Clone Sequence Records
BO14970.3prime Sequence
885 bp (757 high quality bases) assembled on 2006-05-29
> BO14970.3prime
ATGGTCTAGAAAGCTTGCGCACTGGAGGGCAATTCCCACGCCGAACCGAT
GGTTTCCGTCCTTAAAGTTGTTGCAATCCAGCACGGCGGATATGGAGGCG
GTGATGCCGTCGCGCAGTTTCTGTTCATAGCCCAGGCCCAGCTCCACCAG
GTTGTTGACCTTGGCGCGTACGAGGGCATCCTCCTCCAAGTGGTAGATCA
TGCCCAGATTGACGACCACATCTCCGCCCTGCTGTTCACCCTCGGCAGCT
TCGCCGCCGCCGGCTCCCTTGGTTACCTCGATACCGGCATCGATCTTCTC
GCTCGCCTTGTAGAACAGCGAGGCCAACCAGGTGTCGCCGTTCTTCAGCT
CGCCATGGAGGGTGGCAGTTTCATTTGTCCAACCAAGGGCCACCTTCCAG
CCCTTGAGTTCGGTGTTGCCAACGTCAAATTCGGTGCCCACGCCGCCGAG
GAACTCCTTGTGGCCCACAACCAGCGAACAGTTGAGTATCGGCTCCGAGT
TCAGTCCAATGTCGGCCAGGAAGTTAAAGTTGTCCTGGGCATAGCCCATC
TTGAACTTGCCATCCGCCTCATTTGATCCCGGCTGAAACTTGGCCTCGAC
GGCCAACATCAGGCCCTGTGCCAACTTATCCCGGTGCATAATCTCACCGA
AGAGCCAGTTCTCCGTGTTCCATCGCTCGGTTAGGGTCAGGCCTTGGTCC
TCGATCTTGTACTTGCTCTGAAGCGAGCCGGTCACCTTGCTGTTGTCCTG
GCTGGCGAAGCCGGTGGTGAAGAACTCAATCCCCGAATTGGTCAGGGTCT
TGCAGTCGATCTGCCAGATGCCCGGATGGTAGCCGCGCTTGAAGAGATCG
CGGGCCAGCTTGCCCAGATCTGGGTATGTCGGTGT
BO14970.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17137-PA | 882 | Porin2-RA | 13..879 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 100..966 | 885..19 | 4335 | 100 | Minus |
| Porin2-RA | 1128 | CG17137-RA | 159..1025 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10845891..10846218 | 19..346 | 1640 | 100 | Plus |
| 2L | 23513712 | 2L | 10846573..10846886 | 572..885 | 1570 | 100 | Plus |
| 2L | 23513712 | 2L | 10846281..10846506 | 346..571 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:50:18 has no hits.
BO14970.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:38 Download gff for
BO14970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17137-PA | 13..882 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:04 Download gff for
BO14970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17137-PA | 13..882 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:32:10 Download gff for
BO14970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 159..1028 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:54 Download gff for
BO14970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 159..1028 | 15..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:54 Download gff for
BO14970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10846573..10846886 | 572..885 | 100 | | Plus |
| 2L | 10845887..10846218 | 15..346 | 99 | <- | Plus |
| 2L | 10846282..10846506 | 347..571 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:32:10 Download gff for
BO14970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10845887..10846218 | 15..346 | 99 | <- | Plus |
| arm_2L | 10846282..10846506 | 347..571 | 100 | <- | Plus |
| arm_2L | 10846573..10846886 | 572..885 | 100 | | Plus |
BO14970.5prime Sequence
850 bp (788 high quality bases) assembled on 2006-05-29
> BO14970.5prime
GAAGTTATCAGTCGACATGGCCGCCAAAACACCGACATACCCAGATCTGG
GCAAGCTGGCCCGCGATCTCTTCAAGCGCGGCTACCATCCGGGCATCTGG
CAGATCGACTGCAAGACCCTGACCAATTCGGGGATTGAGTTCTTCACCAC
CGGCTTCGCCAGCCAGGACAACAGCAAGGTGACCGGCTCGCTTCAGAGCA
AGTACAAGATCGAGGACCAAGGCCTGACCCTAACCGAGCGATGGAACACG
GAGAACTGGCTCTTCGGTGAGATTATGCACCGGGATAAGTTGGCACAGGG
CCTGATGTTGGCCGTCGAGGCCAAGTTTCAGCCGGGATCAAATGAGGCGG
ATGGCAAGTTCAAGATGGGCTATGCCCAGGACAACTTTAACTTCCTGGCC
GACATTGGACTGAACTCGGAGCCGATACTCAACTGTTCGCTGGTTGTGGG
CCACAAGGAGTTCCTCGGCGGCGTGGGCACCGAATTTGACGTTGGCAACA
CCGAACTCAAGGGCTGGAAGGTGGCCCTTGGTTGGACAAATGAAACTGCC
ACCCTCCATGGCGAGCTGAAGAACGGCGACACCTGGTTGGCCTCGCTGTT
CTACAAGGCGAGCGAGAAGATCGATGCCGGTATCGAGGTAACCAAGGGAG
CCGGCGGCGGCGAAGCTGCCGAGGGTGAACAGCAGGGCGGAGATGTGGTC
GTCAATCTGGGCATGATCTACCACTTGGAGGAGGATGCCCTCGTACGCGC
CAAGGTCAACAACCTGGTGGAGCTGGGCCTGGGCTATGAACAGAAACTGC
GCGACGGCATCCACGCCTCCATATCCGCCGTGCTGGATTGCAACAACTTT
BO14970.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17137-PA | 882 | Porin2-RA | 1..834 | 17..850 | 4120 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 88..921 | 17..850 | 4140 | 99.8 | Plus |
| Porin2-RA | 1128 | CG17137-RA | 147..980 | 17..850 | 4140 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10846573..10846898 | 342..17 | 1630 | 100 | Minus |
| 2L | 23513712 | 2L | 10845936..10846218 | 850..568 | 1385 | 99.3 | Minus |
| 2L | 23513712 | 2L | 10846281..10846506 | 568..343 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:34:50 has no hits.
