Clone BO14993 Report

Search the DGRC for BO14993

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG14550-RA
Protein status:BO14993.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO14993.5prime Sequence

506 bp (505 high quality bases) assembled on 2006-05-29

> BO14993.5prime
GAAGTTATCAGTCGACATGCCGGAACACACTCCAGCTCCGACTCCCCATA
GGGCGGTCTATGGTTTCGCCTTCTATATGCTGTTCACGGTCCTCTTCCTC
GTATACGTGACTTGGGCGCTGCTGCCAGTGGAGTTTGGTCTGCACTCGTA
TCTGCCGGACAAGTATTTTGCCGTATTTGTGCCTTTTCTGGTGCTGGTCT
TCGCCTGGTTCTTTGCCTTCCTCATCTATCCTGCCATAAATCTATCGATG
ACAGTGGATGTTGATTCCATTGCCTCGGTGGTGGATCCAAAGCTGGCACT
GCCCAAGGGGACAGAGTTCACCTCCTGGTCGCAGTTGCAAAAAGGCAAGG
TCAGCCAGGATTCCGCATCAAAGAAGGCCTCTCCAGTGAACTGCAACCTG
TGCAGGACTTTCCACCAACCTGTGACACGTGCACCTATTCCACCACTGCG
TTTTCTGGACCTCCAGGAAGTAAATACAGCGTATTATAACGCAAGCTTTC
TAGACC

BO14993.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14550-PA 477 CG14550-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42498-RA 814 CG42498-RA 338..811 17..490 2370 100 Plus
CG14550-RA 814 CG14550-RA 338..811 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26057350..26057823 490..17 2370 100 Minus
Blast to na_te.dros performed on 2015-02-02 08:02:02 has no hits.

BO14993.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:17 Download gff for BO14993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14550-PA 1..477 17..494 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:58 Download gff for BO14993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14550-PA 1..477 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:08 Download gff for BO14993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42498-RA 330..814 9..494 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:16:57 Download gff for BO14993.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14550-RA 330..814 9..494 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:16:57 Download gff for BO14993.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26057346..26057831 9..494 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:08 Download gff for BO14993.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21883068..21883553 9..494 98   Minus

BO14993.3prime Sequence

506 bp (505 high quality bases) assembled on 2006-05-29

> BO14993.3prime
ATGGTCTAGAAAGCTTGCGTTATAATACGCTGTATTTACTTCCTGGAGGT
CCAGAAAACGCAGTGGTGGAATAGGTGCACGTGTCACAGGTTGGTGGAAA
GTCCTGCACAGGTTGCAGTTCACTGGAGAGGCCTTCTTTGATGCGGAATC
CTGGCTGACCTTGCCTTTTTGCAACTGCGACCAGGAGGTGAACTCTGTCC
CCTTGGGCAGTGCCAGCTTTGGATCCACCACCGAGGCAATGGAATCAACA
TCCACTGTCATCGATAGATTTATGGCAGGATAGATGAGGAAGGCAAAGAA
CCAGGCGAAGACCAGCACCAGAAAAGGCACAAATACGGCAAAATACTTGT
CCGGCAGATACGAGTGCAGACCAAACTCCACTGGCAGCAGCGCCCAAGTC
ACGTATACGAGGAAGAGGACCGTGAACAGCATATAGAAGGCGAAACCATA
GACCGCCCTATGGGGAGTCGGAGCTGGAGTGTGTTCCGGCATGTCGACTG
ATAACT

BO14993.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14550-PA 477 CG14550-RA 1..474 492..19 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42498-RA 814 CG42498-RA 338..811 492..19 2370 100 Minus
CG14550-RA 814 CG14550-RA 338..811 492..19 2370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26057350..26057823 19..492 2370 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:17:50 has no hits.

BO14993.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:16 Download gff for BO14993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14550-PA 1..477 15..492 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:40:56 Download gff for BO14993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14550-PA 1..477 15..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:35 Download gff for BO14993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42498-RA 330..814 15..500 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:54:04 Download gff for BO14993.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14550-RA 330..814 15..500 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:54:04 Download gff for BO14993.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26057346..26057831 15..500 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:35 Download gff for BO14993.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21883068..21883553 15..500 98   Plus

BO14993.complete Sequence

508 bp (508 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633320

> BO14993.complete
GAAGTTATCAGTCGACATGCCGGAACACACTCCAGCTCCGACTCCCCATA
GGGCGGTCTATGGTTTCGCCTTCTATATGCTGTTCACGGTCCTCTTCCTC
GTATACGTGACTTGGGCGCTGCTGCCAGTGGAGTTTGGTCTGCACTCGTA
TCTGCCGGACAAGTATTTTGCCGTATTTGTGCCTTTTCTGGTGCTGGTCT
TCGCCTGGTTCTTTGCCTTCCTCATCTATCCTGCCATAAATCTATCGATG
ACAGTGGATGTTGATTCCATTGCCTCGGTGGTGGATCCAAAGCTGGCACT
GCCCAAGGGGACAGAGTTCACCTCCTGGTCGCAGTTGCAAAAAGGCAAGG
TCAGCCAGGATTCCGCATCAAAGAAGGCCTCTCCAGTGAACTGCAACCTG
TGCAGGACTTTCCACCAACCTGTGACACGTGCACCTATTCCACCACTGCG
TTTTCTGGACCTCCAGGAAGTAAATACAGCGTATTATAACGCAAGCTTTC
TAGACCAT

BO14993.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14550-RA 477 CG14550-PA 1..474 17..490 2370 100 Plus
CG42498-RA 336 CG42498-PA 302..336 17..51 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG42498-RA 814 CG42498-RA 338..811 17..490 2370 100 Plus
CG14550-RA 814 CG14550-RA 338..811 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26057350..26057823 490..17 2370 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:48:21 has no hits.

BO14993.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:44 Download gff for BO14993.complete
Subject Subject Range Query Range Percent Splice Strand
CG14550-RA 1..477 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:15 Download gff for BO14993.complete
Subject Subject Range Query Range Percent Splice Strand
CG14550-RA 330..814 9..494 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:39 Download gff for BO14993.complete
Subject Subject Range Query Range Percent Splice Strand
CG42498-RA 338..811 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:44 Download gff for BO14993.complete
Subject Subject Range Query Range Percent Splice Strand
CG14550-RA 330..814 9..494 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:10 Download gff for BO14993.complete
Subject Subject Range Query Range Percent Splice Strand
CG14550-RA 338..811 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:10 Download gff for BO14993.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26057348..26057823 17..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:39 Download gff for BO14993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21883070..21883545 17..492 99   Minus

BO14993.pep Sequence

Translation from 16 to 508

> BO14993.pep
MPEHTPAPTPHRAVYGFAFYMLFTVLFLVYVTWALLPVEFGLHSYLPDKY
FAVFVPFLVLVFAWFFAFLIYPAINLSMTVDVDSIASVVDPKLALPKGTE
FTSWSQLQKGKVSQDSASKKASPVNCNLCRTFHQPVTRAPIPPLRFLDLQ
EVNTAYYNASFLDH

BO14993.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14550-PA 158 CG14550-PA 1..158 1..158 841 100 Plus