Clone Sequence Records
BO14977.3prime Sequence
638 bp (637 high quality bases) assembled on 2006-05-29
> BO14977.3prime
ATGGTCTAGAAAGCTTGCGCTCAGCATCGATTTGCTAAAGATTTGGTAGT
CGGCTTGTTCCAGGACATCTGGCGAGATCTCGTCCTTCACGTAGCCCAGT
TGCTTGAAGAAGGAAATGGAGGCTTCGTTGTTGTTGAGAACGGTCAGCAT
GACCTTTTCCAGATGCCACAGGCGAGCGCAGTCCTCCAAAGTGCTCATGA
TGAACTTTCCCAGGCCTTTTCTACGATACTCTGCAGCCACTTGCATTTCG
TAACAATACAGGACACAGTCCCCGTGATCCATGTCGAAGCGGAACATTGC
GTAGGCCACGTTCTCCTTCTTTTCGTTCTGGGCCACCAAGTAGCGAGCCC
AGTTCTTGTTCAGCTCGGCGGCTTTGATCTTGGGCTGCCAGCCCATCTTG
AGTTGCTTGTAATAGGGTCCCACGTTCGTCTCGGCCAGCTTAAAGGCCCA
TTTCAGCAGTTTGGAGTCCGCATCCGACTTCGCTCGGCAGATGAGTTTGA
ATTCCTCTCCGCTGGGGGCTTTGTAGCTTTGGTAGCTCAGAGATTCGAGG
GGATTCTTGGCCCTGGCAGCCGTCTCCACAAATCTCTGTTTGGCGCCCTG
ACTTAGATCGTCCTGATTCCGCATGTCGACTGATAACT
BO14977.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-PA | 609 | CG7593-RA | 1..602 | 624..23 | 2985 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 736 | CG7593-RA | 85..690 | 624..19 | 3000 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29724496..29724866 | 254..624 | 1855 | 100 | Plus |
| 3R | 32079331 | 3R | 29724205..29724440 | 19..254 | 1150 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:45:21 has no hits.
BO14977.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:49 Download gff for
BO14977.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-PA | 1..609 | 16..624 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:18 Download gff for
BO14977.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-PA | 1..609 | 16..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:30 Download gff for
BO14977.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..690 | 19..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:13 Download gff for
BO14977.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..690 | 19..632 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:13 Download gff for
BO14977.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29724205..29724439 | 19..253 | 99 | <- | Plus |
| 3R | 29724496..29724872 | 254..630 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:30 Download gff for
BO14977.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25549927..25550161 | 19..253 | 99 | <- | Plus |
| arm_3R | 25550218..25550594 | 254..630 | 98 | <- | Plus |
BO14977.5prime Sequence
638 bp (637 high quality bases) assembled on 2006-05-29
> BO14977.5prime
GAAGTTATCAGTCGACATGCGGAATCAGGACGATCTAAGTCAGGGCGCCA
AACAGAGATTTGTGGAGACGGCTGCCAGGGCCAAGAATCCCCTCGAATCT
CTGAGCTACCAAAGCTACAAAGCCCCCAGCGGAGAGGAATTCAAACTCAT
CTGCCGAGCGAAGTCGGATGCGGACTCCAAACTGCTGAAATGGGCCTTTA
AGCTGGCCGAGACGAACGTGGGACCCTATTACAAGCAACTCAAGATGGGC
TGGCAGCCCAAGATCAAAGCCGCCGAGCTGAACAAGAACTGGGCTCGCTA
CTTGGTGGCCCAGAACGAAAAGAAGGAGAACGTGGCCTACGCAATGTTCC
GCTTCGACATGGATCACGGGGACTGTGTCCTGTATTGTTACGAAATGCAA
GTGGCTGCAGAGTATCGTAGAAAAGGCCTGGGAAAGTTCATCATGAGCAC
TTTGGAGGACTGCGCTCGCCTGTGGCATCTGGAAAAGGTCATGCTGACCG
TTCTCAACAACAACGAAGCCTCCATTTCCTTCTTCAAGCAACTGGGCTAC
GTGAAGGACGAGATCTCGCCAGATGTCCTGGAACAAGCCGACTACCAAAT
CTTTAGCAAATCGATGCTGAGCGCAAGCTTTCTAGACC
BO14977.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-PA | 609 | CG7593-RA | 1..602 | 17..618 | 2985 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 736 | CG7593-RA | 85..690 | 17..622 | 3000 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29724496..29724866 | 387..17 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 29724205..29724440 | 622..387 | 1150 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:58:39 has no hits.
