Clone BO14968 Report

Search the DGRC for BO14968

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG1835-RA
Protein status:BO14968.pep: validated full length
Sequenced Size:490

Clone Sequence Records

BO14968.3prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-29

> BO14968.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTCCCGCTCGGTTATGGCCCAAGCAC
TGGGCACCGGTGTTCTTAGGGGTCTTGCATCAGAGTCACCGATTTTTCCT
CGCATCATGGGCTTCCTCAAAGGCAAGCTCCTTAGCCGGGCATTTTTATA
TAGCTTTCGGGCACTTTTGGCCAATTCGTTCATAGACTTTTCGTATCGAA
TGAATGCGGTTTTCACCTCGTTCCTCGCGGAATCTGTCGAATTTCGACGG
AGCAGACTAACGGCTGTTGGAAGGCGGTCGCCCGCTTGGGGGCCACGCCC
CCATTCGACTGTTGTCTCTACTGCCTTCTTTTCGGAGACATCAGACTTCC
GATTCCTTTGGGCGGACAAGGACTGCATGGCCAGTAAATGTCGCCTAGTG
CCATAGAAACACAATTGCTGCACACAGGGCGTTATATAGATCAAACACTT
GCTTAATTTATTTCGGGGCTGCATGTCGACTGATAACT

BO14968.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-PA 459 CG1835-RA 1..456 474..19 2280 100 Minus
CG1835-PB 459 CG1835-RB 1..456 474..19 2255 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 663 CG1835-RA 104..559 474..19 2280 100 Minus
CG1835-RC 571 CG1835-RC 73..467 413..19 1975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20669107..20669432 413..88 1630 100 Minus
X 23542271 X 20669494..20669565 90..19 360 100 Minus
X 23542271 X 20670669..20670740 90..19 345 98.6 Minus
X 23542271 X 20669889..20669959 90..19 310 98.6 Minus
X 23542271 X 20670283..20670353 90..19 310 98.6 Minus
X 23542271 X 20668431..20668491 474..414 305 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:18:15 has no hits.

BO14968.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:34 Download gff for BO14968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-PA 1..459 18..474 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:58 Download gff for BO14968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-PA 1..459 18..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:38 Download gff for BO14968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..564 12..481 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:23 Download gff for BO14968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..564 12..481 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:23 Download gff for BO14968.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20668423..20668491 414..481 95 -> Minus
X 20669107..20669430 90..413 100 -> Minus
X 20669495..20669570 12..89 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:38 Download gff for BO14968.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20539450..20539518 414..481 95 -> Minus
arm_X 20540134..20540457 90..413 100 -> Minus
arm_X 20540522..20540597 12..89 96   Minus

BO14968.5prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-29

> BO14968.5prime
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAAGCAAGCTTTCTAGACC

BO14968.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-PA 459 CG1835-RA 1..456 17..472 2280 100 Plus
CG1835-PB 459 CG1835-RB 1..456 17..472 2255 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 663 CG1835-RA 104..559 17..472 2280 100 Plus
CG1835-RC 571 CG1835-RC 73..467 78..472 1975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20669107..20669432 78..403 1630 100 Plus
X 23542271 X 20669494..20669565 401..472 360 100 Plus
X 23542271 X 20670669..20670740 401..472 345 98.6 Plus
X 23542271 X 20669889..20669959 401..472 310 98.6 Plus
X 23542271 X 20670283..20670353 401..472 310 98.6 Plus
X 23542271 X 20668431..20668491 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-02 08:03:05 has no hits.

BO14968.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:35 Download gff for BO14968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-PA 1..459 17..473 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:00 Download gff for BO14968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-PA 1..459 17..473 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:13 Download gff for BO14968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..564 10..479 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:17:06 Download gff for BO14968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..564 10..479 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:17:06 Download gff for BO14968.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20668423..20668491 10..77 95 -> Plus
X 20669107..20669430 78..401 100 -> Plus
X 20669495..20669570 402..479 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:13 Download gff for BO14968.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20539450..20539518 10..77 95 -> Plus
arm_X 20540134..20540457 78..401 100 -> Plus
arm_X 20540522..20540597 402..479 96   Plus

BO14968.complete Sequence

490 bp assembled on 2007-10-17

GenBank Submission: FJ633305

> BO14968.complete
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAAGCAAGCTTTCTAGACCAT

BO14968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 459 CG1835-PA 1..456 17..472 2280 100 Plus
CG1835-RC 363 CG1835-PC 1..360 113..472 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 663 CG1835-RA 104..559 17..472 2280 100 Plus
CG1835-RC 571 CG1835-RC 73..467 78..472 1975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20669107..20669432 78..403 1630 100 Plus
X 23542271 X 20669494..20669565 401..472 360 100 Plus
X 23542271 X 20670669..20670740 401..472 345 98.6 Plus
X 23542271 X 20669889..20669959 401..472 310 98.6 Plus
X 23542271 X 20670283..20670353 401..472 310 98.6 Plus
X 23542271 X 20668431..20668491 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:48:39 has no hits.

BO14968.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:35 Download gff for BO14968.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 1..459 17..473 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:56 Download gff for BO14968.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 102..570 10..479 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:18 Download gff for BO14968.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 104..559 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:25 Download gff for BO14968.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 110..565 17..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:08 Download gff for BO14968.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 104..559 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:08 Download gff for BO14968.complete
Subject Subject Range Query Range Percent Splice Strand
X 20668431..20668491 17..77 100 -> Plus
X 20669107..20669430 78..401 100 -> Plus
X 20669495..20669565 402..474 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:18 Download gff for BO14968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20539458..20539518 17..77 100 -> Plus
arm_X 20540134..20540457 78..401 100 -> Plus
arm_X 20540522..20540592 402..474 97   Plus

BO14968.pep Sequence

Translation from 16 to 490

> BO14968.pep
MQPRNKLSKCLIYITPCVQQLCFYGTRRHLLAMQSLSAQRNRKSDVSEKK
AVETTVEWGRGPQAGDRLPTAVSLLRRNSTDSARNEVKTAFIRYEKSMNE
LAKSARKLYKNARLRSLPLRKPMMRGKIGDSDARPLRTPVPSAWAITERE
NKASFLDH

BO14968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-PA 152 CG1835-PA 1..152 1..152 780 100 Plus
CG1835-PC 120 CG1835-PC 1..120 33..152 604 100 Plus