Clone BO14978 Report

Search the DGRC for BO14978

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG14434-RA
Protein status:BO14978.pep: validated full length
Sequenced Size:595

Clone Sequence Records

BO14978.3prime Sequence

593 bp (592 high quality bases) assembled on 2006-05-29

> BO14978.3prime
ATGGTCTAGAAAGCTTGCATGATTGAGCTTTCTGAGAGCATCGAAATACG
AGCCGATCATGAGGTCCGCCTCCTGGATACCCAGTTCCCTGGACAGTTTC
TCGGCGATGGCTTGACCCTCCTCGAGGGTTTGATCCTCTGTCAGGCACAC
CTCCAGTTCCATGAAGTATCCCAGATCCTTTACCTCGTCCAGGTGGATGC
GCGTCTGTCCGCAAAGGAACAAGTGCCGTCGCTTGGCCAGGACACCAAGT
ACGCCGTTCGACTGGCTCAGGATCTTCTCCAGCACCTCCGGTTCGTCCAC
CTCCGTCTTGTTGAACTTGGAAAGCTTGGGACCGGCCACATCGGGACGAT
CGTAGTAGACCAATTGGGAGCGCGATGGCGTCTGTAAGTAGCGCAATTTA
AGCCGTCCACCCAGCGGAGATTCAAAGAAGACGTCCCTCTGCTCGATTAA
CTGCGCATCCTGGCTGCCGCTTAGGTTTCTGGCCAGGATTAGGCGCTGCT
CAAAGCCCTCAGATCCACCCGGAATCCGTGCCTTCACCTCCACATTGCGC
TGATCCGCCGGAGTAACCGATTCGCACATGTCGACTGATAACT

BO14978.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PA 564 CG14434-RA 1..561 579..19 2730 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 1507 CG14434-RC 805..1367 581..19 2770 99.5 Minus
CG14434-RB 987 CG14434-RB 285..847 581..19 2770 99.5 Minus
CG14434-RA 730 CG14434-RA 28..590 581..19 2770 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6852049..6852611 19..581 2770 99.5 Plus
Blast to na_te.dros performed on 2015-02-02 19:09:41 has no hits.

BO14978.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:51 Download gff for BO14978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-PA 1..564 15..579 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:21 Download gff for BO14978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-PA 1..564 15..579 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:46 Download gff for BO14978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 9..581 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:44 Download gff for BO14978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 9..581 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:44 Download gff for BO14978.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6852040..6852611 9..581 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:46 Download gff for BO14978.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6746073..6746644 9..581 98   Plus

BO14978.5prime Sequence

593 bp (592 high quality bases) assembled on 2006-05-29

> BO14978.5prime
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATGCAAGCTTTCTAGACC

BO14978.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PA 564 CG14434-RA 1..561 17..577 2730 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 1507 CG14434-RC 805..1367 15..577 2770 99.5 Plus
CG14434-RB 987 CG14434-RB 285..847 15..577 2770 99.5 Plus
CG14434-RA 730 CG14434-RA 28..590 15..577 2770 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6852049..6852611 577..15 2770 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 09:18:54 has no hits.

BO14978.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:52 Download gff for BO14978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-PA 1..564 17..581 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:22 Download gff for BO14978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-PA 1..564 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:52:06 Download gff for BO14978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 15..587 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:43:57 Download gff for BO14978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 15..587 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:43:57 Download gff for BO14978.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6852040..6852611 15..587 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:52:06 Download gff for BO14978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6746073..6746644 15..587 98   Minus

BO14978.complete Sequence

595 bp assembled on 2007-10-17

GenBank Submission: FJ633311

> BO14978.complete
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATGCAAGCTTTCTAGACCAT

BO14978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 645 CG14434-PC 80..642 15..577 2770 99.5 Plus
CG14434-RB 564 CG14434-PB 1..561 17..577 2760 99.5 Plus
CG14434-RA 564 CG14434-PA 1..561 17..577 2760 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 1507 CG14434-RC 805..1367 15..577 2770 99.5 Plus
CG14434-RB 987 CG14434-RB 285..847 15..577 2770 99.5 Plus
CG14434-RA 730 CG14434-RA 28..590 15..577 2770 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6852049..6852611 577..15 2770 99.5 Minus
Blast to na_te.dros performed on 2014-11-27 08:12:19 has no hits.

BO14978.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:39 Download gff for BO14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 1..564 17..581 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:02 Download gff for BO14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 15..587 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:43 Download gff for BO14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 30..590 17..579 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:00 Download gff for BO14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 15..575 17..579 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:06 Download gff for BO14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 30..590 17..579 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:06 Download gff for BO14978.complete
Subject Subject Range Query Range Percent Splice Strand
X 6852047..6852609 17..579 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:43 Download gff for BO14978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6746080..6746642 17..579 99   Minus

BO14978.pep Sequence

Translation from 16 to 595

> BO14978.pep
MCESVTPADQRNVEVKARIPGGSEGFEQRLILARNLSGSQDAQLIEQRDV
FFESPLGGRLKLRYLQTPSRSQLVYYDRPDVAGPKLSKFNKTEVDEPEVL
EKILSQSNGVLGVLAKRRHLFLCGQTRIHLDEVKDLGYFMELEVCLTEDQ
TLEEGQAIAEKLSRELGIQEADLMIGSYFDALRKLNHASFLDH

BO14978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PB 187 CG14434-PB 1..187 1..187 949 100 Plus
CG14434-PA 187 CG14434-PA 1..187 1..187 949 100 Plus
CG14434-PC 214 CG14434-PC 28..214 1..187 949 100 Plus