Clone Sequence Records
BO14984.3prime Sequence
572 bp (571 high quality bases) assembled on 2006-05-29
> BO14984.3prime
ATGGTCTAGAAAGCTTGCCTTGCGACTCTGCAGGGTGTTGGACAGCCAGT
CCATGGCCTGGTCGAGTCCCTCGCCCTTGGTGGCCGACGTTTTGAATATT
TGAAATGTGCGGTTCTTTAGGTTCTCCAGTCCTAACGCATGATGGACCTC
GGCGACGGTCATGCATCCGTCCATGTCCTGCTTGTTCGCCAGGACGACCA
GTATCGCGCCGGCCAGCTCCTCCTCACGCAGCATGTACAGCAGCTCGTCC
TTGGAGATGCCAATGCGGTCCCGGTCCGCCGAGTCCACCACATAGATGAT
TGCGTCCGTGTTGCTGTAGTAGCAACGCCAATAAGGTCTAATACTTGTCT
GTCCGCCCAAATCCCAGACCTGGAACTTGAGGTTCTTGTAGGTGACCTGC
TCCACGTTGAAGCCGATGGTGGGTATCGTGGTGACCACCTCGCCCACCTG
CAGTCTGTAGAGGATCGTGGTCTTGCCGGCGCCGTCCAGGCCCAGGATCA
AGATGCGCATCTCCCGGGAGCCGAGCAGTCCGCGAAAGTAGCTGAGCACC
CCACCCATGTCGACTGATAACT
BO14984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6025-PA | 543 | Arf72A-RA | 1..540 | 558..19 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 863 | CG6025-RA | 142..682 | 559..19 | 2705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15983860..15984181 | 340..19 | 1610 | 100 | Minus |
3L | 28110227 | 3L | 15983377..15983594 | 555..338 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:09:17 has no hits.
BO14984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:00 Download gff for
BO14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6025-PA | 1..543 | 18..558 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:33 Download gff for
BO14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6025-PA | 1..543 | 18..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:44 Download gff for
BO14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..682 | 19..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:41 Download gff for
BO14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..682 | 19..567 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:41 Download gff for
BO14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15983373..15983594 | 338..563 | 98 | -> | Minus |
3L | 15983863..15984181 | 19..337 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:44 Download gff for
BO14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15976473..15976694 | 338..563 | 98 | -> | Minus |
arm_3L | 15976963..15977281 | 19..337 | 100 | | Minus |
BO14984.5prime Sequence
572 bp (571 high quality bases) assembled on 2006-05-29
> BO14984.5prime
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGGCAAGCTTTCTAGACC
BO14984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6025-PA | 543 | Arf72A-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 863 | CG6025-RA | 142..682 | 16..556 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15983860..15984181 | 235..556 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 15983377..15983594 | 20..237 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:06:38 has no hits.
BO14984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:01 Download gff for
BO14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6025-PA | 1..543 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:34 Download gff for
BO14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6025-PA | 1..543 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:40 Download gff for
BO14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..682 | 8..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:01 Download gff for
BO14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..682 | 8..556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:01 Download gff for
BO14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15983373..15983594 | 12..237 | 98 | -> | Plus |
3L | 15983863..15984181 | 238..556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:40 Download gff for
BO14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15976473..15976694 | 12..237 | 98 | -> | Plus |
arm_3L | 15976963..15977281 | 238..556 | 100 | | Plus |
BO14984.complete Sequence
574 bp (574 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633313
> BO14984.complete
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGGCAAGCTTTCTAGACCAT
BO14984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 543 | CG6025-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 863 | CG6025-RA | 142..682 | 16..556 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15983860..15984181 | 235..556 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 15983377..15983594 | 20..237 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:05:17 has no hits.
BO14984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:58 Download gff for
BO14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf72A-RA | 1..543 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:00 Download gff for
BO14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf72A-RA | 145..696 | 8..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:05 Download gff for
BO14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 143..682 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:58 Download gff for
BO14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf72A-RA | 145..696 | 8..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:43 Download gff for
BO14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 143..682 | 17..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:43 Download gff for
BO14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15983376..15983594 | 17..237 | 99 | -> | Plus |
3L | 15983863..15984181 | 238..558 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:05 Download gff for
BO14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15976476..15976694 | 17..237 | 99 | -> | Plus |
arm_3L | 15976963..15977281 | 238..558 | 99 | | Plus |
BO14984.pep Sequence
Translation from 16 to 574
> BO14984.pep
MGGVLSYFRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF
NVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIG
ISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNR
TFQIFKTSATKGEGLDQAMDWLSNTLQSRKASFLDH
BO14984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-PA | 180 | CG6025-PA | 1..180 | 1..180 | 926 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 1..179 | 1..178 | 548 | 57.5 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..179 | 1..178 | 548 | 57.5 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..179 | 1..178 | 548 | 57.5 | Plus |
Arf79F-PF | 182 | CG8385-PF | 1..179 | 1..178 | 548 | 57.5 | Plus |