BO14977.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:50 Download gff for
BO14977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-PA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:19 Download gff for
BO14977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-PA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:35 Download gff for
BO14977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..690 | 9..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:41 Download gff for
BO14977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..690 | 9..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:41 Download gff for
BO14977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29724205..29724439 | 388..622 | 99 | <- | Minus |
| 3R | 29724496..29724872 | 11..387 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:35 Download gff for
BO14977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25549927..25550161 | 388..622 | 99 | <- | Minus |
| arm_3R | 25550218..25550594 | 11..387 | 98 | <- | Minus |
BO14977.complete Sequence
640 bp assembled on 2007-10-17
GenBank Submission: FJ633310
> BO14977.complete
GAAGTTATCAGTCGACATGCGGAATCAGGACGATCTAAGTCAGGGCGCCA
AACAGAGATTTGTGGAGACGGCTGCCAGGGCCAAGAATCCCCTCGAATCT
CTGAGCTACCAAAGCTACAAAGCCCCCAGCGGAGAGGAATTCAAACTCAT
CTGCCGAGCGAAGTCGGATGCGGACTCCAAACTGCTGAAATGGGCCTTTA
AGCTGGCCGAGACGAACGTGGGACCCTATTACAAGCAACTCAAGATGGGC
TGGCAGCCCAAGATCAAAGCCGCCGAGCTGAACAAGAACTGGGCTCGCTA
CTTGGTGGCCCAGAACGAAAAGAAGGAGAACGTGGCCTACGCAATGTTCC
GCTTCGACATGGATCACGGGGACTGTGTCCTGTATTGTTACGAAATGCAA
GTGGCTGCAGAGTATCGTAGAAAAGGCCTGGGAAAGTTCATCATGAGCAC
TTTGGAGGACTGCGCTCGCCTGTGGCATCTGGAAAAGGTCATGCTGACCG
TTCTCAACAACAACGAAGCCTCCATTTCCTTCTTCAAGCAACTGGGCTAC
GTGAAGGACGAGATCTCGCCAGATGTCCTGGAACAAGCCGACTACCAAAT
CTTTAGCAAATCGATGCTGAGCGCAAGCTTTCTAGACCAT
BO14977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 609 | CG7593-PA | 1..606 | 17..622 | 3000 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 736 | CG7593-RA | 85..690 | 17..622 | 3000 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29724496..29724866 | 387..17 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 29724205..29724440 | 622..387 | 1150 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:04 has no hits.
BO14977.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:38 Download gff for
BO14977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:01 Download gff for
BO14977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 49..660 | 9..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:49 Download gff for
BO14977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 85..690 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:24 Download gff for
BO14977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 55..660 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:55 Download gff for
BO14977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 85..690 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:55 Download gff for
BO14977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29724496..29724866 | 17..387 | 100 | | Minus |
| 3R | 29724202..29724439 | 388..624 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:49 Download gff for
BO14977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25549924..25550161 | 388..624 | 98 | <- | Minus |
| arm_3R | 25550218..25550588 | 17..387 | 100 | | Minus |
BO14977.pep Sequence
Translation from 16 to 640
> BO14977.pep
MRNQDDLSQGAKQRFVETAARAKNPLESLSYQSYKAPSGEEFKLICRAKS
DADSKLLKWAFKLAETNVGPYYKQLKMGWQPKIKAAELNKNWARYLVAQN
EKKENVAYAMFRFDMDHGDCVLYCYEMQVAAEYRRKGLGKFIMSTLEDCA
RLWHLEKVMLTVLNNNEASISFFKQLGYVKDEISPDVLEQADYQIFSKSM
LSASFLDH
BO14977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-PA | 202 | CG7593-PA | 1..202 | 1..202 | 1056 | 100 | Plus |
