled on 2006-05-29

> BO14965.3prime
ATGGTCTAGAAAGCTTGCTTGTGCGTGCTTTCGACGGCGGGCATCTTCGA
GTTTCTTGAGATACCTAGCAGCCATGCTTAGAATCGAGGGTTCCTCCACA
TCAGAGAAGTTATAGTAATCGTCCTCATCCAGCTTATTGCAATCCGTGCT
AAGTGGTGGTGAAGGTGTTTGCATCGGTGTGTTGTTGTGGTTGCTGTCGC
CGTACGAGGGAGTACTTTTCACCTGGCTCTCGCGATGTATGGGCATTACA
GTGATTTTCTGCGCCTTGGTCCTAGACCTTTTAGTCAACTGATCGTCGGA
GGCGAAGGTCACATGCTCTTTGGTGGGATTTTGCCTCTTGCTTCGGCCAC
GTTTGAGATTGGAAACTTTTAGGGAACTAATTGATGTGGCTGGAGCAGCA
TACCTTGCTCCCTTGATTTCCCTATTATCCAAATCCCTTTTCCTTCCAAC
TGAGCTACTGCGCCCCGTCAACGATCCCTTGGTCAAGTGATGGTCCAGAA
TTTTGCTCACCCGCTCCTCAACCATTCGATTAACTGTATCATTCAGCTGC
TCCATCTTCTCGTCCACAACCTCGTTGACCGCCATCCTAATGGCCTCATA
TATTTCATTCATGTACTTCGATCGTGCATTTTCCGACTGTGAGCGAGGCC
TCAGCTTGTCCAGCACATCCTCGGTGATCAGTGCGAATCGCAGCTTTGTT
GCCTTCGACATGTCGACTGATAACT

BO14965.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1958-PA 696 CG1958-RA 1..693 711..19 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1958-RA 980 CG1958-RA 136..830 713..19 3475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7267039..7267733 713..19 3475 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:41:19 has no hits.

BO14965.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:28 Download gff for BO14965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-PA 1..696 18..711 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:51 Download gff for BO14965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-PA 1..696 18..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:35 Download gff for BO14965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 128..836 11..720 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:12 Download gff for BO14965.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 128..836 11..720 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:12 Download gff for BO14965.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7267031..7267739 11..720 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:35 Download gff for BO14965.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7161064..7161772 11..720 99   Minus

BO14965.5prime Sequence

725 bp (724 high quality bases) assembled on 2006-05-29

> BO14965.5prime
GAAGTTATCAGTCGACATGTCGAAGGCAACAAAGCTGCGATTCGCACTGA
TCACCGAGGATGTGCTGGACAAGCTGAGGCCTCGCTCACAGTCGGAAAAT
GCACGATCGAAGTACATGAATGAAATATATGAGGCCATTAGGATGGCGGT
CAACGAGGTTGTGGACGAGAAGATGGAGCAGCTGAATGATACAGTTAATC
GAATGGTTGAGGAGCGGGTGAGCAAAATTCTGGACCATCACTTGACCAAG
GGATCGTTGACGGGGCGCAGTAGCTCAGTTGGAAGGAAAAGGGATTTGGA
TAATAGGGAAATCAAGGGAGCAAGGTATGCTGCTCCAGCCACATCAATTA
GTTCCCTAAAAGTTTCCAATCTCAAACGTGGCCGAAGCAAGAGGCAAAAT
CCCACCAAAGAGCATGTGACCTTCGCCTCCGACGATCAGTTGACTAAAAG
GTCTAGGACCAAGGCGCAGAAAATCACTGTAATGCCCATACATCGCGAGA
GCCAGGTGAAAAGTACTCCCTCGTACGGCGACAGCAACCACAACAACACA
CCGATGCAAACACCTTCACCACCACTTAGCACGGATTGCAATAAGCTGGA
TGAGGACGATTACTATAACTTCTCTGATGTGGAGGAACCCTCGATTCTAA
GCATGGCTGCTAGGTATCTCAAGAAACTCGAAGATGCCCGCCGTCGAAAG
CACGCACAAGCAAGCTTTCTAGACC

BO14965.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1958-PA 696 CG1958-RA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1958-RA 980 CG1958-RA 136..830 15..709 3475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7267039..7267733 15..709 3475 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:07:04 has no hits.

