Clone Sequence Records
BO14966.5prime Sequence
374 bp (373 high quality bases) assembled on 2006-05-29
> BO14966.5prime
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAAGCAAGCTTTCTAGACC
BO14966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-PA | 345 | CG6852-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 607 | CG6852-RC | 178..519 | 17..358 | 1710 | 100 | Plus |
CG6852-RA | 595 | CG6852-RA | 166..507 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18869503..18869646 | 17..160 | 720 | 100 | Plus |
3L | 28110227 | 3L | 18869705..18869813 | 159..267 | 545 | 100 | Plus |
3L | 28110227 | 3L | 18869876..18869969 | 265..358 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:06:51 has no hits.
BO14966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:31 Download gff for
BO14966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-PA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:55 Download gff for
BO14966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-PA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:43 Download gff for
BO14966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..510 | 12..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:01 Download gff for
BO14966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..510 | 12..362 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:01 Download gff for
BO14966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18869495..18869646 | 12..160 | 98 | -> | Plus |
3L | 18869707..18869811 | 161..265 | 100 | -> | Plus |
3L | 18869877..18869972 | 266..362 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:43 Download gff for
BO14966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18862595..18862746 | 12..160 | 98 | -> | Plus |
arm_3L | 18862807..18862911 | 161..265 | 100 | -> | Plus |
arm_3L | 18862977..18863072 | 266..362 | 97 | | Plus |
BO14966.3prime Sequence
374 bp (373 high quality bases) assembled on 2006-05-29
> BO14966.3prime
ATGGTCTAGAAAGCTTGCTTGGAAATATTTTTGCAGAGCTCCTGTCTCGA
ACATTCGTTTGATGTCAGTGCCACCGCCAATGAATTTGCCATCGATAAAG
ACGCGGGGAACCGTTCTGGCACCGGTAATCTCGCCCAGAACTGCCTGAAT
TTCGTTGCCATCGGGATTTCCATCGAGTTCTATTATGGTGGCGTCCACAT
TGAGCTTTTTGAAGGGCTCTTTGGCCATCGTGCAGTAGGGACAGTAGGTC
TTGCTGAATATCACCACTTTGTTGCTGGCAATGGTGTTTTCAACGAATTT
CGCCTGCTTGGTGGACATGTCGACTATTGGGGATCTCAAAGCGGATCCAA
CTGCACCCATGTCGACTGATAACT
BO14966.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-PA | 345 | CG6852-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 607 | CG6852-RC | 178..519 | 360..19 | 1710 | 100 | Minus |
CG6852-RA | 595 | CG6852-RA | 166..507 | 360..19 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18869503..18869646 | 360..217 | 720 | 100 | Minus |
3L | 28110227 | 3L | 18869705..18869813 | 218..110 | 545 | 100 | Minus |
3L | 28110227 | 3L | 18869876..18869969 | 112..19 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:51:36 has no hits.
BO14966.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:30 Download gff for
BO14966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-PA | 1..345 | 15..360 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:53 Download gff for
BO14966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-PA | 1..345 | 15..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:08:03 Download gff for
BO14966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..510 | 15..365 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:56:21 Download gff for
BO14966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..510 | 15..365 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:56:21 Download gff for
BO14966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18869495..18869646 | 217..365 | 98 | -> | Minus |
3L | 18869707..18869811 | 112..216 | 100 | -> | Minus |
3L | 18869877..18869972 | 15..111 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:08:03 Download gff for
BO14966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18862595..18862746 | 217..365 | 98 | -> | Minus |
arm_3L | 18862807..18862911 | 112..216 | 100 | -> | Minus |
arm_3L | 18862977..18863072 | 15..111 | 97 | | Minus |
BO14966.complete Sequence
376 bp (376 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633304
> BO14966.complete
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAAGCAAGCTTTCTAGACCAT
BO14966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 345 | CG6852-PC | 1..342 | 17..358 | 1710 | 100 | Plus |
CG6852-RA | 345 | CG6852-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 607 | CG6852-RC | 178..519 | 17..358 | 1710 | 100 | Plus |
CG6852-RA | 595 | CG6852-RA | 166..507 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18869503..18869646 | 17..160 | 720 | 100 | Plus |
3L | 28110227 | 3L | 18869705..18869813 | 159..267 | 545 | 100 | Plus |
3L | 28110227 | 3L | 18869876..18869969 | 265..358 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:36:47 has no hits.
BO14966.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:14 Download gff for
BO14966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:51 Download gff for
BO14966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 40..392 | 12..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:26 Download gff for
BO14966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 166..507 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:14 Download gff for
BO14966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 40..392 | 12..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:34 Download gff for
BO14966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 166..507 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:34 Download gff for
BO14966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18869503..18869646 | 17..160 | 100 | -> | Plus |
3L | 18869707..18869811 | 161..265 | 100 | -> | Plus |
3L | 18869877..18869969 | 266..360 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:26 Download gff for
BO14966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18862603..18862746 | 17..160 | 100 | -> | Plus |
arm_3L | 18862807..18862911 | 161..265 | 100 | -> | Plus |
arm_3L | 18862977..18863069 | 266..360 | 97 | | Plus |
BO14966.pep Sequence
Translation from 16 to 376
> BO14966.pep
MGAVGSALRSPIVDMSTKQAKFVENTIASNKVVIFSKTYCPYCTMAKEPF
KKLNVDATIIELDGNPDGNEIQAVLGEITGARTVPRVFIDGKFIGGGTDI
KRMFETGALQKYFQASFLDH
BO14966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-PC | 114 | CG6852-PC | 1..114 | 1..114 | 585 | 100 | Plus |
CG6852-PA | 114 | CG6852-PA | 1..114 | 1..114 | 585 | 100 | Plus |
Grx-1-PA | 116 | CG7975-PA | 1..116 | 1..114 | 415 | 68.1 | Plus |