Clone Sequence Records
BO14988.3prime Sequence
648 bp (573 high quality bases) assembled on 2006-05-29
> BO14988.3prime
ATGGTCTAGAAAGCTTGCCACTTTGAAGCCGGAGTGAATGCTGACCACGC
CGAAGGTTAGGTTCTCGTAGGACACCTGATCGAATCCGGCCTGCTCGATC
ATTTGCTTGAATTGCTCCTGCTTGGGAAACCGTCGGATGCTCTCAACGAG
ATACTGGTACGCCTGCCACTGACCAGCCAGCAATTGGCCCATCGGCGGAA
TCACCTGGAAGGAGTACTGGTCATATAGCCATTGCATCGTTTCGTTCGTC
AGATGACTGAACTCCAGGCACATGAATCGTCCGCCCGGCTGCAGCACTCG
ATACGCTTCAGAAAGAACCTTATCCACATGTGTGCAGTTCCTGATGCCAA
AGGCAATAGTGTAGGCCGTAAAGCTAGCGTCCGGGAAGGGCAACTTCTCG
GCATCGGCGCACTGCCATGCGACGGTGCAGTTGGACAGCTGGTCGGTGGT
AAGTCCCAGCCTCTTGGCCCGCTCCTCGCCCACGTTTAGCATGTGCTGGT
TGATGTCCGACACAGTGACGTGGCTGGGACGCTGTTGGGGATTCGGCTGG
TTGTTCAGATAACGCAGGTAGCGGAAGGTGATGTCCCCGGTGCCGCCAGC
CATGTCCAGCAAGCGCATACCGTGCGTGGGACCCAGACGTTCGACGAA
BO14988.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-PA | 906 | CG2453-RA | 274..900 | 648..22 | 3085 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 1347 | CG2453-RC | 477..1103 | 648..22 | 3105 | 99.7 | Minus |
CG2453-RB | 1231 | CG2453-RB | 361..987 | 648..22 | 3105 | 99.7 | Minus |
CG2453-RA | 1188 | CG2453-RA | 318..944 | 648..22 | 3105 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13193686..13194017 | 317..648 | 1645 | 99.7 | Plus |
X | 23542271 | X | 13193338..13193638 | 22..322 | 1490 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:42:34 has no hits.
BO14988.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:07 Download gff for
BO14988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-PA | 276..906 | 16..646 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:44 Download gff for
BO14988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-PA | 276..906 | 16..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:58 Download gff for
BO14988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 299..935 | 13..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:19 Download gff for
BO14988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 318..954 | 13..648 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:19 Download gff for
BO14988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13193328..13193634 | 13..318 | 98 | <- | Plus |
X | 13193688..13194017 | 319..648 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:58 Download gff for
BO14988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13087361..13087667 | 13..318 | 98 | <- | Plus |
arm_X | 13087721..13088050 | 319..648 | 99 | | Plus |
BO14988.5prime Sequence
782 bp (699 high quality bases) assembled on 2006-05-29
> BO14988.5prime
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGAATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAAC
GACCGCAATGGCTATATGACCAGTACTCCTTCCAAGTGATTCCGCCGATG
GGCCCATTGCTGGCTGGTCAGTGGCAGGCGTA
BO14988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-PA | 906 | CG2453-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG2453-PA | 906 | CG2453-RA | 687..764 | 705..782 | 315 | 96.1 | Plus |
CG2453-PA | 906 | CG2453-RA | 645..685 | 662..702 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 1347 | CG2453-RC | 204..967 | 17..782 | 3720 | 99.2 | Plus |
CG2453-RB | 1231 | CG2453-RB | 88..851 | 17..782 | 3720 | 99.2 | Plus |
CG2453-RA | 1188 | CG2453-RA | 45..808 | 17..782 | 3720 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13193686..13194107 | 621..200 | 2110 | 100 | Minus |
X | 23542271 | X | 13194165..13194348 | 200..17 | 920 | 100 | Minus |
X | 23542271 | X | 13193474..13193638 | 782..616 | 675 | 96.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:52:14 has no hits.
