Clone BO14984 Report

Search the DGRC for BO14984

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptArf72A-RA
Protein status:BO14984.pep: validated full length
Sequenced Size:574

Clone Sequence Records

BO14984.3prime Sequence

572 bp (571 high quality bases) assembled on 2006-05-29

> BO14984.3prime
ATGGTCTAGAAAGCTTGCCTTGCGACTCTGCAGGGTGTTGGACAGCCAGT
CCATGGCCTGGTCGAGTCCCTCGCCCTTGGTGGCCGACGTTTTGAATATT
TGAAATGTGCGGTTCTTTAGGTTCTCCAGTCCTAACGCATGATGGACCTC
GGCGACGGTCATGCATCCGTCCATGTCCTGCTTGTTCGCCAGGACGACCA
GTATCGCGCCGGCCAGCTCCTCCTCACGCAGCATGTACAGCAGCTCGTCC
TTGGAGATGCCAATGCGGTCCCGGTCCGCCGAGTCCACCACATAGATGAT
TGCGTCCGTGTTGCTGTAGTAGCAACGCCAATAAGGTCTAATACTTGTCT
GTCCGCCCAAATCCCAGACCTGGAACTTGAGGTTCTTGTAGGTGACCTGC
TCCACGTTGAAGCCGATGGTGGGTATCGTGGTGACCACCTCGCCCACCTG
CAGTCTGTAGAGGATCGTGGTCTTGCCGGCGCCGTCCAGGCCCAGGATCA
AGATGCGCATCTCCCGGGAGCCGAGCAGTCCGCGAAAGTAGCTGAGCACC
CCACCCATGTCGACTGATAACT

BO14984.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6025-PA 543 Arf72A-RA 1..540 558..19 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 863 CG6025-RA 142..682 559..19 2705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15983860..15984181 340..19 1610 100 Minus
3L 28110227 3L 15983377..15983594 555..338 1090 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:09:17 has no hits.

BO14984.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:00 Download gff for BO14984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6025-PA 1..543 18..558 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:33 Download gff for BO14984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6025-PA 1..543 18..558 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:44 Download gff for BO14984.3prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..682 19..567 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:41 Download gff for BO14984.3prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..682 19..567 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:41 Download gff for BO14984.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15983373..15983594 338..563 98 -> Minus
3L 15983863..15984181 19..337 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:44 Download gff for BO14984.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15976473..15976694 338..563 98 -> Minus
arm_3L 15976963..15977281 19..337 100   Minus

BO14984.5prime Sequence

572 bp (571 high quality bases) assembled on 2006-05-29

> BO14984.5prime
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGGCAAGCTTTCTAGACC

BO14984.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6025-PA 543 Arf72A-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 863 CG6025-RA 142..682 16..556 2705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15983860..15984181 235..556 1610 100 Plus
3L 28110227 3L 15983377..15983594 20..237 1090 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:06:38 has no hits.

BO14984.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:01 Download gff for BO14984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6025-PA 1..543 17..557 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:34 Download gff for BO14984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6025-PA 1..543 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:40 Download gff for BO14984.5prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..682 8..556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:20:01 Download gff for BO14984.5prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..682 8..556 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:20:01 Download gff for BO14984.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15983373..15983594 12..237 98 -> Plus
3L 15983863..15984181 238..556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:40 Download gff for BO14984.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15976473..15976694 12..237 98 -> Plus
arm_3L 15976963..15977281 238..556 100   Plus

BO14984.complete Sequence

574 bp (574 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633313

> BO14984.complete
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGGCAAGCTTTCTAGACCAT

BO14984.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 543 CG6025-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 863 CG6025-RA 142..682 16..556 2705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15983860..15984181 235..556 1610 100 Plus
3L 28110227 3L 15983377..15983594 20..237 1090 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:05:17 has no hits.

BO14984.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:58 Download gff for BO14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arf72A-RA 1..543 17..557 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:00 Download gff for BO14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arf72A-RA 145..696 8..556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:05 Download gff for BO14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 143..682 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:58 Download gff for BO14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arf72A-RA 145..696 8..556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:43 Download gff for BO14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 143..682 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:43 Download gff for BO14984.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15983376..15983594 17..237 99 -> Plus
3L 15983863..15984181 238..558 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:05 Download gff for BO14984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15976476..15976694 17..237 99 -> Plus
arm_3L 15976963..15977281 238..558 99   Plus

BO14984.pep Sequence

Translation from 16 to 574

> BO14984.pep
MGGVLSYFRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF
NVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIG
ISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNR
TFQIFKTSATKGEGLDQAMDWLSNTLQSRKASFLDH

BO14984.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-PA 180 CG6025-PA 1..180 1..180 926 100 Plus
Arf79F-PJ 182 CG8385-PJ 1..179 1..178 548 57.5 Plus
Arf79F-PI 182 CG8385-PI 1..179 1..178 548 57.5 Plus
Arf79F-PH 182 CG8385-PH 1..179 1..178 548 57.5 Plus
Arf79F-PF 182 CG8385-PF 1..179 1..178 548 57.5 Plus