Clone Sequence Records
BO14971.3prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-29
> BO14971.3prime
ATGGTCTAGAAAGCTTGCCAATTTGATTGAGAAGGAGGAGCCGCAGGAGC
AGCCCTGTTCCGCCAGCGGATTGGCCACCATCCGGAAACCGGCGCGTATT
AGTTCGCTATGGTAGTCCACGGTGGCGCCGCTGCAGTACTCCAGCGAGAC
TGTATCGATCACCACCTTGGCCTCAGCCTCGCCAAACTGTCGGTCATCCT
CGTTCAGCTGCTTATCCAAATCGAATTTGTACTGAAAGCCGGAGCATCCG
CCTCCTTCGACGGTCACACGCAGGAAAGATCCATCCACGCAGATCTCACG
GAGCCGTTTCAAGCAGCTCTCGCTCACCTGGACACTAAGTTCGGGATTCG
CGGATGTGGAAGCGGTTGCATGCCGCATTAGGATTAGATTTCTTTGCAAT
CCGCTCCTGGCCACTTGTCGCAGTAGGAACGCCATGTCGACTGATAACT
BO14971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-PA | 420 | CG13623-RA | 1..417 | 435..19 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-RB | 563 | CG13623-RB | 96..512 | 435..19 | 2085 | 100 | Minus |
| CG13623-RA | 725 | CG13623-RA | 258..674 | 435..19 | 2085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24529824..24530198 | 19..393 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 24530258..24530301 | 392..435 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:06:00 has no hits.
BO14971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:40 Download gff for
BO14971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-PA | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:07 Download gff for
BO14971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-PA | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:16 Download gff for
BO14971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 10..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:14 Download gff for
BO14971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 10..435 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:14 Download gff for
BO14971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24529816..24530196 | 10..391 | 99 | <- | Plus |
| 3R | 24530258..24530301 | 392..435 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:16 Download gff for
BO14971.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20355538..20355918 | 10..391 | 99 | <- | Plus |
| arm_3R | 20355980..20356023 | 392..435 | 100 | | Plus |
BO14971.5prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-29
> BO14971.5prime
GAAGTTATCAGTCGACATGGCGTTCCTACTGCGACAAGTGGCCAGGAGCG
GATTGCAAAGAAATCTAATCCTAATGCGGCATGCAACCGCTTCCACATCC
GCGAATCCCGAACTTAGTGTCCAGGTGAGCGAGAGCTGCTTGAAACGGCT
CCGTGAGATCTGCGTGGATGGATCTTTCCTGCGTGTGACCGTCGAAGGAG
GCGGATGCTCCGGCTTTCAGTACAAATTCGATTTGGATAAGCAGCTGAAC
GAGGATGACCGACAGTTTGGCGAGGCTGAGGCCAAGGTGGTGATCGATAC
AGTCTCGCTGGAGTACTGCAGCGGCGCCACCGTGGACTACCATAGCGAAC
TAATACGCGCCGGTTTCCGGATGGTGGCCAATCCGCTGGCGGAACAGGGC
TGCTCCTGCGGCTCCTCCTTCTCAATCAAATTGGCAAGCTTTCTAGACC
BO14971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-PA | 420 | CG13623-RA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-RB | 563 | CG13623-RB | 96..512 | 17..433 | 2085 | 100 | Plus |
| CG13623-RA | 725 | CG13623-RA | 258..674 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24529824..24530198 | 433..59 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 24530258..24530301 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:26:17 has no hits.
BO14971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:41 Download gff for
BO14971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-PA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:08 Download gff for
BO14971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-PA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:30:31 Download gff for
BO14971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:40 Download gff for
BO14971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 17..442 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:40 Download gff for
BO14971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24529816..24530196 | 61..442 | 99 | <- | Minus |
| 3R | 24530258..24530301 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:30:31 Download gff for
BO14971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20355538..20355918 | 61..442 | 99 | <- | Minus |
| arm_3R | 20355980..20356023 | 17..60 | 100 | | Minus |
BO14971.complete Sequence
451 bp (451 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633308
> BO14971.complete
GAAGTTATCAGTCGACATGGCGTTCCTACTGCGACAAGTGGCCAGGAGCG
GATTGCAAAGAAATCTAATCCTAATGCGGCATGCAACCGCTTCCACATCC
GCGAATCCCGAACTTAGTGTCCAGGTGAGCGAGAGCTGCTTGAAACGGCT
CCGTGAGATCTGCGTGGATGGATCTTTCCTGCGTGTGACCGTCGAAGGAG
GCGGATGCTCCGGCTTTCAGTACAAATTCGATTTGGATAAGCAGCTGAAC
GAGGATGACCGACAGTTTGGCGAGGCTGAGGCCAAGGTGGTGATCGATAC
AGTCTCGCTGGAGTACTGCAGCGGCGCCACCGTGGACTACCATAGCGAAC
TAATACGCGCCGGTTTCCGGATGGTGGCCAATCCGCTGGCGGAACAGGGC
TGCTCCTGCGGCTCCTCCTTCTCAATCAAATTGGCAAGCTTTCTAGACCA
T
BO14971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-RB | 420 | CG13623-PB | 1..417 | 17..433 | 2085 | 100 | Plus |
| CG13623-RA | 420 | CG13623-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-RB | 563 | CG13623-RB | 96..512 | 17..433 | 2085 | 100 | Plus |
| CG13623-RA | 725 | CG13623-RA | 258..674 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24529824..24530198 | 433..59 | 1875 | 100 | Minus |
| 3R | 32079331 | 3R | 24530258..24530301 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:18 has no hits.
BO14971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:57 Download gff for
BO14971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:57 Download gff for
BO14971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:42 Download gff for
BO14971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..674 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:57 Download gff for
BO14971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..682 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:14 Download gff for
BO14971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13623-RA | 258..674 | 17..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:14 Download gff for
BO14971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24529822..24530196 | 61..435 | 99 | <- | Minus |
| 3R | 24530258..24530301 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:42 Download gff for
BO14971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20355544..20355918 | 61..435 | 99 | <- | Minus |
| arm_3R | 20355980..20356023 | 17..60 | 100 | | Minus |
BO14971.pep Sequence
Translation from 16 to 451
> BO14971.pep
MAFLLRQVARSGLQRNLILMRHATASTSANPELSVQVSESCLKRLREICV
DGSFLRVTVEGGGCSGFQYKFDLDKQLNEDDRQFGEAEAKVVIDTVSLEY
CSGATVDYHSELIRAGFRMVANPLAEQGCSCGSSFSIKLASFLDH
BO14971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13623-PB | 139 | CG13623-PB | 1..139 | 1..139 | 707 | 100 | Plus |
| CG13623-PA | 139 | CG13623-PA | 1..139 | 1..139 | 707 | 100 | Plus |
