Clone BO14969 Report

Search the DGRC for BO14969

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptObp49a-RA
Protein status:BO14969.pep: validated full length
Sequenced Size:670

Clone Sequence Records

BO14969.5prime Sequence

195 bp (157 high quality bases) assembled on 2006-05-29

> BO14969.5prime
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAGGCAAAAGTGCATCAAGTTTGACATGACTCC

BO14969.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30052-PA 639 Obp49a-RA 1..179 17..195 870 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 780 CG30052-RA 36..214 17..195 880 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12690686..12690817 195..64 645 99.2 Minus
2R 25286936 2R 12690873..12690920 64..17 240 100 Minus
Blast to na_te.dros performed on 2015-02-09 11:01:27 has no hits.

BO14969.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:37 Download gff for BO14969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30052-PA 1..179 17..195 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:03 Download gff for BO14969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30052-PA 1..179 17..195 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:17 Download gff for BO14969.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..214 17..195 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:36 Download gff for BO14969.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..214 17..195 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:36 Download gff for BO14969.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12690686..12690816 65..195 99 <- Minus
2R 12690873..12690920 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:17 Download gff for BO14969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8578191..8578321 65..195 99 <- Minus
arm_2R 8578378..8578425 17..64 100   Minus

BO14969.3prime Sequence

668 bp (667 high quality bases) assembled on 2006-05-29

> BO14969.3prime
ATGGTCTAGAAAGCTTGCCATATCTTCGGCGGAAGGAGGAGGACCACGAG
GTGGCTTGCACTTGGTGAAGAACTCTTTCATGTCAGTGCACTGCTGGGAA
TCATTCCGTATTGAGTCTGGGCAATTCTTCATCATATTGCGGAACACACA
GCCCATGAGGTGACCAGCATCGTGAGGACACATGGGGAATCCGGGTGGCG
GAGATGGAGCCGGACGAGGAGGTAAATTGGCCTCGAAATCCGCGACTTTG
GTTGCACAGGTGGTGAAGGCCTGGGTGGCCGTGGTCTGCAGATCAGAACT
GTCCTCGAAGACCTCCTGCAAGTAGGCGTTCAGCTTTGCCTCATCCAGTT
TCCGGTTTTGATAGATTCCAGTCTCGTTAAAGATGCAGGAGAAGAAGCAT
GGTGGGGGATGCGGATGATGATGACGACGCTTGCTCTCAAAGGATCCACT
TGCTTCCCCATCCGGCGGCGGCGGCGGAGTCATGTCAAACTTGATGCACT
TTTGCTTCAACTCGGCGGTCACGAAGTCCGGCATTGGACAACAGGTTTTG
GGATTGACAAACGATGGCCGCTTGCTGCAGTCCACGTCAGCCGAGACGGC
TGCATTCAGGCAGAACCCGACAACGAGCAGTAATAGCTGCGATTTTGAAA
GCATGTCGACTGATAACT

BO14969.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30052-PA 639 Obp49a-RA 1..636 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 780 CG30052-RA 36..671 654..19 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12690168..12690548 19..399 1905 100 Plus
2R 25286936 2R 12690610..12690817 400..607 1040 100 Plus
2R 25286936 2R 12690873..12690920 607..654 240 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:46:36 has no hits.

BO14969.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:36 Download gff for BO14969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30052-PA 1..639 15..654 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:01 Download gff for BO14969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30052-PA 1..639 15..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:20 Download gff for BO14969.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..675 14..654 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:21 Download gff for BO14969.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..675 14..654 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:21 Download gff for BO14969.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12690164..12690548 14..399 99 <- Plus
2R 12690610..12690816 400..606 100 <- Plus
2R 12690873..12690920 607..654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:20 Download gff for BO14969.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8577669..8578053 14..399 99 <- Plus
arm_2R 8578115..8578321 400..606 100 <- Plus
arm_2R 8578378..8578425 607..654 100   Plus

BO14969.complete Sequence

670 bp (670 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633306

> BO14969.complete
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAAGCAAAAGTGCATCAAGTTTGACATGACTCCGCCGC
CGCCGCCGGATGGGGAAGCAAGTGGATCCTTTGAGAGCAAGCGTCGTCAT
CATCATCCGCATCCCCCACCATGCTTCTTCTCCTGCATCTTTAACGAGAC
TGGAATCTATCAAAACCGGAAACTGGATGAGGCAAAGCTGAACGCCTACT
TGCAGGAGGTCTTCGAGGACAGTTCTGATCTGCAGACCACGGCCACCCAG
GCCTTCACCACCTGTGCAACCAAAGTCGCGGATTTCGAGGCCAATTTACC
TCCTCGTCCGGCTCCATCTCCGCCACCCGGATTCCCCATGTGTCCTCACG
ATGCTGGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAGAATTGC
CCAGACTCAATACGGAATGATTCCCAGCAGTGCACTGACATGAAAGAGTT
CTTCACCAAGTGCAAGCCACCTCGTGGTCCTCCTCCTTCCGCCGAAGATA
TGGCAAGCTTTCTAGACCAT

BO14969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 639 CG30052-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 780 CG30052-RA 36..671 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12690168..12690548 652..272 1905 100 Minus
2R 25286936 2R 12690610..12690817 271..64 1040 100 Minus
2R 25286936 2R 12690873..12690920 64..17 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:41:29 has no hits.

BO14969.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:56 Download gff for BO14969.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 1..639 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:31 Download gff for BO14969.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 12..651 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:15 Download gff for BO14969.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..671 17..654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:56 Download gff for BO14969.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 12..651 17..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:42 Download gff for BO14969.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..671 17..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:42 Download gff for BO14969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12690166..12690548 272..654 99 <- Minus
2R 12690610..12690816 65..271 100 <- Minus
2R 12690873..12690920 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:15 Download gff for BO14969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8578378..8578425 17..64 100   Minus
arm_2R 8577671..8578053 272..654 99 <- Minus
arm_2R 8578115..8578321 65..271 100 <- Minus

BO14969.pep Sequence

Translation from 16 to 670

> BO14969.pep
MLSKSQLLLLVVGFCLNAAVSADVDCSKRPSFVNPKTCCPMPDFVTAELK
QKCIKFDMTPPPPPDGEASGSFESKRRHHHPHPPPCFFSCIFNETGIYQN
RKLDEAKLNAYLQEVFEDSSDLQTTATQAFTTCATKVADFEANLPPRPAP
SPPPGFPMCPHDAGHLMGCVFRNMMKNCPDSIRNDSQQCTDMKEFFTKCK
PPRGPPPSAEDMASFLDH

BO14969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-PA 212 CG30052-PA 1..212 1..212 1180 100 Plus
Obp50e-PA 196 CG13939-PA 20..196 22..209 174 27.6 Plus
Obp47b-PA 199 CG13208-PA 1..195 2..199 143 24.3 Plus