Clone BO14988 Report

Search the DGRC for BO14988

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG2453-RA
Protein status:BO14988.pep: Imported from assembly
Sequenced Size:937

Clone Sequence Records

BO14988.3prime Sequence

648 bp (573 high quality bases) assembled on 2006-05-29

> BO14988.3prime
ATGGTCTAGAAAGCTTGCCACTTTGAAGCCGGAGTGAATGCTGACCACGC
CGAAGGTTAGGTTCTCGTAGGACACCTGATCGAATCCGGCCTGCTCGATC
ATTTGCTTGAATTGCTCCTGCTTGGGAAACCGTCGGATGCTCTCAACGAG
ATACTGGTACGCCTGCCACTGACCAGCCAGCAATTGGCCCATCGGCGGAA
TCACCTGGAAGGAGTACTGGTCATATAGCCATTGCATCGTTTCGTTCGTC
AGATGACTGAACTCCAGGCACATGAATCGTCCGCCCGGCTGCAGCACTCG
ATACGCTTCAGAAAGAACCTTATCCACATGTGTGCAGTTCCTGATGCCAA
AGGCAATAGTGTAGGCCGTAAAGCTAGCGTCCGGGAAGGGCAACTTCTCG
GCATCGGCGCACTGCCATGCGACGGTGCAGTTGGACAGCTGGTCGGTGGT
AAGTCCCAGCCTCTTGGCCCGCTCCTCGCCCACGTTTAGCATGTGCTGGT
TGATGTCCGACACAGTGACGTGGCTGGGACGCTGTTGGGGATTCGGCTGG
TTGTTCAGATAACGCAGGTAGCGGAAGGTGATGTCCCCGGTGCCGCCAGC
CATGTCCAGCAAGCGCATACCGTGCGTGGGACCCAGACGTTCGACGAA

BO14988.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PA 906 CG2453-RA 274..900 648..22 3085 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 1347 CG2453-RC 477..1103 648..22 3105 99.7 Minus
CG2453-RB 1231 CG2453-RB 361..987 648..22 3105 99.7 Minus
CG2453-RA 1188 CG2453-RA 318..944 648..22 3105 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13193686..13194017 317..648 1645 99.7 Plus
X 23542271 X 13193338..13193638 22..322 1490 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 22:42:34 has no hits.

BO14988.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:07 Download gff for BO14988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-PA 276..906 16..646 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:44 Download gff for BO14988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-PA 276..906 16..646 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:58 Download gff for BO14988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 299..935 13..648 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:19 Download gff for BO14988.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 318..954 13..648 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:19 Download gff for BO14988.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13193328..13193634 13..318 98 <- Plus
X 13193688..13194017 319..648 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:58 Download gff for BO14988.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13087361..13087667 13..318 98 <- Plus
arm_X 13087721..13088050 319..648 99   Plus

BO14988.5prime Sequence

782 bp (699 high quality bases) assembled on 2006-05-29

> BO14988.5prime
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGAATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAAC
GACCGCAATGGCTATATGACCAGTACTCCTTCCAAGTGATTCCGCCGATG
GGCCCATTGCTGGCTGGTCAGTGGCAGGCGTA

BO14988.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PA 906 CG2453-RA 1..645 17..661 3225 100 Plus
CG2453-PA 906 CG2453-RA 687..764 705..782 315 96.1 Plus
CG2453-PA 906 CG2453-RA 645..685 662..702 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 1347 CG2453-RC 204..967 17..782 3720 99.2 Plus
CG2453-RB 1231 CG2453-RB 88..851 17..782 3720 99.2 Plus
CG2453-RA 1188 CG2453-RA 45..808 17..782 3720 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13193686..13194107 621..200 2110 100 Minus
X 23542271 X 13194165..13194348 200..17 920 100 Minus
X 23542271 X 13193474..13193638 782..616 675 96.4 Minus
Blast to na_te.dros performed on 2015-02-09 22:52:14 has no hits.

BO14988.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:09 Download gff for BO14988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-PA 1..763 17..781 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:45 Download gff for BO14988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-PA 1..763 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:02 Download gff for BO14988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 17..788 7..781 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:37 Download gff for BO14988.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 36..807 7..781 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:37 Download gff for BO14988.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13193475..13193634 620..781 96 <- Minus
X 13193688..13194106 201..619 100 <- Minus
X 13194165..13194357 7..200 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:02 Download gff for BO14988.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13087508..13087667 620..781 96 <- Minus
arm_X 13087721..13088139 201..619 100 <- Minus
arm_X 13088198..13088390 7..200 97   Minus

BO14988.complete Sequence

937 bp assembled on 2008-11-10

GenBank Submission: KX793828

> BO14988.complete
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACG
ATGCAATGGCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGG
CCAATTGCTGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCA
TCCGACGGTTTCCCAAGCAGGAGCAATTCAAGCAAATGATCGAGCAGGCC
GGATTCGATCAGGTGTCCTACGAGAACCTAACCTTCGGCGTGGTCAGCAT
TCACTCCGGCTTCAAACTGGCAAGCTTTCTAGACCAT

BO14988.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 906 CG2453-PC 1..903 17..919 4500 99.9 Plus
CG2453-RB 906 CG2453-PB 1..903 17..919 4500 99.9 Plus
CG2453-RA 906 CG2453-PA 1..903 17..919 4500 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 1347 CG2453-RC 204..1106 17..919 4500 99.9 Plus
CG2453-RB 1231 CG2453-RB 88..990 17..919 4500 99.9 Plus
CG2453-RA 1188 CG2453-RA 45..947 17..919 4500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13193686..13194107 621..200 2110 100 Minus
X 23542271 X 13193335..13193638 919..616 1505 99.7 Minus
X 23542271 X 13194165..13194348 200..17 920 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:24:41 has no hits.

BO14988.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:26 Download gff for BO14988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 17..935 7..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:09 Download gff for BO14988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 26..928 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:06 Download gff for BO14988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 26..928 17..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:51 Download gff for BO14988.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 45..947 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:51 Download gff for BO14988.complete
Subject Subject Range Query Range Percent Splice Strand
X 13193331..13193634 620..921 99 <- Minus
X 13193688..13194106 201..619 100 <- Minus
X 13194165..13194348 17..200 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:09 Download gff for BO14988.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13087364..13087667 620..921 99 <- Minus
arm_X 13087721..13088139 201..619 100 <- Minus
arm_X 13088198..13088381 17..200 100   Minus

BO14988.pep Sequence

Translation from 16 to 937

> BO14988.pep
MQTTRSTRLLSLARRFVHTRTASQSAQNSKGMASGAESISGKEKTTHFGF
QTVRESEKEQKVHEVFEQVANSYDVMNDAMSLGIHRVWKDVFVERLGPTH
GMRLLDMAGGTGDITFRYLRYLNNQPNPQQRPSHVTVSDINQHMLNVGEE
RAKRLGLTTDQLSNCTVAWQCADAEKLPFPDASFTAYTIAFGIRNCTHVD
KVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQLLAG
QWQAYQYLVESIRRFPKQEQFKQMIEQAGFDQVSYENLTFGVVSIHSGFK
LASFLDH

BO14988.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PC 301 CG2453-PC 1..301 1..301 1580 100 Plus
CG2453-PB 301 CG2453-PB 1..301 1..301 1580 100 Plus
CG2453-PA 301 CG2453-PA 1..301 1..301 1580 100 Plus