Clone Sequence Records
BO14992.3prime Sequence
836 bp (751 high quality bases) assembled on 2006-05-29
> BO14992.3prime
ATGGTCTAGAAAGCTTGCCGGCTTTATGTTGAGGCCATCGACGTACTTGC
GGATCGCCAACACGTCCGTCGGATAGACCCGGCAACAGCCGCCAACGATG
CGCACTCCCAGCTGGATCCACTCGGGCACAAACTTGACCACCTCCTCGCC
GGTTCCAGTCCAATCTCCCTGCTCGACGTCGTAGATCTCGCCGCGATTGC
TGTAGACCACCAGTGGGATGCGATCCGAACCGGCCACTTTGGTAAGCGAT
GATAGCAAAGGGGTCACGAATAGTGGGTTTACACAGTTCAGACCGATCCC
AAGGAGCCGGTTTTCAGCCTTCCGACTTTGGACCAACCGCCAGAGGGAGA
GAGCCGCCTCCGCGAAGTTTTCTCCACTAGCCATGTGCTTTTCATCCATG
CACTGCAGGGAGACCCAGAATTTGGCATCCGGAAAGTTGTCCAGTACTAA
TTCGGTGACTGCCTCTGCCTCCATCAGACATGGAAGTGTTTCCAGGGCCA
ATCCATCCACTCCAGCTGCGAGACAAATCTCAATTCTTGTCTTGTGCCAC
GCCCTCAGCTCCTCCTTGGACATCTTGTCCGCATAGTTGCCGGTGTACTC
AGATCCATCGTGGAGATAGGCGCCATATGGACCTATTGAGCCCATGATCA
GTGGAAGAGCCGACTCCGCTTCAGAACCGATTTCGCTAAGGTACTGTTCC
TTTGCCTGCTTGGCCAGTTGAACGCTCTTTTGGATCAACTCCACACCTCG
TTCTCTGGTCACGCCCAGGTACTTTCACGAATCCCTCGACGCTGGACTGA
TACGTGTTGGTTAGAAAAATATCCGCTCCGTTGCGG
BO14992.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-PA | 996 | CG10623-RA | 238..993 | 774..19 | 3755 | 99.8 | Minus |
CG10623-PA | 996 | CG10623-RA | 178..239 | 835..774 | 285 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 1725 | CG10623-RC | 444..1259 | 835..19 | 4030 | 99.6 | Minus |
CG10623-RB | 1494 | CG10623-RB | 213..1028 | 835..19 | 4030 | 99.6 | Minus |
CG10623-RA | 1583 | CG10623-RA | 302..1117 | 835..19 | 4030 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18956430..18956868 | 396..835 | 2135 | 99.5 | Plus |
2L | 23513712 | 2L | 18955947..18956325 | 19..397 | 1880 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:02:38 has no hits.
BO14992.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:14 Download gff for
BO14992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-PA | 177..996 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:54 Download gff for
BO14992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-PA | 177..996 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:48:36 Download gff for
BO14992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 301..1120 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:06 Download gff for
BO14992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 301..1120 | 15..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:06 Download gff for
BO14992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18955944..18956324 | 15..396 | 99 | <- | Plus |
2L | 18956431..18956868 | 397..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:48:36 Download gff for
BO14992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18956431..18956868 | 397..836 | 99 | | Plus |
arm_2L | 18955944..18956324 | 15..396 | 99 | <- | Plus |
BO14992.5prime Sequence
854 bp (800 high quality bases) assembled on 2006-05-29
> BO14992.5prime
GAAGTTATCAGTCGACATGGAAGTGAATCAAAAATGGAACTGGGACACCA
AGCCAATTCTGGTCAAATGCGGAGGATTCTCCTCGCAATTGGCCAAGAAT
GTCACCGAAAAAGTGGACGGTGATCCACTGTGGGGATCGCGATTCGATGC
CACCAATCCGGAAGCTGTGATCCAAACACATCTGGACTTTCTCCGCAACG
GAGCGGATATTATTCTAACCAACACGTATCAGTCCAGCGTCGAGGGATTC
