Clone Sequence Records
BO14986.3prime Sequence
445 bp (378 high quality bases) assembled on 2006-05-29
> BO14986.3prime
ATGGTCTAGAAAGCTTGCATCAACGATGGTCATTCCCATACGATCAGTGA
TATAGGACTTGACTGCTTCGAGTGCAACCTCTTGCACATGCCGGTTATTT
AGTATTAGTCTTGCGACATCTCGAACGCGTACATTTCTAACTTCGGATAT
GGCCCTGATCACGTGCTGCTCCAGTTCTCGACGCTGACTCTCCGTCAAAT
CGTTCAAAATGACCTCACTTAGAGATTTGAAATTTCCCTCCGTAAGTCCG
TAGGCGGTGAGACCACCGATGGCCCCGCCCAGTGCCAGTCCCCGGGGGCC
CAGCAGTAGTCCTCCGATCAGCGCAGCGCCAGCACAAATTGCAGCTCCCT
TGCCGGCCTCCTTGATGGTCAACTGGATATTTTTATCGTCGGCCAGTATA
GCCAGGGCATTGATTATCTCTGAGATGGCTGAATCCATGTCGACT
BO14986.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-PA | 423 | CG11671-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-RA | 681 | CG11671-RA | 164..583 | 438..19 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8288297..8288515 | 237..19 | 1095 | 100 | Minus |
| 3R | 32079331 | 3R | 8288039..8288241 | 438..236 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:45:36 has no hits.
BO14986.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:04 Download gff for
BO14986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-PA | 1..423 | 18..438 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:38 Download gff for
BO14986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-PA | 1..423 | 18..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:32 Download gff for
BO14986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..591 | 10..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:03 Download gff for
BO14986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..591 | 10..438 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:03 Download gff for
BO14986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8288039..8288240 | 237..438 | 100 | -> | Minus |
| 3R | 8288298..8288523 | 10..236 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:32 Download gff for
BO14986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4113761..4113962 | 237..438 | 100 | -> | Minus |
| arm_3R | 4114020..4114245 | 10..236 | 98 | | Minus |
BO14986.5prime Sequence
452 bp (451 high quality bases) assembled on 2006-05-29
> BO14986.5prime
GAAGTTATCAGTCGACATGGATTCAGCCATCTCAGAGATAATCAATGCCC
TGGCTATACTGGCCGACGATAAAAATATCCAGTTGACCATCAAGGAGGCC
GGCAAGGGAGCTGCAATTTGTGCTGGCGCTGCGCTGATCGGAGGACTACT
GCTGGGCCCCCGGGGACTGGCACTGGGCGGGGCCATCGGTGGTCTCACCG
CCTACGGACTTACGGAGGGAAATTTCAAATCTCTAAGTGAGGTCATTTTG
AACGATTTGACGGAGAGTCAGCGTCGAGAACTGGAGCAGCACGTGATCAG
GGCCATATCCGAAGTTAGAAATGTACGCGTTCGAGATGTCGCAAGACTAA
TACTAAATAACCGGCATGTGCAAGAGGTTGCACTCGAAGCAGTCAAGTCC
TATATCACTGATCGTATGGGAATGACCATCGTTGATGCAAGCTTTCTAGA
CC
BO14986.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-PA | 423 | CG11671-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-RA | 681 | CG11671-RA | 164..583 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8288297..8288515 | 218..436 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 8288039..8288241 | 17..219 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:44:57 has no hits.
BO14986.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:05 Download gff for
BO14986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-PA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:40 Download gff for
BO14986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-PA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 14:56:47 Download gff for
BO14986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..591 | 17..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:12 Download gff for
BO14986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..591 | 17..445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:12 Download gff for
BO14986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8288039..8288240 | 17..218 | 100 | -> | Plus |
| 3R | 8288298..8288523 | 219..445 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:56:47 Download gff for
BO14986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4113761..4113962 | 17..218 | 100 | -> | Plus |
| arm_3R | 4114020..4114245 | 219..445 | 98 | | Plus |
BO14986.complete Sequence
454 bp (454 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633314
> BO14986.complete
GAAGTTATCAGTCGACATGGATTCAGCCATCTCAGAGATAATCAATGCCC
TGGCTATACTGGCCGACGATAAAAATATCCAGTTGACCATCAAGGAGGCC
GGCAAGGGAGCTGCAATTTGTGCTGGCGCTGCGCTGATCGGAGGACTACT
GCTGGGCCCCCGGGGACTGGCACTGGGCGGGGCCATCGGTGGTCTCACCG
CCTACGGACTTACGGAGGGAAATTTCAAATCTCTAAGTGAGGTCATTTTG
AACGATTTGACGGAGAGTCAGCGTCGAGAACTGGAGCAGCACGTGATCAG
GGCCATATCCGAAGTTAGAAATGTACGCGTTCGAGATGTCGCAAGACTAA
TACTAAATAACCGGCATGTGCAAGAGGTTGCACTCGAAGCAGTCAAGTCC
TATATCACTGATCGTATGGGAATGACCATCGTTGATGCAAGCTTTCTAGA
CCAT
BO14986.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-RA | 423 | CG11671-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-RA | 681 | CG11671-RA | 164..583 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8288297..8288515 | 218..436 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 8288039..8288241 | 17..219 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:02:01 has no hits.
BO14986.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:59 Download gff for
BO14986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:32 Download gff for
BO14986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 101..528 | 17..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:26 Download gff for
BO14986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..583 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:59 Download gff for
BO14986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 101..528 | 17..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:00 Download gff for
BO14986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11671-RA | 164..583 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:00 Download gff for
BO14986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8288039..8288240 | 17..218 | 100 | -> | Plus |
| 3R | 8288298..8288515 | 219..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:26 Download gff for
BO14986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4113761..4113962 | 17..218 | 100 | -> | Plus |
| arm_3R | 4114020..4114237 | 219..438 | 99 | | Plus |
BO14986.pep Sequence
Translation from 16 to 454
> BO14986.pep
MDSAISEIINALAILADDKNIQLTIKEAGKGAAICAGAALIGGLLLGPRG
LALGGAIGGLTAYGLTEGNFKSLSEVILNDLTESQRRELEQHVIRAISEV
RNVRVRDVARLILNNRHVQEVALEAVKSYITDRMGMTIVDASFLDH
BO14986.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11671-PA | 140 | CG11671-PA | 1..140 | 1..140 | 678 | 100 | Plus |
| CG3740-PA | 140 | CG3740-PA | 7..140 | 7..140 | 349 | 47.8 | Plus |
