Clone BO14989 Report

Search the DGRC for BO14989

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptRpS19a-RA
Protein status:BO14989.pep: validated full length
Sequenced Size:502

Clone Sequence Records

BO14989.3prime Sequence

500 bp (499 high quality bases) assembled on 2006-05-29

> BO14989.3prime
ATGGTCTAGAAAGCTTGCCTTGGAAATAACAATGGGCCCGGTCTGCTTGG
CGGCATCGCGCTGCTTGAACACGATCTGGTTAGCAATACGGTCCAGATCA
CGCTGTCCAATGGAGCTCAGTTTGCGACCACCGTCCGGGTGCTTCTCGAC
CAAACGGGCGTGCTCCAAGGCCTGCAGAGCCTTGCGGGCAGCACCGTCGG
CGGCGCGGCAGAAGTGCGAGGGGTGGACACCGTTGCGCTTGCGTCCGCCG
TAGATCTTGGTGATCGAACCGACTCCAGCGGGACTGCGGTGGTACAGATG
GCGCAGGATCGAGGCGCAACGCACATAGAACCAGTCGGGATCGTAGGGCG
CCAGCTCCTTGAATTTGGCGGTCTTGACGATGTCCATCTGGTCGGGCACC
TTCAACTTGCCAGTCTTCTTCAAGAAGACGGCGACCGCCTTGGTAACCGC
GTGCTGGTCAATATCCTTCACTGTGACGCCTGGCATGTCGACTGATAACT

BO14989.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4464-PA 471 RpS19a-RA 1..468 486..19 2340 100 Minus
CG4464-PB 471 RpS19a-RB 1..468 486..19 2340 100 Minus
CG4464-PC 471 RpS19a-RC 1..468 486..19 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 678 CG4464-RE 93..560 486..19 2340 100 Minus
RpS19a-RA 620 CG4464-RA 35..502 486..19 2340 100 Minus
RpS19a-RC 925 CG4464-RC 340..807 486..19 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16638406..16638802 415..19 1985 100 Minus
X 23542271 X 16638233..16638304 486..415 360 100 Minus
3R 32079331 3R 23933136..23933246 227..337 195 78.4 Plus
Blast to na_te.dros performed on 2015-02-10 22:41:54 has no hits.

BO14989.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:10 Download gff for BO14989.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4464-PC 1..471 15..486 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:46 Download gff for BO14989.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4464-PC 1..471 15..486 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:48:53 Download gff for BO14989.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RB 53..527 15..491 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:50 Download gff for BO14989.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 340..810 15..486 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:50 Download gff for BO14989.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16638233..16638303 416..486 100 -> Minus
X 16638406..16638805 15..415 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:48:53 Download gff for BO14989.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16532266..16532336 416..486 100 -> Minus
arm_X 16532439..16532838 15..415 99   Minus

BO14989.5prime Sequence

500 bp (499 high quality bases) assembled on 2006-05-29

> BO14989.5prime
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGGCAAGCTTTCTAGACC

BO14989.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4464-PA 471 RpS19a-RA 1..468 17..484 2340 100 Plus
CG4464-PB 471 RpS19a-RB 1..468 17..484 2340 100 Plus
CG4464-PC 471 RpS19a-RC 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 678 CG4464-RE 93..560 17..484 2340 100 Plus
RpS19a-RA 620 CG4464-RA 35..502 17..484 2340 100 Plus
RpS19a-RC 925 CG4464-RC 340..807 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16638406..16638802 88..484 1985 100 Plus
X 23542271 X 16638233..16638304 17..88 360 100 Plus
3R 32079331 3R 23933136..23933246 276..166 195 78.4 Minus
Blast to na_te.dros performed on 2015-02-10 20:34:28 has no hits.

BO14989.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:10 Download gff for BO14989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4464-PC 1..471 17..488 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:48 Download gff for BO14989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4464-PC 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:58 Download gff for BO14989.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RB 53..527 12..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:45 Download gff for BO14989.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 340..810 17..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:45 Download gff for BO14989.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16638233..16638303 17..87 100 -> Plus
X 16638406..16638805 88..488 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:58 Download gff for BO14989.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16532266..16532336 17..87 100 -> Plus
arm_X 16532439..16532838 88..488 99   Plus

BO14989.complete Sequence

502 bp (502 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633316

> BO14989.complete
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGGCAAGCTTTCTAGACC
AT

BO14989.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 471 CG4464-PE 1..468 17..484 2340 100 Plus
RpS19a-RA 471 CG4464-PA 1..468 17..484 2340 100 Plus
RpS19a-RC 471 CG4464-PC 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 678 CG4464-RE 93..560 17..484 2340 100 Plus
RpS19a-RA 620 CG4464-RA 35..502 17..484 2340 100 Plus
RpS19a-RC 925 CG4464-RC 340..807 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16638406..16638802 88..484 1985 100 Plus
X 23542271 X 16638233..16638304 17..88 360 100 Plus
3R 32079331 3R 23933136..23933246 276..166 195 78.4 Minus
Blast to na_te.dros performed on 2014-11-27 13:52:52 has no hits.

BO14989.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:01 Download gff for BO14989.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RA 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:35 Download gff for BO14989.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 314..784 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:30 Download gff for BO14989.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RB 57..524 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:01 Download gff for BO14989.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 314..784 17..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:02 Download gff for BO14989.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 340..807 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:02 Download gff for BO14989.complete
Subject Subject Range Query Range Percent Splice Strand
X 16638233..16638303 17..87 100 -> Plus
X 16638406..16638802 88..486 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:30 Download gff for BO14989.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16532266..16532336 17..87 100 -> Plus
arm_X 16532439..16532835 88..486 99   Plus

BO14989.pep Sequence

Translation from 16 to 502

> BO14989.pep
MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDP
DWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAA
RKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQIVFKQRDAAKQTG
PIVISKASFLDH

BO14989.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-PE 156 CG4464-PE 1..156 1..156 812 100 Plus
RpS19a-PA 156 CG4464-PA 1..156 1..156 812 100 Plus
RpS19a-PC 156 CG4464-PC 1..156 1..156 812 100 Plus
RpS19a-PB 156 CG4464-PB 1..156 1..156 812 100 Plus
RpS19a-PD 156 CG4464-PD 1..156 1..156 812 100 Plus