Clone Sequence Records
BO14990.3prime Sequence
737 bp (736 high quality bases) assembled on 2006-05-29
> BO14990.3prime
ATGGTCTAGAAAGCTTGCTTCGGTTGCAGGAACAGCCGGCTCCTCCTGCT
GGTCCTTTTCCTTGCTGGACAGACCGCGTATGCTGACATCGTAGACGACC
TCCTCGATCTTCTTGACATCATACTTTAAGGCATCGAAGCGCTTTCGCAA
GCCATCGTTCTTCAGGTTCAGCAGACGGAAGCCCGTGTTCAGGTCACCAA
TAAAATGGGAGATATTCAGGGGACGCTCGTAGTCGCCCATGGTGACGGAA
TTGGTAGCGAATCGGGAGAGCTCCGACGCCAACTGCAGTATGCCCAGTAG
ATAGTCCTCCACATCCAGATGGAAGCCCTCAGACTGGCTGATCTTCAATC
CCAGCATTTCGGCCACTGTTTCGCGGGTGACCAAGAAGCCCGCCTCCAGG
TAAATAACCAAGGCAATGATGAAGATCAAACGCTGCGTAATGAAGGTCCA
GTGATCGGAGTATCTGTAGTACTGCCCAGCTGGCACCAGTTCGGCCAATT
TCTGGTACTTTTGGGCACACAGCTCAACCTGTTTGCGGGCTAAGCCGCAG
GCGGCACTAATCTGGCTCAAATCGCTATGAATAATCTGCAGTTTAATCTG
CGCTTCCTTTGACAAATGCTCGATTTCGCGCACCACAATGCGAATGTTCT
CCCTGACTTCCTGTTCATTGTCTATGTACTTTTGGTAGTTGGAGAAGATG
TCCAAGTTCACGAAGTTCGACATGTCGACTGATAACT
BO14990.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11761-PA | 708 | translin-RA | 1..705 | 723..19 | 3500 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trsn-RA | 864 | CG11761-RA | 74..778 | 723..19 | 3510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10479097..10479425 | 19..347 | 1645 | 100 | Plus |
| 2R | 25286936 | 2R | 10479482..10479600 | 348..466 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 10479660..10479756 | 464..560 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 10479823..10479912 | 561..650 | 435 | 98.9 | Plus |
| 2R | 25286936 | 2R | 10479964..10480038 | 649..723 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:51:16 has no hits.
BO14990.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:11 Download gff for
BO14990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11761-PA | 1..708 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:49 Download gff for
BO14990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11761-PA | 1..708 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:08:00 Download gff for
BO14990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 67..784 | 10..730 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:09 Download gff for
BO14990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 67..784 | 10..730 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:09 Download gff for
BO14990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10479091..10479425 | 10..347 | 98 | <- | Plus |
| 2R | 10479482..10479597 | 348..463 | 100 | <- | Plus |
| 2R | 10479660..10479756 | 464..560 | 100 | <- | Plus |
| 2R | 10479823..10479910 | 561..648 | 98 | <- | Plus |
| 2R | 10479964..10480045 | 649..730 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:08:00 Download gff for
BO14990.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6366596..6366930 | 10..347 | 98 | <- | Plus |
| arm_2R | 6366987..6367102 | 348..463 | 100 | <- | Plus |
| arm_2R | 6367165..6367261 | 464..560 | 100 | <- | Plus |
| arm_2R | 6367328..6367415 | 561..648 | 98 | <- | Plus |
| arm_2R | 6367469..6367550 | 649..730 | 95 | | Plus |
BO14990.complete Sequence
739 bp assembled on 2008-08-15
GenBank Submission: FJ633317
> BO14990.complete
GAAGTTATCAGTCGACATGTCGAACTTCGTGAACTTGGACATCTTCTCCA
ACTACCAAAAGTACATAGACAATGAACAGGAAGTCAGGGAGAACATTCGC
ATTGTGGTGCGCGAAATCGAGCATTTGTCAAAGGAAGCGCAGATTAAACT
GCAGATTATTCATAGCGATTTGAGCCAGATTAGTGCCGCCTGCGGCTTAG
CCCGCAAACAGGTTGAGCTGTGTGCCCAAAAGTACCAGAAATTGGCCGAA
CTGGTGCCAGCTGGGCAGTACTACAGATACTCCGATCACTGGACCTTCAT
TACGCAGCGTTTGATCTTCATCATTGCCTTGGTTATTTACCTGGAGGCGG
GCTTCTTGGTCACCCGCGAAACAGTGGCCGAAATGCTGGGATTGAAGATC
AGCCAGTCTGAGGGCTTCCATCTGGATGTGGAGGACTATCTACTGGGCAT
ACTGCAGTTGGCGTCGGAGCTCTCCCGATTCGCTACCAATTCCGTCACCA
TGGGCGACTACGAGCGTCCCCTGAATATCTCCCATTTTATTGGTGACCTG
AACACGGGCTTCCGTCTGCTGAACCTGAAGAACGATGGCTTGCGAAAGCG
CTTCGATGCCTTAAAGTATGATGTCAAGAAGATCGAGGAGGTCGTCTACG
ATGTCAGCATACGCGGTCTGTCCAGCAAGGAAAAGGACCAGCAGGAGGAG
CCGGCTGTTCCTGCAACCGAAGCAAGCTTTCTAGACCAT
BO14990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trsn-RA | 708 | CG11761-PA | 1..705 | 17..721 | 3510 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trsn-RA | 864 | CG11761-RA | 74..778 | 17..721 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10479097..10479425 | 721..393 | 1645 | 100 | Minus |
| 2R | 25286936 | 2R | 10479482..10479600 | 392..274 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 10479660..10479756 | 276..180 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 10479823..10479912 | 179..90 | 435 | 98.9 | Minus |
| 2R | 25286936 | 2R | 10479964..10480038 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:29 has no hits.
BO14990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:42 Download gff for
BO14990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 63..780 | 10..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:45 Download gff for
BO14990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 74..778 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:18 Download gff for
BO14990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 70..774 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:02 Download gff for
BO14990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 74..778 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:02 Download gff for
BO14990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10479964..10480038 | 17..91 | 100 | | Minus |
| 2R | 10479095..10479425 | 393..723 | 99 | <- | Minus |
| 2R | 10479482..10479597 | 277..392 | 100 | <- | Minus |
| 2R | 10479660..10479756 | 180..276 | 100 | <- | Minus |
| 2R | 10479823..10479910 | 92..179 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:45 Download gff for
BO14990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6366600..6366930 | 393..723 | 99 | <- | Minus |
| arm_2R | 6366987..6367102 | 277..392 | 100 | <- | Minus |
| arm_2R | 6367165..6367261 | 180..276 | 100 | <- | Minus |
| arm_2R | 6367328..6367415 | 92..179 | 98 | <- | Minus |
| arm_2R | 6367469..6367543 | 17..91 | 100 | | Minus |
BO14990.pep Sequence
Translation from 16 to 739
> BO14990.pep
MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHS
DLSQISAACGLARKQVELCAQKYQKLAELVPAGQYYRYSDHWTFITQRLI
FIIALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLGILQLAS
ELSRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALK
YDVKKIEEVVYDVSIRGLSSKEKDQQEEPAVPATEASFLDH
BO14990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trsn-PA | 235 | CG11761-PA | 1..235 | 1..235 | 1183 | 100 | Plus |
