Clone Sequence Records
BO14976.3prime Sequence
665 bp (664 high quality bases) assembled on 2006-05-29
> BO14976.3prime
ATGGTCTAGAAAGCTTGCATTCGAAACAGCGTAATAGTCAGAGGCGCTCA
CTTTATGAGGACCTCCATAGAAGTCCAGAACAAAGATATTGCTAATTTCC
AGTTCGCAAAGGTAGAAATTGTGAGCTTTTACCCAATTGATGGCAGCTGG
ATGACGCCTCACATAGGCATCCAGCGATGGCTGATAGCTTTTGTCGCTAG
GATCCATCTTCTTCACCTGTCCACTGATCATGGAACGGGCACATGTAGGC
TCCATGGGATCCTTTCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCACT
GAACAGGAGTGTGACCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAGT
CCAAATCGGTTAGCAGGAATCGAATACGTCCAGTGGACCTGTTATTAGCA
TCGCTGTCGTCGATGGAGATAATGTTGACCATGGGATACCCCTTCACCCG
TTCGTTGGTGGAGAGACTTCCCACAGCCGCCCAATTGGCGCGATGGACCA
AATCTCTGGCGATCTTGGCGTGATTTAACTCTTGCTCTCGCTTATATTCT
CTAATTATACGCTCATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCAG
GCTCACGAGGGCCAAAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTCA
TGTCGACTGATAACT
BO14976.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PA | 636 | CREG-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
CG5413-PB | 636 | CREG-RB | 1..633 | 651..19 | 3165 | 100 | Minus |
CG5413-PC | 522 | CREG-RC | 1..444 | 651..208 | 2220 | 100 | Minus |
CG5413-PC | 522 | CREG-RC | 442..522 | 128..48 | 405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 962 | CG5413-RD | 107..740 | 652..19 | 3170 | 100 | Minus |
CREG-RB | 967 | CG5413-RB | 112..745 | 652..19 | 3170 | 100 | Minus |
CREG-RA | 899 | CG5413-RA | 50..683 | 652..19 | 3170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 208..652 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 17393494..17393602 | 19..127 | 545 | 100 | Plus |
3R | 32079331 | 3R | 17393673..17393758 | 126..211 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:00 has no hits.
BO14976.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:47 Download gff for
BO14976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-PB | 1..636 | 16..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:15 Download gff for
BO14976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PB | 1..636 | 16..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:24 Download gff for
BO14976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..683 | 19..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:49 Download gff for
BO14976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..683 | 19..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:49 Download gff for
BO14976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393494..17393600 | 19..125 | 100 | <- | Plus |
3R | 17393673..17393754 | 126..207 | 100 | <- | Plus |
3R | 17393816..17394272 | 208..663 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:24 Download gff for
BO14976.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219216..13219322 | 19..125 | 100 | <- | Plus |
arm_3R | 13219395..13219476 | 126..207 | 100 | <- | Plus |
arm_3R | 13219538..13219994 | 208..663 | 98 | | Plus |
BO14976.5prime Sequence
665 bp (664 high quality bases) assembled on 2006-05-29
> BO14976.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATG
CAAGCTTTCTAGACC
BO14976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PA | 636 | CREG-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
CG5413-PB | 636 | CREG-RB | 1..633 | 17..649 | 3165 | 100 | Plus |
CG5413-PC | 522 | CREG-RC | 1..444 | 17..460 | 2220 | 100 | Plus |
CG5413-PC | 522 | CREG-RC | 442..522 | 540..620 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 962 | CG5413-RD | 107..740 | 16..649 | 3170 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..745 | 16..649 | 3170 | 100 | Plus |
CREG-RA | 899 | CG5413-RA | 50..683 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393494..17393602 | 649..541 | 545 | 100 | Minus |
3R | 32079331 | 3R | 17393673..17393758 | 542..457 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:23:35 has no hits.
BO14976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:48 Download gff for
BO14976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-PB | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:16 Download gff for
BO14976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PB | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:17 Download gff for
BO14976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..683 | 5..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:19:04 Download gff for
BO14976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..683 | 5..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:19:04 Download gff for
BO14976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393494..17393600 | 543..649 | 100 | <- | Minus |
3R | 17393673..17393754 | 461..542 | 100 | <- | Minus |
3R | 17393816..17394272 | 5..460 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:17 Download gff for
BO14976.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219216..13219322 | 543..649 | 100 | <- | Minus |
arm_3R | 13219395..13219476 | 461..542 | 100 | <- | Minus |
arm_3R | 13219538..13219994 | 5..460 | 98 | | Minus |
BO14976.complete Sequence
667 bp assembled on 2007-10-17
GenBank Submission: FJ633309
> BO14976.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATG
CAAGCTTTCTAGACCAT
BO14976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 636 | CG5413-PD | 1..633 | 17..649 | 3165 | 100 | Plus |
CREG-RB | 636 | CG5413-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
CREG-RA | 636 | CG5413-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 962 | CG5413-RD | 107..740 | 16..649 | 3170 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..745 | 16..649 | 3170 | 100 | Plus |
CREG-RA | 899 | CG5413-RA | 50..683 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393494..17393602 | 649..541 | 545 | 100 | Minus |
3R | 32079331 | 3R | 17393673..17393758 | 542..457 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:42 has no hits.
BO14976.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:37 Download gff for
BO14976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RB | 1..636 | 17..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:59 Download gff for
BO14976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RB | 46..688 | 9..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:34 Download gff for
BO14976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 51..683 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:52 Download gff for
BO14976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RB | 56..688 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:37 Download gff for
BO14976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 51..683 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:37 Download gff for
BO14976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393491..17393600 | 543..651 | 98 | <- | Minus |
3R | 17393673..17393754 | 461..542 | 100 | <- | Minus |
3R | 17393816..17394259 | 17..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:34 Download gff for
BO14976.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219213..13219322 | 543..651 | 98 | <- | Minus |
arm_3R | 13219395..13219476 | 461..542 | 100 | <- | Minus |
arm_3R | 13219538..13219981 | 17..460 | 100 | | Minus |
BO14976.pep Sequence
Translation from 16 to 667
> BO14976.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKMD
PSDKSYQPSLDAYVRRHPAAINWVKAHNFYLCELEISNIFVLDFYGGPHK
VSASDYYAVSNASFLDH
BO14976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-PD | 211 | CG5413-PD | 1..211 | 1..211 | 1107 | 100 | Plus |
CREG-PB | 211 | CG5413-PB | 1..211 | 1..211 | 1107 | 100 | Plus |
CREG-PA | 211 | CG5413-PA | 1..211 | 1..211 | 1107 | 100 | Plus |
CREG-PC | 173 | CG5413-PC | 1..149 | 1..149 | 766 | 99.3 | Plus |