Clone Sequence Records
BO14968.3prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-29
> BO14968.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTCCCGCTCGGTTATGGCCCAAGCAC
TGGGCACCGGTGTTCTTAGGGGTCTTGCATCAGAGTCACCGATTTTTCCT
CGCATCATGGGCTTCCTCAAAGGCAAGCTCCTTAGCCGGGCATTTTTATA
TAGCTTTCGGGCACTTTTGGCCAATTCGTTCATAGACTTTTCGTATCGAA
TGAATGCGGTTTTCACCTCGTTCCTCGCGGAATCTGTCGAATTTCGACGG
AGCAGACTAACGGCTGTTGGAAGGCGGTCGCCCGCTTGGGGGCCACGCCC
CCATTCGACTGTTGTCTCTACTGCCTTCTTTTCGGAGACATCAGACTTCC
GATTCCTTTGGGCGGACAAGGACTGCATGGCCAGTAAATGTCGCCTAGTG
CCATAGAAACACAATTGCTGCACACAGGGCGTTATATAGATCAAACACTT
GCTTAATTTATTTCGGGGCTGCATGTCGACTGATAACT
BO14968.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-PA | 459 | CG1835-RA | 1..456 | 474..19 | 2280 | 100 | Minus |
CG1835-PB | 459 | CG1835-RB | 1..456 | 474..19 | 2255 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 663 | CG1835-RA | 104..559 | 474..19 | 2280 | 100 | Minus |
CG1835-RC | 571 | CG1835-RC | 73..467 | 413..19 | 1975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20669107..20669432 | 413..88 | 1630 | 100 | Minus |
X | 23542271 | X | 20669494..20669565 | 90..19 | 360 | 100 | Minus |
X | 23542271 | X | 20670669..20670740 | 90..19 | 345 | 98.6 | Minus |
X | 23542271 | X | 20669889..20669959 | 90..19 | 310 | 98.6 | Minus |
X | 23542271 | X | 20670283..20670353 | 90..19 | 310 | 98.6 | Minus |
X | 23542271 | X | 20668431..20668491 | 474..414 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:18:15 has no hits.
BO14968.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:34 Download gff for
BO14968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-PA | 1..459 | 18..474 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:58 Download gff for
BO14968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-PA | 1..459 | 18..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:38 Download gff for
BO14968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..564 | 12..481 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:23 Download gff for
BO14968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..564 | 12..481 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:23 Download gff for
BO14968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20668423..20668491 | 414..481 | 95 | -> | Minus |
X | 20669107..20669430 | 90..413 | 100 | -> | Minus |
X | 20669495..20669570 | 12..89 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:38 Download gff for
BO14968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20539450..20539518 | 414..481 | 95 | -> | Minus |
arm_X | 20540134..20540457 | 90..413 | 100 | -> | Minus |
arm_X | 20540522..20540597 | 12..89 | 96 | | Minus |
BO14968.5prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-29
> BO14968.5prime
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAAGCAAGCTTTCTAGACC
BO14968.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-PA | 459 | CG1835-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
CG1835-PB | 459 | CG1835-RB | 1..456 | 17..472 | 2255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 663 | CG1835-RA | 104..559 | 17..472 | 2280 | 100 | Plus |
CG1835-RC | 571 | CG1835-RC | 73..467 | 78..472 | 1975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20669107..20669432 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 20669494..20669565 | 401..472 | 360 | 100 | Plus |
X | 23542271 | X | 20670669..20670740 | 401..472 | 345 | 98.6 | Plus |
X | 23542271 | X | 20669889..20669959 | 401..472 | 310 | 98.6 | Plus |
X | 23542271 | X | 20670283..20670353 | 401..472 | 310 | 98.6 | Plus |
X | 23542271 | X | 20668431..20668491 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 08:03:05 has no hits.
BO14968.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:35 Download gff for
BO14968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-PA | 1..459 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:00 Download gff for
BO14968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-PA | 1..459 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:13 Download gff for
BO14968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..564 | 10..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:17:06 Download gff for
BO14968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..564 | 10..479 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:17:06 Download gff for
BO14968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20668423..20668491 | 10..77 | 95 | -> | Plus |
X | 20669107..20669430 | 78..401 | 100 | -> | Plus |
X | 20669495..20669570 | 402..479 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:13 Download gff for
BO14968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20539450..20539518 | 10..77 | 95 | -> | Plus |
arm_X | 20540134..20540457 | 78..401 | 100 | -> | Plus |
arm_X | 20540522..20540597 | 402..479 | 96 | | Plus |
BO14968.complete Sequence
490 bp assembled on 2007-10-17
GenBank Submission: FJ633305
> BO14968.complete
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAAGCAAGCTTTCTAGACCAT
BO14968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 459 | CG1835-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
CG1835-RC | 363 | CG1835-PC | 1..360 | 113..472 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 663 | CG1835-RA | 104..559 | 17..472 | 2280 | 100 | Plus |
CG1835-RC | 571 | CG1835-RC | 73..467 | 78..472 | 1975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20669107..20669432 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 20669494..20669565 | 401..472 | 360 | 100 | Plus |
X | 23542271 | X | 20670669..20670740 | 401..472 | 345 | 98.6 | Plus |
X | 23542271 | X | 20669889..20669959 | 401..472 | 310 | 98.6 | Plus |
X | 23542271 | X | 20670283..20670353 | 401..472 | 310 | 98.6 | Plus |
X | 23542271 | X | 20668431..20668491 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:48:39 has no hits.
BO14968.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:35 Download gff for
BO14968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 1..459 | 17..473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:56 Download gff for
BO14968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 102..570 | 10..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:18 Download gff for
BO14968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 104..559 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:25 Download gff for
BO14968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 110..565 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:08 Download gff for
BO14968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 104..559 | 17..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:08 Download gff for
BO14968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20668431..20668491 | 17..77 | 100 | -> | Plus |
X | 20669107..20669430 | 78..401 | 100 | -> | Plus |
X | 20669495..20669565 | 402..474 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:18 Download gff for
BO14968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20539458..20539518 | 17..77 | 100 | -> | Plus |
arm_X | 20540134..20540457 | 78..401 | 100 | -> | Plus |
arm_X | 20540522..20540592 | 402..474 | 97 | | Plus |
BO14968.pep Sequence
Translation from 16 to 490
> BO14968.pep
MQPRNKLSKCLIYITPCVQQLCFYGTRRHLLAMQSLSAQRNRKSDVSEKK
AVETTVEWGRGPQAGDRLPTAVSLLRRNSTDSARNEVKTAFIRYEKSMNE
LAKSARKLYKNARLRSLPLRKPMMRGKIGDSDARPLRTPVPSAWAITERE
NKASFLDH
BO14968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-PA | 152 | CG1835-PA | 1..152 | 1..152 | 780 | 100 | Plus |
CG1835-PC | 120 | CG1835-PC | 1..120 | 33..152 | 604 | 100 | Plus |