BO14988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:09 Download gff for
BO14988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-PA | 1..763 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:45 Download gff for
BO14988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-PA | 1..763 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:02 Download gff for
BO14988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 17..788 | 7..781 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:37 Download gff for
BO14988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 36..807 | 7..781 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:37 Download gff for
BO14988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13193475..13193634 | 620..781 | 96 | <- | Minus |
X | 13193688..13194106 | 201..619 | 100 | <- | Minus |
X | 13194165..13194357 | 7..200 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:02 Download gff for
BO14988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13087508..13087667 | 620..781 | 96 | <- | Minus |
arm_X | 13087721..13088139 | 201..619 | 100 | <- | Minus |
arm_X | 13088198..13088390 | 7..200 | 97 | | Minus |
BO14988.complete Sequence
937 bp assembled on 2008-11-10
GenBank Submission: KX793828
> BO14988.complete
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACG
ATGCAATGGCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGG
CCAATTGCTGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCA
TCCGACGGTTTCCCAAGCAGGAGCAATTCAAGCAAATGATCGAGCAGGCC
GGATTCGATCAGGTGTCCTACGAGAACCTAACCTTCGGCGTGGTCAGCAT
TCACTCCGGCTTCAAACTGGCAAGCTTTCTAGACCAT
BO14988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 906 | CG2453-PC | 1..903 | 17..919 | 4500 | 99.9 | Plus |
CG2453-RB | 906 | CG2453-PB | 1..903 | 17..919 | 4500 | 99.9 | Plus |
CG2453-RA | 906 | CG2453-PA | 1..903 | 17..919 | 4500 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 1347 | CG2453-RC | 204..1106 | 17..919 | 4500 | 99.9 | Plus |
CG2453-RB | 1231 | CG2453-RB | 88..990 | 17..919 | 4500 | 99.9 | Plus |
CG2453-RA | 1188 | CG2453-RA | 45..947 | 17..919 | 4500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13193686..13194107 | 621..200 | 2110 | 100 | Minus |
X | 23542271 | X | 13193335..13193638 | 919..616 | 1505 | 99.7 | Minus |
X | 23542271 | X | 13194165..13194348 | 200..17 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:24:41 has no hits.
BO14988.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:26 Download gff for
BO14988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 17..935 | 7..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:09 Download gff for
BO14988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 26..928 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:06 Download gff for
BO14988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 26..928 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:51 Download gff for
BO14988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 45..947 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:51 Download gff for
BO14988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13193331..13193634 | 620..921 | 99 | <- | Minus |
X | 13193688..13194106 | 201..619 | 100 | <- | Minus |
X | 13194165..13194348 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:09 Download gff for
BO14988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13087364..13087667 | 620..921 | 99 | <- | Minus |
arm_X | 13087721..13088139 | 201..619 | 100 | <- | Minus |
arm_X | 13088198..13088381 | 17..200 | 100 | | Minus |
BO14988.pep Sequence
Translation from 16 to 937
> BO14988.pep
MQTTRSTRLLSLARRFVHTRTASQSAQNSKGMASGAESISGKEKTTHFGF
QTVRESEKEQKVHEVFEQVANSYDVMNDAMSLGIHRVWKDVFVERLGPTH
GMRLLDMAGGTGDITFRYLRYLNNQPNPQQRPSHVTVSDINQHMLNVGEE
RAKRLGLTTDQLSNCTVAWQCADAEKLPFPDASFTAYTIAFGIRNCTHVD
KVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQLLAG
QWQAYQYLVESIRRFPKQEQFKQMIEQAGFDQVSYENLTFGVVSIHSGFK
LASFLDH
BO14988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-PC | 301 | CG2453-PC | 1..301 | 1..301 | 1580 | 100 | Plus |
CG2453-PB | 301 | CG2453-PB | 1..301 | 1..301 | 1580 | 100 | Plus |
CG2453-PA | 301 | CG2453-PA | 1..301 | 1..301 | 1580 | 100 | Plus |