Clone BO15002 Report

Search the DGRC for BO15002

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:150
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptdnk-RA
Protein status:BO15002.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO15002.3prime Sequence

782 bp (782 high quality bases) assembled on 2006-06-16

> BO15002.3prime
ATGGTCTAGAAAGCTTGCTCTGGCGACCCTCTGGCGCTTGCTGGGCGACA
CCAGAACCGGCGAGGGCTGTTGGTTACTTGAGATGGCGTCGAATATGCTG
CTCTCCGAGCGCTGGTACTCGGTGCCAATGTTTTCCAGGTTCAGATCGGC
ATCGAGGACTAGGACCTTGCACGACTGCGGTCGTCTCTGGTGTATCAACC
AGTCCTCGTGCAACTCATGCAGCTCCTGAAGGTACTTAAGCGGCACGCAG
CTCTCCTCAGAACGAGCCCGCTGCCGGATGCGTTCGTACGCCACCTCCGG
CGAGGTGCGCAGATATATGATGAGGTCCGCCTGCACGTGAATGGACTCTT
CGATGAACTTGTACCACTCCTCCAGCGTATTGTACATGCCCTGCTCCAGC
GAGCCGTTTCGTCGCATGTTCTCCACGAAGCAATAGCGAGCGCTAAAAAT
GGAGCGCTCCATTATTTTTAGCTTCTTGTTGGTTGGGGCGGTGTGCGACT
GCAGCATGGTCAGCGTGACATAACTCTGAAAGGGCATGGCCCACTTCTTG
GGATCTTTGTACATCAGCTCCAGCAGATTTACCCCGTTGACGTTGCGCCA
CTTCTCGACGGGCTCGGTCAGCAGGCAAATGTCGTTCTTGTACTTCTCGA
AGTGGTTCAAATACGTGGTCTTCCCGCTGCCGATGTTGCCCTCGATGAGG
ACGGTGAAGGGCTGGGTGCCCTCGGCGTACTTGGTCCCCTTTCGGGCACA
GGATGCTGCCTCCGCCATGTCGACTGATAACT

BO15002.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5452-PA 753 dnk-RA 1..750 768..19 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 1265 CG5452-RB 221..970 768..19 3750 100 Minus
dnk-RA 1123 CG5452-RA 149..898 768..19 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18981572..18981903 768..437 1660 100 Minus
3R 32079331 3R 18981979..18982252 437..164 1370 100 Minus
3R 32079331 3R 18982306..18982454 167..19 745 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:28:23 has no hits.

BO15002.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:20 Download gff for BO15002.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5452-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:00 Download gff for BO15002.3prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..906 10..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:40 Download gff for BO15002.3prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..906 10..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:40 Download gff for BO15002.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18981572..18981903 437..768 100 -> Minus
3R 18981980..18982250 166..436 100 -> Minus
3R 18982308..18982462 10..165 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:00 Download gff for BO15002.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14807294..14807625 437..768 100 -> Minus
arm_3R 14807702..14807972 166..436 100 -> Minus
arm_3R 14808030..14808184 10..165 97   Minus

BO15002.5prime Sequence

782 bp (749 high quality bases) assembled on 2006-06-16

> BO15002.5prime
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGAGCAAGCTTTCTAGACC

BO15002.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5452-PA 753 dnk-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 1265 CG5452-RB 221..970 17..766 3750 100 Plus
dnk-RA 1123 CG5452-RA 149..898 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18981572..18981903 17..348 1660 100 Plus
3R 32079331 3R 18981979..18982252 348..621 1370 100 Plus
3R 32079331 3R 18982306..18982454 618..766 745 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:06:46 has no hits.

BO15002.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:25 Download gff for BO15002.5prime
Subject Subject Range Query Range Percent Splice Strand
dnk-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:07 Download gff for BO15002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5452-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:57 Download gff for BO15002.5prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..906 17..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:22 Download gff for BO15002.5prime
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..906 17..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:22 Download gff for BO15002.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18982308..18982462 620..775 97   Plus
3R 18981572..18981903 17..348 100 -> Plus
3R 18981980..18982250 349..619 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:57 Download gff for BO15002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14807294..14807625 17..348 100 -> Plus
arm_3R 14807702..14807972 349..619 100 -> Plus
arm_3R 14808030..14808184 620..775 97   Plus

BO15002.complete Sequence

784 bp (784 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633323

> BO15002.complete
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGAGCAAGCTTTCTAGACCAT

BO15002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 753 CG5452-PB 1..750 17..766 3750 100 Plus
dnk-RA 753 CG5452-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-RB 1265 CG5452-RB 221..970 17..766 3750 100 Plus
dnk-RA 1123 CG5452-RA 149..898 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18981572..18981903 17..348 1660 100 Plus
3R 32079331 3R 18981979..18982252 348..621 1370 100 Plus
3R 32079331 3R 18982306..18982454 618..766 745 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:30:48 has no hits.

BO15002.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:47 Download gff for BO15002.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:19 Download gff for BO15002.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 172..929 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:17 Download gff for BO15002.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..898 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:48 Download gff for BO15002.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 172..929 17..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:10 Download gff for BO15002.complete
Subject Subject Range Query Range Percent Splice Strand
dnk-RA 149..898 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:10 Download gff for BO15002.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18981572..18981903 17..348 100 -> Plus
3R 18981980..18982250 349..619 100 -> Plus
3R 18982308..18982454 620..768 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:17 Download gff for BO15002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14807294..14807625 17..348 100 -> Plus
arm_3R 14807702..14807972 349..619 100 -> Plus
arm_3R 14808030..14808176 620..768 98   Plus

BO15002.pep Sequence

Translation from 16 to 784

> BO15002.pep
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL
TEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKL
KIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLI
IYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSC
KVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
ASFLDH

BO15002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
dnk-PB 250 CG5452-PB 1..250 1..250 1308 100 Plus
dnk-PA 250 CG5452-PA 1..250 1..250 1308 100 Plus