Clone BO14966 Report

Search the DGRC for BO14966

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG6852-RA
Protein status:BO14966.pep: validated full length
Sequenced Size:376

Clone Sequence Records

BO14966.5prime Sequence

374 bp (373 high quality bases) assembled on 2006-05-29

> BO14966.5prime
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAAGCAAGCTTTCTAGACC

BO14966.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-PA 345 CG6852-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 607 CG6852-RC 178..519 17..358 1710 100 Plus
CG6852-RA 595 CG6852-RA 166..507 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18869503..18869646 17..160 720 100 Plus
3L 28110227 3L 18869705..18869813 159..267 545 100 Plus
3L 28110227 3L 18869876..18869969 265..358 470 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:06:51 has no hits.

BO14966.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:31 Download gff for BO14966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-PA 1..345 17..362 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:55 Download gff for BO14966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-PA 1..345 17..362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:43 Download gff for BO14966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..510 12..362 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:01 Download gff for BO14966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..510 12..362 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:01 Download gff for BO14966.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18869495..18869646 12..160 98 -> Plus
3L 18869707..18869811 161..265 100 -> Plus
3L 18869877..18869972 266..362 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:43 Download gff for BO14966.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18862595..18862746 12..160 98 -> Plus
arm_3L 18862807..18862911 161..265 100 -> Plus
arm_3L 18862977..18863072 266..362 97   Plus

BO14966.3prime Sequence

374 bp (373 high quality bases) assembled on 2006-05-29

> BO14966.3prime
ATGGTCTAGAAAGCTTGCTTGGAAATATTTTTGCAGAGCTCCTGTCTCGA
ACATTCGTTTGATGTCAGTGCCACCGCCAATGAATTTGCCATCGATAAAG
ACGCGGGGAACCGTTCTGGCACCGGTAATCTCGCCCAGAACTGCCTGAAT
TTCGTTGCCATCGGGATTTCCATCGAGTTCTATTATGGTGGCGTCCACAT
TGAGCTTTTTGAAGGGCTCTTTGGCCATCGTGCAGTAGGGACAGTAGGTC
TTGCTGAATATCACCACTTTGTTGCTGGCAATGGTGTTTTCAACGAATTT
CGCCTGCTTGGTGGACATGTCGACTATTGGGGATCTCAAAGCGGATCCAA
CTGCACCCATGTCGACTGATAACT

BO14966.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-PA 345 CG6852-RA 1..342 360..19 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 607 CG6852-RC 178..519 360..19 1710 100 Minus
CG6852-RA 595 CG6852-RA 166..507 360..19 1710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18869503..18869646 360..217 720 100 Minus
3L 28110227 3L 18869705..18869813 218..110 545 100 Minus
3L 28110227 3L 18869876..18869969 112..19 470 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:51:36 has no hits.

BO14966.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:30 Download gff for BO14966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-PA 1..345 15..360 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:53 Download gff for BO14966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-PA 1..345 15..360 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:08:03 Download gff for BO14966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..510 15..365 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:56:21 Download gff for BO14966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..510 15..365 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:56:21 Download gff for BO14966.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18869495..18869646 217..365 98 -> Minus
3L 18869707..18869811 112..216 100 -> Minus
3L 18869877..18869972 15..111 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:08:03 Download gff for BO14966.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18862595..18862746 217..365 98 -> Minus
arm_3L 18862807..18862911 112..216 100 -> Minus
arm_3L 18862977..18863072 15..111 97   Minus

BO14966.complete Sequence

376 bp (376 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633304

> BO14966.complete
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAAGCAAGCTTTCTAGACCAT

BO14966.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 345 CG6852-PC 1..342 17..358 1710 100 Plus
CG6852-RA 345 CG6852-PA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 607 CG6852-RC 178..519 17..358 1710 100 Plus
CG6852-RA 595 CG6852-RA 166..507 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18869503..18869646 17..160 720 100 Plus
3L 28110227 3L 18869705..18869813 159..267 545 100 Plus
3L 28110227 3L 18869876..18869969 265..358 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:36:47 has no hits.

BO14966.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:14 Download gff for BO14966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 1..345 17..362 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:51 Download gff for BO14966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 40..392 12..362 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:26 Download gff for BO14966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 166..507 17..360 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:14 Download gff for BO14966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 40..392 12..362 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:34 Download gff for BO14966.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 166..507 17..360 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:34 Download gff for BO14966.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18869503..18869646 17..160 100 -> Plus
3L 18869707..18869811 161..265 100 -> Plus
3L 18869877..18869969 266..360 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:26 Download gff for BO14966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18862603..18862746 17..160 100 -> Plus
arm_3L 18862807..18862911 161..265 100 -> Plus
arm_3L 18862977..18863069 266..360 97   Plus

BO14966.pep Sequence

Translation from 16 to 376

> BO14966.pep
MGAVGSALRSPIVDMSTKQAKFVENTIASNKVVIFSKTYCPYCTMAKEPF
KKLNVDATIIELDGNPDGNEIQAVLGEITGARTVPRVFIDGKFIGGGTDI
KRMFETGALQKYFQASFLDH

BO14966.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-PC 114 CG6852-PC 1..114 1..114 585 100 Plus
CG6852-PA 114 CG6852-PA 1..114 1..114 585 100 Plus
Grx-1-PA 116 CG7975-PA 1..116 1..114 415 68.1 Plus