BO14970.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:39 Download gff for
BO14970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17137-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:05 Download gff for
BO14970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17137-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:35:03 Download gff for
BO14970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..980 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:46 Download gff for
BO14970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..980 | 17..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:46 Download gff for
BO14970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10846573..10846898 | 17..342 | 100 | | Minus |
| 2L | 10845936..10846218 | 568..850 | 99 | <- | Minus |
| 2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:35:03 Download gff for
BO14970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10845936..10846218 | 568..850 | 99 | <- | Minus |
| arm_2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
| arm_2L | 10846573..10846898 | 17..342 | 100 | | Minus |
BO14970.complete Sequence
913 bp assembled on 2007-10-17
GenBank Submission: FJ633307
> BO14970.complete
GAAGTTATCAGTCGACATGGCCGCCAAAACACCGACATACCCAGATCTGG
GCAAGCTGGCCCGCGATCTCTTCAAGCGCGGCTACCATCCGGGCATCTGG
CAGATCGACTGCAAGACCCTGACCAATTCGGGGATTGAGTTCTTCACCAC
CGGCTTCGCCAGCCAGGACAACAGCAAGGTGACCGGCTCGCTTCAGAGCA
AGTACAAGATCGAGGACCAAGGCCTGACCCTAACCGAGCGATGGAACACG
GAGAACTGGCTCTTCGGTGAGATTATGCACCGGGATAAGTTGGCACAGGG
CCTGATGTTGGCCGTCGAGGCCAAGTTTCAGCCGGGATCAAATGAGGCGG
ATGGCAAGTTCAAGATGGGCTATGCCCAGGACAACTTTAACTTCCTGGCC
GACATTGGACTGAACTCGGAGCCGATACTCAACTGTTCGCTGGTTGTGGG
CCACAAGGAGTTCCTCGGCGGCGTGGGCACCGAATTTGACGTTGGCAACA
CCGAACTCAAGGGCTGGAAGGTGGCCCTTGGTTGGACAAATGAAACTGCC
ACCCTCCATGGCGAGCTGAAGAACGGCGACACCTGGTTGGCCTCGCTGTT
CTACAAGGCGAGCGAGAAGATCGATGCCGGTATCGAGGTAACCAAGGGAG
CCGGCGGCGGCGAAGCTGCCGAGGGTGAACAGCAGGGCGGAGATGTGGTC
GTCAATCTGGGCATGATCTACCACTTGGAGGAGGATGCCCTCGTACGCGC
CAAGGTCAACAACCTGGTGGAGCTGGGCCTGGGCTATGAACAGAAACTGC
GCGACGGCATCACCGCCTCCATATCCGCCGTGCTGGATTGCAACAACTTT
AAGGACGGAAACCATCGGTTCGGCGTGGGAATTGCCCTCCAGTGCGCAAG
CTTTCTAGACCAT
BO14970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 882 | CG17137-PB | 1..879 | 17..895 | 4395 | 100 | Plus |
| Porin2-RA | 882 | CG17137-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 88..966 | 17..895 | 4395 | 100 | Plus |
| Porin2-RA | 1128 | CG17137-RA | 147..1025 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10845891..10846218 | 895..568 | 1640 | 100 | Minus |
| 2L | 23513712 | 2L | 10846573..10846898 | 342..17 | 1630 | 100 | Minus |
| 2L | 23513712 | 2L | 10846281..10846506 | 568..343 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:49:16 has no hits.
BO14970.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:36 Download gff for
BO14970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 1..882 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:57 Download gff for
BO14970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1028 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:42 Download gff for
BO14970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1025 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:27 Download gff for
BO14970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1025 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:57 Download gff for
BO14970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1025 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:57 Download gff for
BO14970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10845889..10846218 | 568..897 | 99 | <- | Minus |
| 2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
| 2L | 10846573..10846898 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:42 Download gff for
BO14970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10845889..10846218 | 568..897 | 99 | <- | Minus |
| arm_2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
| arm_2L | 10846573..10846898 | 17..342 | 100 | | Minus |
BO14970.pep Sequence
Translation from 16 to 913
> BO14970.pep
MAAKTPTYPDLGKLARDLFKRGYHPGIWQIDCKTLTNSGIEFFTTGFASQ
DNSKVTGSLQSKYKIEDQGLTLTERWNTENWLFGEIMHRDKLAQGLMLAV
EAKFQPGSNEADGKFKMGYAQDNFNFLADIGLNSEPILNCSLVVGHKEFL
GGVGTEFDVGNTELKGWKVALGWTNETATLHGELKNGDTWLASLFYKASE
KIDAGIEVTKGAGGGEAAEGEQQGGDVVVNLGMIYHLEEDALVRAKVNNL
VELGLGYEQKLRDGITASISAVLDCNNFKDGNHRFGVGIALQCASFLDH
BO14970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-PB | 293 | CG17137-PB | 1..293 | 1..293 | 1550 | 100 | Plus |
| Porin2-PA | 293 | CG17137-PA | 1..293 | 1..293 | 1550 | 100 | Plus |
| porin-PE | 282 | CG6647-PE | 4..281 | 6..292 | 643 | 42.4 | Plus |
| porin-PD | 282 | CG6647-PD | 4..281 | 6..292 | 643 | 42.4 | Plus |
| porin-PC | 282 | CG6647-PC | 4..281 | 6..292 | 643 | 42.4 | Plus |
