Clone Sequence Records
BO14978.3prime Sequence
593 bp (592 high quality bases) assembled on 2006-05-29
> BO14978.3prime
ATGGTCTAGAAAGCTTGCATGATTGAGCTTTCTGAGAGCATCGAAATACG
AGCCGATCATGAGGTCCGCCTCCTGGATACCCAGTTCCCTGGACAGTTTC
TCGGCGATGGCTTGACCCTCCTCGAGGGTTTGATCCTCTGTCAGGCACAC
CTCCAGTTCCATGAAGTATCCCAGATCCTTTACCTCGTCCAGGTGGATGC
GCGTCTGTCCGCAAAGGAACAAGTGCCGTCGCTTGGCCAGGACACCAAGT
ACGCCGTTCGACTGGCTCAGGATCTTCTCCAGCACCTCCGGTTCGTCCAC
CTCCGTCTTGTTGAACTTGGAAAGCTTGGGACCGGCCACATCGGGACGAT
CGTAGTAGACCAATTGGGAGCGCGATGGCGTCTGTAAGTAGCGCAATTTA
AGCCGTCCACCCAGCGGAGATTCAAAGAAGACGTCCCTCTGCTCGATTAA
CTGCGCATCCTGGCTGCCGCTTAGGTTTCTGGCCAGGATTAGGCGCTGCT
CAAAGCCCTCAGATCCACCCGGAATCCGTGCCTTCACCTCCACATTGCGC
TGATCCGCCGGAGTAACCGATTCGCACATGTCGACTGATAACT
BO14978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-PA | 564 | CG14434-RA | 1..561 | 579..19 | 2730 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 1507 | CG14434-RC | 805..1367 | 581..19 | 2770 | 99.5 | Minus |
CG14434-RB | 987 | CG14434-RB | 285..847 | 581..19 | 2770 | 99.5 | Minus |
CG14434-RA | 730 | CG14434-RA | 28..590 | 581..19 | 2770 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6852049..6852611 | 19..581 | 2770 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:09:41 has no hits.
BO14978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:51 Download gff for
BO14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-PA | 1..564 | 15..579 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:21 Download gff for
BO14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-PA | 1..564 | 15..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:46 Download gff for
BO14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 9..581 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:44 Download gff for
BO14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 9..581 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:44 Download gff for
BO14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6852040..6852611 | 9..581 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:46 Download gff for
BO14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6746073..6746644 | 9..581 | 98 | | Plus |
BO14978.5prime Sequence
593 bp (592 high quality bases) assembled on 2006-05-29
> BO14978.5prime
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATGCAAGCTTTCTAGACC
BO14978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-PA | 564 | CG14434-RA | 1..561 | 17..577 | 2730 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 1507 | CG14434-RC | 805..1367 | 15..577 | 2770 | 99.5 | Plus |
CG14434-RB | 987 | CG14434-RB | 285..847 | 15..577 | 2770 | 99.5 | Plus |
CG14434-RA | 730 | CG14434-RA | 28..590 | 15..577 | 2770 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6852049..6852611 | 577..15 | 2770 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:18:54 has no hits.
BO14978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:52 Download gff for
BO14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-PA | 1..564 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:22 Download gff for
BO14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-PA | 1..564 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:52:06 Download gff for
BO14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 15..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:43:57 Download gff for
BO14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 15..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:43:57 Download gff for
BO14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6852040..6852611 | 15..587 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:52:06 Download gff for
BO14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6746073..6746644 | 15..587 | 98 | | Minus |
BO14978.complete Sequence
595 bp assembled on 2007-10-17
GenBank Submission: FJ633311
> BO14978.complete
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATGCAAGCTTTCTAGACCAT
BO14978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 645 | CG14434-PC | 80..642 | 15..577 | 2770 | 99.5 | Plus |
CG14434-RB | 564 | CG14434-PB | 1..561 | 17..577 | 2760 | 99.5 | Plus |
CG14434-RA | 564 | CG14434-PA | 1..561 | 17..577 | 2760 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 1507 | CG14434-RC | 805..1367 | 15..577 | 2770 | 99.5 | Plus |
CG14434-RB | 987 | CG14434-RB | 285..847 | 15..577 | 2770 | 99.5 | Plus |
CG14434-RA | 730 | CG14434-RA | 28..590 | 15..577 | 2770 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6852049..6852611 | 577..15 | 2770 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:12:19 has no hits.
BO14978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:39 Download gff for
BO14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 1..564 | 17..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:02 Download gff for
BO14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 15..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:43 Download gff for
BO14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 30..590 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:00 Download gff for
BO14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 15..575 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:06 Download gff for
BO14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 30..590 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:06 Download gff for
BO14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6852047..6852609 | 17..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:43 Download gff for
BO14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6746080..6746642 | 17..579 | 99 | | Minus |
BO14978.pep Sequence
Translation from 16 to 595
> BO14978.pep
MCESVTPADQRNVEVKARIPGGSEGFEQRLILARNLSGSQDAQLIEQRDV
FFESPLGGRLKLRYLQTPSRSQLVYYDRPDVAGPKLSKFNKTEVDEPEVL
EKILSQSNGVLGVLAKRRHLFLCGQTRIHLDEVKDLGYFMELEVCLTEDQ
TLEEGQAIAEKLSRELGIQEADLMIGSYFDALRKLNHASFLDH
BO14978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-PB | 187 | CG14434-PB | 1..187 | 1..187 | 949 | 100 | Plus |
CG14434-PA | 187 | CG14434-PA | 1..187 | 1..187 | 949 | 100 | Plus |
CG14434-PC | 214 | CG14434-PC | 28..214 | 1..187 | 949 | 100 | Plus |