GTGAAGTACCTGGGCGTGACCAGAGAACGAGGTGTGGAGTTGATCCAAAA
GAGCGTTCAACTGGCCAAGCAGGCAAAGGAACAGTACCTTAGCGAAATCG
GTTCTGAAGCGGAGTCGGCTCTTCCACTGATCATGGGCTCAATAGGTCCA
TATGGCGCCTATCTCCACGATGGATCTGAGTACACCGGCAACTATGCGGA
CAAGATGTCCAAGGAGGAGCTGAGGGCGTGGCACAAGACAAGAATTGAGA
TTTGTCTCGCAGCTGGAGTGGATGGATTGGCCCTGGAAACACTTCCATGT
CTGATGGAGGCAGAGGCAGTCACCGAATTAGTACTGGACAACTTTCCGGA
TGCCAAATTCTGGGTCTCCCTGCAGTGCATGGATGAAAAGCACATGGCTA
GTGGAGAAAACTTCGCGGAGGCGGCTCTCTCCCTCTGGCGGTTGGTCCAA
AGTCGGAAGGCTGAAAACCGGCTCCTTGGGATCGGTCTGAACTGTGTAAA
CCCACTATTCGTGACCCCTTTGCTATCATCGCTTACCAAAGTGGCCGGTT
CGGATCGCATCCCATCGGTGGTCTACAGCAATCGCGGCAAGATCTACGAC
GTCG
BO14992.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-PA | 996 | CG10623-RA | 1..838 | 17..854 | 4065 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 1725 | CG10623-RC | 264..1104 | 14..854 | 4130 | 99.4 | Plus |
CG10623-RB | 1494 | CG10623-RB | 33..873 | 14..854 | 4130 | 99.4 | Plus |
CG10623-RA | 1583 | CG10623-RA | 122..962 | 14..854 | 4130 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18956430..18957048 | 632..14 | 3080 | 99.8 | Minus |
2L | 23513712 | 2L | 18956102..18956325 | 854..631 | 1060 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:02:13 has no hits.
BO14992.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:15 Download gff for
BO14992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:55 Download gff for
BO14992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:09 Download gff for
BO14992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 122..962 | 14..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:16:59 Download gff for
BO14992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 122..962 | 14..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:16:59 Download gff for
BO14992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18956102..18956324 | 632..854 | 98 | <- | Minus |
2L | 18956431..18957048 | 14..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:09 Download gff for
BO14992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18956102..18956324 | 632..854 | 98 | <- | Minus |
arm_2L | 18956431..18957048 | 14..631 | 99 | | Minus |
BO14992.complete Sequence
1027 bp (1027 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633319
> BO14992.complete
GAAGTTATCAGTCGACATGGAAGTGAATCAAAAATGGAACTGGGACACCA
AGCCAATTCTGGTCAAATGCGGAGGATTCTCCTCGCAATTGGCCAAGAAT
GTCACCGAAAAAGTGGACGGTGATCCACTGTGGGGATCGCGATTCGATGC
CACCAATCCGGAAGCTGTGATCCAAACACATCTGGACTTTCTCCGCAACG
GAGCGGATATTATTCTAACCAACACGTATCAGTCCAGCGTCGAGGGATTC
GTGAAGTACCTGGGCGTGACCAGAGAACGAGGTGTGGAGTTGATCCAAAA
GAGCGTTCAACTGGCCAAGCAGGCAAAGGAACAGTACCTTAGCGAAATCG
GTTCTGAAGCGGAGTCGGCTCTTCCACTGATCATGGGCTCAATAGGTCCA
TATGGCGCCTATCTCCACGATGGATCTGAGTACACCGGCAACTATGCGGA
CAAGATGTCCAAGGAGGAGCTGAGGGCGTGGCACAAGACAAGAATTGAGA
TTTGTCTCGCAGCTGGAGTGGATGGATTGGCCCTGGAAACACTTCCATGT
CTGATGGAGGCAGAGGCAGTCACCGAATTAGTACTGGACAACTTTCCGGA
TGCCAAATTCTGGGTCTCCCTGCAGTGCATGGATGAAAAGCACATGGCTA
GTGGAGAAAACTTCGCGGAGGCGGCTCTCTCCCTCTGGCGGTTGGTCCAA
AGTCGGAAGGCTGAAAACCGGCTCCTTGGGATCGGTCTGAACTGTGTAAA
