Clone Sequence Records
BO14989.3prime Sequence
500 bp (499 high quality bases) assembled on 2006-05-29
> BO14989.3prime
ATGGTCTAGAAAGCTTGCCTTGGAAATAACAATGGGCCCGGTCTGCTTGG
CGGCATCGCGCTGCTTGAACACGATCTGGTTAGCAATACGGTCCAGATCA
CGCTGTCCAATGGAGCTCAGTTTGCGACCACCGTCCGGGTGCTTCTCGAC
CAAACGGGCGTGCTCCAAGGCCTGCAGAGCCTTGCGGGCAGCACCGTCGG
CGGCGCGGCAGAAGTGCGAGGGGTGGACACCGTTGCGCTTGCGTCCGCCG
TAGATCTTGGTGATCGAACCGACTCCAGCGGGACTGCGGTGGTACAGATG
GCGCAGGATCGAGGCGCAACGCACATAGAACCAGTCGGGATCGTAGGGCG
CCAGCTCCTTGAATTTGGCGGTCTTGACGATGTCCATCTGGTCGGGCACC
TTCAACTTGCCAGTCTTCTTCAAGAAGACGGCGACCGCCTTGGTAACCGC
GTGCTGGTCAATATCCTTCACTGTGACGCCTGGCATGTCGACTGATAACT
BO14989.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4464-PA | 471 | RpS19a-RA | 1..468 | 486..19 | 2340 | 100 | Minus |
CG4464-PB | 471 | RpS19a-RB | 1..468 | 486..19 | 2340 | 100 | Minus |
CG4464-PC | 471 | RpS19a-RC | 1..468 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 678 | CG4464-RE | 93..560 | 486..19 | 2340 | 100 | Minus |
RpS19a-RA | 620 | CG4464-RA | 35..502 | 486..19 | 2340 | 100 | Minus |
RpS19a-RC | 925 | CG4464-RC | 340..807 | 486..19 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16638406..16638802 | 415..19 | 1985 | 100 | Minus |
X | 23542271 | X | 16638233..16638304 | 486..415 | 360 | 100 | Minus |
3R | 32079331 | 3R | 23933136..23933246 | 227..337 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:54 has no hits.
BO14989.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:10 Download gff for
BO14989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4464-PC | 1..471 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:46 Download gff for
BO14989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4464-PC | 1..471 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:53 Download gff for
BO14989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RB | 53..527 | 15..491 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:50 Download gff for
BO14989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 340..810 | 15..486 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:50 Download gff for
BO14989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16638233..16638303 | 416..486 | 100 | -> | Minus |
X | 16638406..16638805 | 15..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:53 Download gff for
BO14989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16532266..16532336 | 416..486 | 100 | -> | Minus |
arm_X | 16532439..16532838 | 15..415 | 99 | | Minus |
BO14989.5prime Sequence
500 bp (499 high quality bases) assembled on 2006-05-29
> BO14989.5prime
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGGCAAGCTTTCTAGACC
BO14989.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4464-PA | 471 | RpS19a-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
CG4464-PB | 471 | RpS19a-RB | 1..468 | 17..484 | 2340 | 100 | Plus |
CG4464-PC | 471 | RpS19a-RC | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 678 | CG4464-RE | 93..560 | 17..484 | 2340 | 100 | Plus |
RpS19a-RA | 620 | CG4464-RA | 35..502 | 17..484 | 2340 | 100 | Plus |
RpS19a-RC | 925 | CG4464-RC | 340..807 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16638406..16638802 | 88..484 | 1985 | 100 | Plus |
X | 23542271 | X | 16638233..16638304 | 17..88 | 360 | 100 | Plus |
3R | 32079331 | 3R | 23933136..23933246 | 276..166 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:34:28 has no hits.
BO14989.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:10 Download gff for
BO14989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4464-PC | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:48 Download gff for
BO14989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4464-PC | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:58 Download gff for
BO14989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RB | 53..527 | 12..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:45 Download gff for
BO14989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 340..810 | 17..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:45 Download gff for
BO14989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16638233..16638303 | 17..87 | 100 | -> | Plus |
X | 16638406..16638805 | 88..488 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:58 Download gff for
BO14989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16532266..16532336 | 17..87 | 100 | -> | Plus |
arm_X | 16532439..16532838 | 88..488 | 99 | | Plus |
BO14989.complete Sequence
502 bp (502 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633316
> BO14989.complete
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGGCAAGCTTTCTAGACC
AT
BO14989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 471 | CG4464-PE | 1..468 | 17..484 | 2340 | 100 | Plus |
RpS19a-RA | 471 | CG4464-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
RpS19a-RC | 471 | CG4464-PC | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 678 | CG4464-RE | 93..560 | 17..484 | 2340 | 100 | Plus |
RpS19a-RA | 620 | CG4464-RA | 35..502 | 17..484 | 2340 | 100 | Plus |
RpS19a-RC | 925 | CG4464-RC | 340..807 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16638406..16638802 | 88..484 | 1985 | 100 | Plus |
X | 23542271 | X | 16638233..16638304 | 17..88 | 360 | 100 | Plus |
3R | 32079331 | 3R | 23933136..23933246 | 276..166 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:52 has no hits.
BO14989.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:01 Download gff for
BO14989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:35 Download gff for
BO14989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 314..784 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:30 Download gff for
BO14989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RB | 57..524 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:01 Download gff for
BO14989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 314..784 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:02 Download gff for
BO14989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 340..807 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:02 Download gff for
BO14989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16638233..16638303 | 17..87 | 100 | -> | Plus |
X | 16638406..16638802 | 88..486 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:30 Download gff for
BO14989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16532266..16532336 | 17..87 | 100 | -> | Plus |
arm_X | 16532439..16532835 | 88..486 | 99 | | Plus |
BO14989.pep Sequence
Translation from 16 to 502
> BO14989.pep
MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDP
DWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAA
RKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQIVFKQRDAAKQTG
PIVISKASFLDH
BO14989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-PE | 156 | CG4464-PE | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PA | 156 | CG4464-PA | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PC | 156 | CG4464-PC | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PB | 156 | CG4464-PB | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PD | 156 | CG4464-PD | 1..156 | 1..156 | 812 | 100 | Plus |