Clone BO14976 Report

Search the DGRC for BO14976

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCREG-RA
Protein status:BO14976.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO14976.3prime Sequence

665 bp (664 high quality bases) assembled on 2006-05-29

> BO14976.3prime
ATGGTCTAGAAAGCTTGCATTCGAAACAGCGTAATAGTCAGAGGCGCTCA
CTTTATGAGGACCTCCATAGAAGTCCAGAACAAAGATATTGCTAATTTCC
AGTTCGCAAAGGTAGAAATTGTGAGCTTTTACCCAATTGATGGCAGCTGG
ATGACGCCTCACATAGGCATCCAGCGATGGCTGATAGCTTTTGTCGCTAG
GATCCATCTTCTTCACCTGTCCACTGATCATGGAACGGGCACATGTAGGC
TCCATGGGATCCTTTCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCACT
GAACAGGAGTGTGACCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAGT
CCAAATCGGTTAGCAGGAATCGAATACGTCCAGTGGACCTGTTATTAGCA
TCGCTGTCGTCGATGGAGATAATGTTGACCATGGGATACCCCTTCACCCG
TTCGTTGGTGGAGAGACTTCCCACAGCCGCCCAATTGGCGCGATGGACCA
AATCTCTGGCGATCTTGGCGTGATTTAACTCTTGCTCTCGCTTATATTCT
CTAATTATACGCTCATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCAG
GCTCACGAGGGCCAAAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTCA
TGTCGACTGATAACT

BO14976.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PA 636 CREG-RA 1..633 651..19 3165 100 Minus
CG5413-PB 636 CREG-RB 1..633 651..19 3165 100 Minus
CG5413-PC 522 CREG-RC 1..444 651..208 2220 100 Minus
CG5413-PC 522 CREG-RC 442..522 128..48 405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 962 CG5413-RD 107..740 652..19 3170 100 Minus
CREG-RB 967 CG5413-RB 112..745 652..19 3170 100 Minus
CREG-RA 899 CG5413-RA 50..683 652..19 3170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 208..652 2225 100 Plus
3R 32079331 3R 17393494..17393602 19..127 545 100 Plus
3R 32079331 3R 17393673..17393758 126..211 430 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:49:00 has no hits.

BO14976.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:47 Download gff for BO14976.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-PB 1..636 16..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:15 Download gff for BO14976.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PB 1..636 16..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:24 Download gff for BO14976.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..683 19..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:49 Download gff for BO14976.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..683 19..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:49 Download gff for BO14976.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393494..17393600 19..125 100 <- Plus
3R 17393673..17393754 126..207 100 <- Plus
3R 17393816..17394272 208..663 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:24 Download gff for BO14976.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219216..13219322 19..125 100 <- Plus
arm_3R 13219395..13219476 126..207 100 <- Plus
arm_3R 13219538..13219994 208..663 98   Plus

BO14976.5prime Sequence

665 bp (664 high quality bases) assembled on 2006-05-29

> BO14976.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATG
CAAGCTTTCTAGACC

BO14976.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PA 636 CREG-RA 1..633 17..649 3165 100 Plus
CG5413-PB 636 CREG-RB 1..633 17..649 3165 100 Plus
CG5413-PC 522 CREG-RC 1..444 17..460 2220 100 Plus
CG5413-PC 522 CREG-RC 442..522 540..620 405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 962 CG5413-RD 107..740 16..649 3170 100 Plus
CREG-RB 967 CG5413-RB 112..745 16..649 3170 100 Plus
CREG-RA 899 CG5413-RA 50..683 16..649 3170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393494..17393602 649..541 545 100 Minus
3R 32079331 3R 17393673..17393758 542..457 430 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:23:35 has no hits.

BO14976.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:48 Download gff for BO14976.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-PB 1..636 17..652 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:16 Download gff for BO14976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PB 1..636 17..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:17 Download gff for BO14976.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..683 5..649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:19:04 Download gff for BO14976.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..683 5..649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:19:04 Download gff for BO14976.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393494..17393600 543..649 100 <- Minus
3R 17393673..17393754 461..542 100 <- Minus
3R 17393816..17394272 5..460 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:17 Download gff for BO14976.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219216..13219322 543..649 100 <- Minus
arm_3R 13219395..13219476 461..542 100 <- Minus
arm_3R 13219538..13219994 5..460 98   Minus

BO14976.complete Sequence

667 bp assembled on 2007-10-17

GenBank Submission: FJ633309

> BO14976.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATG
CAAGCTTTCTAGACCAT

BO14976.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 636 CG5413-PD 1..633 17..649 3165 100 Plus
CREG-RB 636 CG5413-PB 1..633 17..649 3165 100 Plus
CREG-RA 636 CG5413-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 962 CG5413-RD 107..740 16..649 3170 100 Plus
CREG-RB 967 CG5413-RB 112..745 16..649 3170 100 Plus
CREG-RA 899 CG5413-RA 50..683 16..649 3170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393494..17393602 649..541 545 100 Minus
3R 32079331 3R 17393673..17393758 542..457 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:52:42 has no hits.

BO14976.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:37 Download gff for BO14976.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RB 1..636 17..652 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:59 Download gff for BO14976.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RB 46..688 9..649 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:34 Download gff for BO14976.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 51..683 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:52 Download gff for BO14976.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RB 56..688 17..651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:37 Download gff for BO14976.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 51..683 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:37 Download gff for BO14976.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17393491..17393600 543..651 98 <- Minus
3R 17393673..17393754 461..542 100 <- Minus
3R 17393816..17394259 17..460 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:34 Download gff for BO14976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219213..13219322 543..651 98 <- Minus
arm_3R 13219395..13219476 461..542 100 <- Minus
arm_3R 13219538..13219981 17..460 100   Minus

BO14976.pep Sequence

Translation from 16 to 667

> BO14976.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKMD
PSDKSYQPSLDAYVRRHPAAINWVKAHNFYLCELEISNIFVLDFYGGPHK
VSASDYYAVSNASFLDH

BO14976.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-PD 211 CG5413-PD 1..211 1..211 1107 100 Plus
CREG-PB 211 CG5413-PB 1..211 1..211 1107 100 Plus
CREG-PA 211 CG5413-PA 1..211 1..211 1107 100 Plus
CREG-PC 173 CG5413-PC 1..149 1..149 766 99.3 Plus