Clone Sequence Records
BO14969.5prime Sequence
195 bp (157 high quality bases) assembled on 2006-05-29
> BO14969.5prime
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAGGCAAAAGTGCATCAAGTTTGACATGACTCC
BO14969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30052-PA | 639 | Obp49a-RA | 1..179 | 17..195 | 870 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 780 | CG30052-RA | 36..214 | 17..195 | 880 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:01:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12690686..12690817 | 195..64 | 645 | 99.2 | Minus |
2R | 25286936 | 2R | 12690873..12690920 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:01:27 has no hits.
BO14969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:37 Download gff for
BO14969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30052-PA | 1..179 | 17..195 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:03 Download gff for
BO14969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30052-PA | 1..179 | 17..195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:17 Download gff for
BO14969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..214 | 17..195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:36 Download gff for
BO14969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..214 | 17..195 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:36 Download gff for
BO14969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12690686..12690816 | 65..195 | 99 | <- | Minus |
2R | 12690873..12690920 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:17 Download gff for
BO14969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8578191..8578321 | 65..195 | 99 | <- | Minus |
arm_2R | 8578378..8578425 | 17..64 | 100 | | Minus |
BO14969.3prime Sequence
668 bp (667 high quality bases) assembled on 2006-05-29
> BO14969.3prime
ATGGTCTAGAAAGCTTGCCATATCTTCGGCGGAAGGAGGAGGACCACGAG
GTGGCTTGCACTTGGTGAAGAACTCTTTCATGTCAGTGCACTGCTGGGAA
TCATTCCGTATTGAGTCTGGGCAATTCTTCATCATATTGCGGAACACACA
GCCCATGAGGTGACCAGCATCGTGAGGACACATGGGGAATCCGGGTGGCG
GAGATGGAGCCGGACGAGGAGGTAAATTGGCCTCGAAATCCGCGACTTTG
GTTGCACAGGTGGTGAAGGCCTGGGTGGCCGTGGTCTGCAGATCAGAACT
GTCCTCGAAGACCTCCTGCAAGTAGGCGTTCAGCTTTGCCTCATCCAGTT
TCCGGTTTTGATAGATTCCAGTCTCGTTAAAGATGCAGGAGAAGAAGCAT
GGTGGGGGATGCGGATGATGATGACGACGCTTGCTCTCAAAGGATCCACT
TGCTTCCCCATCCGGCGGCGGCGGCGGAGTCATGTCAAACTTGATGCACT
TTTGCTTCAACTCGGCGGTCACGAAGTCCGGCATTGGACAACAGGTTTTG
GGATTGACAAACGATGGCCGCTTGCTGCAGTCCACGTCAGCCGAGACGGC
TGCATTCAGGCAGAACCCGACAACGAGCAGTAATAGCTGCGATTTTGAAA
GCATGTCGACTGATAACT
BO14969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30052-PA | 639 | Obp49a-RA | 1..636 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 780 | CG30052-RA | 36..671 | 654..19 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12690168..12690548 | 19..399 | 1905 | 100 | Plus |
2R | 25286936 | 2R | 12690610..12690817 | 400..607 | 1040 | 100 | Plus |
2R | 25286936 | 2R | 12690873..12690920 | 607..654 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:46:36 has no hits.
BO14969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:36 Download gff for
BO14969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30052-PA | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:01 Download gff for
BO14969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30052-PA | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:20 Download gff for
BO14969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..675 | 14..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:21 Download gff for
BO14969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..675 | 14..654 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:21 Download gff for
BO14969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12690164..12690548 | 14..399 | 99 | <- | Plus |
2R | 12690610..12690816 | 400..606 | 100 | <- | Plus |
2R | 12690873..12690920 | 607..654 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:20 Download gff for
BO14969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8577669..8578053 | 14..399 | 99 | <- | Plus |
arm_2R | 8578115..8578321 | 400..606 | 100 | <- | Plus |
arm_2R | 8578378..8578425 | 607..654 | 100 | | Plus |
BO14969.complete Sequence
670 bp (670 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633306
> BO14969.complete
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAAGCAAAAGTGCATCAAGTTTGACATGACTCCGCCGC
CGCCGCCGGATGGGGAAGCAAGTGGATCCTTTGAGAGCAAGCGTCGTCAT
CATCATCCGCATCCCCCACCATGCTTCTTCTCCTGCATCTTTAACGAGAC
TGGAATCTATCAAAACCGGAAACTGGATGAGGCAAAGCTGAACGCCTACT
TGCAGGAGGTCTTCGAGGACAGTTCTGATCTGCAGACCACGGCCACCCAG
GCCTTCACCACCTGTGCAACCAAAGTCGCGGATTTCGAGGCCAATTTACC
TCCTCGTCCGGCTCCATCTCCGCCACCCGGATTCCCCATGTGTCCTCACG
ATGCTGGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAGAATTGC
CCAGACTCAATACGGAATGATTCCCAGCAGTGCACTGACATGAAAGAGTT
CTTCACCAAGTGCAAGCCACCTCGTGGTCCTCCTCCTTCCGCCGAAGATA
TGGCAAGCTTTCTAGACCAT
BO14969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 639 | CG30052-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 780 | CG30052-RA | 36..671 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12690168..12690548 | 652..272 | 1905 | 100 | Minus |
2R | 25286936 | 2R | 12690610..12690817 | 271..64 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 12690873..12690920 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:29 has no hits.
BO14969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:56 Download gff for
BO14969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:31 Download gff for
BO14969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 12..651 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:15 Download gff for
BO14969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..671 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:56 Download gff for
BO14969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 12..651 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:42 Download gff for
BO14969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..671 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:42 Download gff for
BO14969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12690166..12690548 | 272..654 | 99 | <- | Minus |
2R | 12690610..12690816 | 65..271 | 100 | <- | Minus |
2R | 12690873..12690920 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:15 Download gff for
BO14969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8578378..8578425 | 17..64 | 100 | | Minus |
arm_2R | 8577671..8578053 | 272..654 | 99 | <- | Minus |
arm_2R | 8578115..8578321 | 65..271 | 100 | <- | Minus |
BO14969.pep Sequence
Translation from 16 to 670
> BO14969.pep
MLSKSQLLLLVVGFCLNAAVSADVDCSKRPSFVNPKTCCPMPDFVTAELK
QKCIKFDMTPPPPPDGEASGSFESKRRHHHPHPPPCFFSCIFNETGIYQN
RKLDEAKLNAYLQEVFEDSSDLQTTATQAFTTCATKVADFEANLPPRPAP
SPPPGFPMCPHDAGHLMGCVFRNMMKNCPDSIRNDSQQCTDMKEFFTKCK
PPRGPPPSAEDMASFLDH
BO14969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-PA | 212 | CG30052-PA | 1..212 | 1..212 | 1180 | 100 | Plus |
Obp50e-PA | 196 | CG13939-PA | 20..196 | 22..209 | 174 | 27.6 | Plus |
Obp47b-PA | 199 | CG13208-PA | 1..195 | 2..199 | 143 | 24.3 | Plus |