Clone Sequence Records
BO14987.3prime Sequence
470 bp (469 high quality bases) assembled on 2006-05-29
> BO14987.3prime
ATGGTCTAGAAAGCTTGCGACTTGGGGAATGCTCTCGGGTCCCTTGGAGA
GCACAGCCTTCATGGTCTTCATCATGCCGGGAATGAGGCCCACATGCTTG
TCCACACACTGGATGGCACAGCGCTCGAATTGGTCGGTGTACTTGGCTAT
CTGATCCTCATTGGGACTGGGCGGCATTTTCACCTTCACATCGTCGTTGC
ATTGCATGACGCAACGTTGAAGTCTGCCCTGGAACTCGCCCAATTCGTGT
TGAACGTAGTTCTGTGCCCTCGTCATGGGCGCGGAGCATCGATCCACACA
TCTCTGAACACTGTCCACGCTGGAGGTTCCATCCTGGCAGCACTTGGCCG
CACACAAGTGCATCTCATTCTGCATTTTGCGTAGGTGCGTCTTGTCCATG
TCGTCGATCATCTCCGTTACCGCGGCCTCGATTTTCTGGCGCTGTTGCTG
GATCATGTCGACTGATAACT
BO14987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-PA | 441 | CG5323-RA | 1..438 | 456..19 | 2140 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 783 | CG5323-RA | 102..539 | 456..19 | 2160 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18615569..18615755 | 205..19 | 935 | 100 | Minus |
2R | 25286936 | 2R | 18615305..18615472 | 372..205 | 825 | 99.4 | Minus |
2R | 25286936 | 2R | 18615161..18615247 | 456..370 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:55:14 has no hits.
BO14987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:06 Download gff for
BO14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-PA | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:41 Download gff for
BO14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-PA | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:31 Download gff for
BO14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 12..463 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:51:58 Download gff for
BO14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 12..463 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:51:58 Download gff for
BO14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18615155..18615247 | 370..463 | 95 | -> | Minus |
2R | 18615308..18615472 | 205..369 | 99 | -> | Minus |
2R | 18615570..18615760 | 12..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:31 Download gff for
BO14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14502660..14502752 | 370..463 | 95 | -> | Minus |
arm_2R | 14502813..14502977 | 205..369 | 99 | -> | Minus |
arm_2R | 14503075..14503265 | 12..204 | 98 | | Minus |
BO14987.5prime Sequence
470 bp (469 high quality bases) assembled on 2006-05-29
> BO14987.5prime
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCGCAAGCTTTCTAGACC
BO14987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-PA | 441 | CG5323-RA | 1..438 | 17..454 | 2140 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 783 | CG5323-RA | 102..539 | 17..454 | 2160 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18615569..18615755 | 268..454 | 935 | 100 | Plus |
2R | 25286936 | 2R | 18615305..18615472 | 101..268 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 18615161..18615247 | 17..103 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:17:21 has no hits.
BO14987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:07 Download gff for
BO14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:42 Download gff for
BO14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:35 Download gff for
BO14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 10..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:03 Download gff for
BO14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 10..461 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:03 Download gff for
BO14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18615155..18615247 | 10..103 | 95 | -> | Plus |
2R | 18615308..18615472 | 104..268 | 99 | -> | Plus |
2R | 18615570..18615760 | 269..461 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:35 Download gff for
BO14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14502660..14502752 | 10..103 | 95 | -> | Plus |
arm_2R | 14502813..14502977 | 104..268 | 99 | -> | Plus |
arm_2R | 14503075..14503265 | 269..461 | 98 | | Plus |
BO14987.complete Sequence
472 bp (472 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633315
> BO14987.complete
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCGCAAGCTTTCTAGACCAT
BO14987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 441 | CG5323-PA | 1..438 | 17..454 | 2160 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 783 | CG5323-RA | 102..539 | 17..454 | 2160 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18615569..18615755 | 268..454 | 935 | 100 | Plus |
2R | 25286936 | 2R | 18615305..18615472 | 101..268 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 18615161..18615247 | 17..103 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:18:52 has no hits.
BO14987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:00 Download gff for
BO14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:34 Download gff for
BO14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 75..523 | 10..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:17 Download gff for
BO14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 102..539 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:00 Download gff for
BO14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 75..523 | 10..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:48 Download gff for
BO14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 102..539 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:48 Download gff for
BO14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18615161..18615247 | 17..103 | 98 | -> | Plus |
2R | 18615308..18615472 | 104..268 | 99 | -> | Plus |
2R | 18615570..18615755 | 269..456 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:17 Download gff for
BO14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14502666..14502752 | 17..103 | 98 | -> | Plus |
arm_2R | 14502813..14502977 | 104..268 | 99 | -> | Plus |
arm_2R | 14503075..14503260 | 269..456 | 98 | | Plus |
BO14987.pep Sequence
Translation from 16 to 472
> BO14987.pep
MIQQQRQKIEAAVTEMIDDMDKTHLRKMQNEMHLCAAKCCQDGTSSVDSV
QRCVDRCSAPMTRAQNYVQHELGEFQGRLQRCVMQCNDDVKVKMPPSPNE
DQIAKYTDQFERCAIQCVDKHVGLIPGMMKTMKAVLSKGPESIPQVASFL
DH
BO14987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-PA | 146 | CG5323-PA | 1..146 | 1..146 | 778 | 100 | Plus |
CG5327-PA | 149 | CG5327-PA | 1..140 | 1..140 | 424 | 47.1 | Plus |
CG12661-PB | 131 | CG12661-PB | 8..130 | 2..139 | 287 | 34.8 | Plus |
CG12661-PA | 131 | CG12661-PA | 8..130 | 2..139 | 287 | 34.8 | Plus |