Clone BO14987 Report

Search the DGRC for BO14987

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG5323-RA
Protein status:BO14987.pep: validated full length
Sequenced Size:472

Clone Sequence Records

BO14987.3prime Sequence

470 bp (469 high quality bases) assembled on 2006-05-29

> BO14987.3prime
ATGGTCTAGAAAGCTTGCGACTTGGGGAATGCTCTCGGGTCCCTTGGAGA
GCACAGCCTTCATGGTCTTCATCATGCCGGGAATGAGGCCCACATGCTTG
TCCACACACTGGATGGCACAGCGCTCGAATTGGTCGGTGTACTTGGCTAT
CTGATCCTCATTGGGACTGGGCGGCATTTTCACCTTCACATCGTCGTTGC
ATTGCATGACGCAACGTTGAAGTCTGCCCTGGAACTCGCCCAATTCGTGT
TGAACGTAGTTCTGTGCCCTCGTCATGGGCGCGGAGCATCGATCCACACA
TCTCTGAACACTGTCCACGCTGGAGGTTCCATCCTGGCAGCACTTGGCCG
CACACAAGTGCATCTCATTCTGCATTTTGCGTAGGTGCGTCTTGTCCATG
TCGTCGATCATCTCCGTTACCGCGGCCTCGATTTTCTGGCGCTGTTGCTG
GATCATGTCGACTGATAACT

BO14987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-PA 441 CG5323-RA 1..438 456..19 2140 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 783 CG5323-RA 102..539 456..19 2160 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18615569..18615755 205..19 935 100 Minus
2R 25286936 2R 18615305..18615472 372..205 825 99.4 Minus
2R 25286936 2R 18615161..18615247 456..370 420 98.9 Minus
Blast to na_te.dros performed on 2015-01-31 10:55:14 has no hits.

BO14987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:06 Download gff for BO14987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-PA 1..441 15..456 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:41 Download gff for BO14987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-PA 1..441 15..456 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:31 Download gff for BO14987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 12..463 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:51:58 Download gff for BO14987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 12..463 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:51:58 Download gff for BO14987.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18615155..18615247 370..463 95 -> Minus
2R 18615308..18615472 205..369 99 -> Minus
2R 18615570..18615760 12..204 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:31 Download gff for BO14987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14502660..14502752 370..463 95 -> Minus
arm_2R 14502813..14502977 205..369 99 -> Minus
arm_2R 14503075..14503265 12..204 98   Minus

BO14987.5prime Sequence

470 bp (469 high quality bases) assembled on 2006-05-29

> BO14987.5prime
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCGCAAGCTTTCTAGACC

BO14987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-PA 441 CG5323-RA 1..438 17..454 2140 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 783 CG5323-RA 102..539 17..454 2160 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18615569..18615755 268..454 935 100 Plus
2R 25286936 2R 18615305..18615472 101..268 825 99.4 Plus
2R 25286936 2R 18615161..18615247 17..103 420 98.9 Plus
Blast to na_te.dros performed on 2015-02-11 13:17:21 has no hits.

BO14987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:07 Download gff for BO14987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-PA 1..441 17..458 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:42 Download gff for BO14987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-PA 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:35 Download gff for BO14987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 10..461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:03 Download gff for BO14987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 10..461 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:03 Download gff for BO14987.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18615155..18615247 10..103 95 -> Plus
2R 18615308..18615472 104..268 99 -> Plus
2R 18615570..18615760 269..461 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:35 Download gff for BO14987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14502660..14502752 10..103 95 -> Plus
arm_2R 14502813..14502977 104..268 99 -> Plus
arm_2R 14503075..14503265 269..461 98   Plus

BO14987.complete Sequence

472 bp (472 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633315

> BO14987.complete
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCGCAAGCTTTCTAGACCAT

BO14987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 441 CG5323-PA 1..438 17..454 2160 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 783 CG5323-RA 102..539 17..454 2160 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18615569..18615755 268..454 935 100 Plus
2R 25286936 2R 18615305..18615472 101..268 825 99.4 Plus
2R 25286936 2R 18615161..18615247 17..103 420 98.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:18:52 has no hits.

BO14987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:00 Download gff for BO14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:34 Download gff for BO14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 75..523 10..461 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:17 Download gff for BO14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 102..539 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:00 Download gff for BO14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 75..523 10..461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:48 Download gff for BO14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 102..539 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:48 Download gff for BO14987.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18615161..18615247 17..103 98 -> Plus
2R 18615308..18615472 104..268 99 -> Plus
2R 18615570..18615755 269..456 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:17 Download gff for BO14987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14502666..14502752 17..103 98 -> Plus
arm_2R 14502813..14502977 104..268 99 -> Plus
arm_2R 14503075..14503260 269..456 98   Plus

BO14987.pep Sequence

Translation from 16 to 472

> BO14987.pep
MIQQQRQKIEAAVTEMIDDMDKTHLRKMQNEMHLCAAKCCQDGTSSVDSV
QRCVDRCSAPMTRAQNYVQHELGEFQGRLQRCVMQCNDDVKVKMPPSPNE
DQIAKYTDQFERCAIQCVDKHVGLIPGMMKTMKAVLSKGPESIPQVASFL
DH

BO14987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-PA 146 CG5323-PA 1..146 1..146 778 100 Plus
CG5327-PA 149 CG5327-PA 1..140 1..140 424 47.1 Plus
CG12661-PB 131 CG12661-PB 8..130 2..139 287 34.8 Plus
CG12661-PA 131 CG12661-PA 8..130 2..139 287 34.8 Plus