CCCACTATTCGTGACCCCTTTGCTATCATCGCTTACCAAAGTGGCCGGTT
CGGATCGCATCCCACTGGTGGTCTACAGCAATCGCGGCGAGATCTACGAC
GTCGAGCAGGGAGATTGGACTGGAACCGGCGAGGAGGTGGTCAAGTTTGT
GCCCGAGTGGATCCAGCTGGGAGTGCGCATCGTTGGCGGCTGTTGCCGGG
TCTATCCGACGGACGTGTTGGCGATCCGCAAGTACGTCGATGGCCTCAAC
ATAAAGCCGGCAAGCTTTCTAGACCAT
BO14992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 996 | CG10623-PC | 1..993 | 17..1009 | 4935 | 99.8 | Plus |
CG10623-RB | 996 | CG10623-PB | 1..993 | 17..1009 | 4935 | 99.8 | Plus |
CG10623-RA | 996 | CG10623-PA | 1..993 | 17..1009 | 4935 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 1725 | CG10623-RC | 264..1259 | 14..1009 | 4950 | 99.8 | Plus |
CG10623-RB | 1494 | CG10623-RB | 33..1028 | 14..1009 | 4950 | 99.8 | Plus |
CG10623-RA | 1583 | CG10623-RA | 122..1117 | 14..1009 | 4950 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18956430..18957048 | 632..14 | 3080 | 99.8 | Minus |
2L | 23513712 | 2L | 18955947..18956325 | 1009..631 | 1880 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:49:12 has no hits.
BO14992.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:43 Download gff for
BO14992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 1..996 | 17..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:13 Download gff for
BO14992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 122..1120 | 14..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:35 Download gff for
BO14992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 125..1117 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:43 Download gff for
BO14992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 116..1114 | 14..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:21 Download gff for
BO14992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 125..1117 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:21 Download gff for
BO14992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18955945..18956324 | 632..1011 | 99 | <- | Minus |
2L | 18956431..18957045 | 17..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:35 Download gff for
BO14992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18955945..18956324 | 632..1011 | 99 | <- | Minus |
arm_2L | 18956431..18957045 | 17..631 | 99 | | Minus |
BO14992.pep Sequence
Translation from 16 to 1027
> BO14992.pep
MEVNQKWNWDTKPILVKCGGFSSQLAKNVTEKVDGDPLWGSRFDATNPEA
VIQTHLDFLRNGADIILTNTYQSSVEGFVKYLGVTRERGVELIQKSVQLA
KQAKEQYLSEIGSEAESALPLIMGSIGPYGAYLHDGSEYTGNYADKMSKE
ELRAWHKTRIEICLAAGVDGLALETLPCLMEAEAVTELVLDNFPDAKFWV
SLQCMDEKHMASGENFAEAALSLWRLVQSRKAENRLLGIGLNCVNPLFVT
PLLSSLTKVAGSDRIPLVVYSNRGEIYDVEQGDWTGTGEEVVKFVPEWIQ
LGVRIVGGCCRVYPTDVLAIRKYVDGLNIKPASFLDH
BO14992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-PC | 331 | CG10623-PC | 1..331 | 1..331 | 1733 | 100 | Plus |
CG10623-PB | 331 | CG10623-PB | 1..331 | 1..331 | 1733 | 100 | Plus |
CG10623-PA | 331 | CG10623-PA | 1..331 | 1..331 | 1733 | 100 | Plus |
CG10621-PC | 331 | CG10621-PC | 6..325 | 14..328 | 915 | 53.7 | Plus |
CG10621-PB | 331 | CG10621-PB | 6..325 | 14..328 | 915 | 53.7 | Plus |