BO14965.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:29 Download gff for BO14965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-PA 1..696 17..710 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:52 Download gff for BO14965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-PA 1..696 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:59:02 Download gff for BO14965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 128..836 8..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:25 Download gff for BO14965.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 128..836 8..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:25 Download gff for BO14965.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7267031..7267739 8..717 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:59:02 Download gff for BO14965.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7161064..7161772 8..717 99   Plus

BO14965.complete Sequence

727 bp assembled on 2007-10-17

GenBank Submission: FJ633303

> BO14965.complete
GAAGTTATCAGTCGACATGTCGAAGGCAACAAAGCTGCGATTCGCACTGA
TCACCGAGGATGTGCTGGACAAGCTGAGGCCTCGCTCACAGTCGGAAAAT
GCACGATCGAAGTACATGAATGAAATATATGAGGCCATTAGGATGGCGGT
CAACGAGGTTGTGGACGAGAAGATGGAGCAGCTGAATGATACAGTTAATC
GAATGGTTGAGGAGCGGGTGAGCAAAATTCTGGACCATCACTTGACCAAG
GGATCGTTGACGGGGCGCAGTAGCTCAGTTGGAAGGAAAAGGGATTTGGA
TAATAGGGAAATCAAGGGAGCAAGGTATGCTGCTCCAGCCACATCAATTA
GTTCCCTAAAAGTTTCCAATCTCAAACGTGGCCGAAGCAAGAGGCAAAAT
CCCACCAAAGAGCATGTGACCTTCGCCTCCGACGATCAGTTGACTAAAAG
GTCTAGGACCAAGGCGCAGAAAATCACTGTAATGCCCATACATCGCGAGA
GCCAGGTGAAAAGTACTCCCTCGTACGGCGACAGCAACCACAACAACACA
CCGATGCAAACACCTTCACCACCACTTAGCACGGATTGCAATAAGCTGGA
TGAGGACGATTACTATAACTTCTCTGATGTGGAGGAACCCTCGATTCTAA
GCATGGCTGCTAGGTATCTCAAGAAACTCGAAGATGCCCGCCGTCGAAAG
CACGCACAAGCAAGCTTTCTAGACCAT

BO14965.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1958-RA 696 CG1958-PA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1958-RA 980 CG1958-RA 136..830 15..709 3475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7267039..7267733 15..709 3475 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:46:13 has no hits.

BO14965.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:34 Download gff for BO14965.complete
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 1..696 17..710 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:54 Download gff for BO14965.complete
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 128..836 8..717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:47 Download gff for BO14965.complete
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 138..830 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:28 Download gff for BO14965.complete
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 138..830 17..711 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:24 Download gff for BO14965.complete
Subject Subject Range Query Range Percent Splice Strand
CG1958-RA 138..830 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:24 Download gff for BO14965.complete
Subject Subject Range Query Range Percent Splice Strand
X 7267041..7267733 17..711 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:47 Download gff for BO14965.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7161074..7161766 17..711 99   Plus

BO14965.pep Sequence

Translation from 16 to 727

> BO14965.pep
MSKATKLRFALITEDVLDKLRPRSQSENARSKYMNEIYEAIRMAVNEVVD
EKMEQLNDTVNRMVEERVSKILDHHLTKGSLTGRSSSVGRKRDLDNREIK
GARYAAPATSISSLKVSNLKRGRSKRQNPTKEHVTFASDDQLTKRSRTKA
QKITVMPIHRESQVKSTPSYGDSNHNNTPMQTPSPPLSTDCNKLDEDDYY
NFSDVEEPSILSMAARYLKKLEDARRRKHAQASFLDH

BO14965.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1958-PA 231 CG1958-PA 1..231 1..231 1170 100 Plus