Clone Sequence Records
BO15002.3prime Sequence
782 bp (782 high quality bases) assembled on 2006-06-16
> BO15002.3prime
ATGGTCTAGAAAGCTTGCTCTGGCGACCCTCTGGCGCTTGCTGGGCGACA
CCAGAACCGGCGAGGGCTGTTGGTTACTTGAGATGGCGTCGAATATGCTG
CTCTCCGAGCGCTGGTACTCGGTGCCAATGTTTTCCAGGTTCAGATCGGC
ATCGAGGACTAGGACCTTGCACGACTGCGGTCGTCTCTGGTGTATCAACC
AGTCCTCGTGCAACTCATGCAGCTCCTGAAGGTACTTAAGCGGCACGCAG
CTCTCCTCAGAACGAGCCCGCTGCCGGATGCGTTCGTACGCCACCTCCGG
CGAGGTGCGCAGATATATGATGAGGTCCGCCTGCACGTGAATGGACTCTT
CGATGAACTTGTACCACTCCTCCAGCGTATTGTACATGCCCTGCTCCAGC
GAGCCGTTTCGTCGCATGTTCTCCACGAAGCAATAGCGAGCGCTAAAAAT
GGAGCGCTCCATTATTTTTAGCTTCTTGTTGGTTGGGGCGGTGTGCGACT
GCAGCATGGTCAGCGTGACATAACTCTGAAAGGGCATGGCCCACTTCTTG
GGATCTTTGTACATCAGCTCCAGCAGATTTACCCCGTTGACGTTGCGCCA
CTTCTCGACGGGCTCGGTCAGCAGGCAAATGTCGTTCTTGTACTTCTCGA
AGTGGTTCAAATACGTGGTCTTCCCGCTGCCGATGTTGCCCTCGATGAGG
ACGGTGAAGGGCTGGGTGCCCTCGGCGTACTTGGTCCCCTTTCGGGCACA
GGATGCTGCCTCCGCCATGTCGACTGATAACT
BO15002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5452-PA | 753 | dnk-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 1265 | CG5452-RB | 221..970 | 768..19 | 3750 | 100 | Minus |
dnk-RA | 1123 | CG5452-RA | 149..898 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18981572..18981903 | 768..437 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 18981979..18982252 | 437..164 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 18982306..18982454 | 167..19 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:28:23 has no hits.
BO15002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:20 Download gff for
BO15002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5452-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:00 Download gff for
BO15002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..906 | 10..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:40 Download gff for
BO15002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..906 | 10..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:40 Download gff for
BO15002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18981572..18981903 | 437..768 | 100 | -> | Minus |
3R | 18981980..18982250 | 166..436 | 100 | -> | Minus |
3R | 18982308..18982462 | 10..165 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:00 Download gff for
BO15002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14807294..14807625 | 437..768 | 100 | -> | Minus |
arm_3R | 14807702..14807972 | 166..436 | 100 | -> | Minus |
arm_3R | 14808030..14808184 | 10..165 | 97 | | Minus |
BO15002.5prime Sequence
782 bp (749 high quality bases) assembled on 2006-06-16
> BO15002.5prime
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGAGCAAGCTTTCTAGACC
BO15002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5452-PA | 753 | dnk-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 1265 | CG5452-RB | 221..970 | 17..766 | 3750 | 100 | Plus |
dnk-RA | 1123 | CG5452-RA | 149..898 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18981572..18981903 | 17..348 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 18981979..18982252 | 348..621 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 18982306..18982454 | 618..766 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:06:46 has no hits.
BO15002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:25 Download gff for
BO15002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:07 Download gff for
BO15002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5452-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:57 Download gff for
BO15002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..906 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:22 Download gff for
BO15002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..906 | 17..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:22 Download gff for
BO15002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18982308..18982462 | 620..775 | 97 | | Plus |
3R | 18981572..18981903 | 17..348 | 100 | -> | Plus |
3R | 18981980..18982250 | 349..619 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:57 Download gff for
BO15002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14807294..14807625 | 17..348 | 100 | -> | Plus |
arm_3R | 14807702..14807972 | 349..619 | 100 | -> | Plus |
arm_3R | 14808030..14808184 | 620..775 | 97 | | Plus |
BO15002.complete Sequence
784 bp (784 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633323
> BO15002.complete
GAAGTTATCAGTCGACATGGCGGAGGCAGCATCCTGTGCCCGAAAGGGGA
CCAAGTACGCCGAGGGCACCCAGCCCTTCACCGTCCTCATCGAGGGCAAC
ATCGGCAGCGGGAAGACCACGTATTTGAACCACTTCGAGAAGTACAAGAA
CGACATTTGCCTGCTGACCGAGCCCGTCGAGAAGTGGCGCAACGTCAACG
GGGTAAATCTGCTGGAGCTGATGTACAAAGATCCCAAGAAGTGGGCCATG
CCCTTTCAGAGTTATGTCACGCTGACCATGCTGCAGTCGCACACCGCCCC
AACCAACAAGAAGCTAAAAATAATGGAGCGCTCCATTTTTAGCGCTCGCT
ATTGCTTCGTGGAGAACATGCGACGAAACGGCTCGCTGGAGCAGGGCATG
TACAATACGCTGGAGGAGTGGTACAAGTTCATCGAAGAGTCCATTCACGT
GCAGGCGGACCTCATCATATATCTGCGCACCTCGCCGGAGGTGGCGTACG
AACGCATCCGGCAGCGGGCTCGTTCTGAGGAGAGCTGCGTGCCGCTTAAG
TACCTTCAGGAGCTGCATGAGTTGCACGAGGACTGGTTGATACACCAGAG
ACGACCGCAGTCGTGCAAGGTCCTAGTCCTCGATGCCGATCTGAACCTGG
AAAACATTGGCACCGAGTACCAGCGCTCGGAGAGCAGCATATTCGACGCC
ATCTCAAGTAACCAACAGCCCTCGCCGGTTCTGGTGTCGCCCAGCAAGCG
CCAGAGGGTCGCCAGAGCAAGCTTTCTAGACCAT
BO15002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 753 | CG5452-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
dnk-RA | 753 | CG5452-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-RB | 1265 | CG5452-RB | 221..970 | 17..766 | 3750 | 100 | Plus |
dnk-RA | 1123 | CG5452-RA | 149..898 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18981572..18981903 | 17..348 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 18981979..18982252 | 348..621 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 18982306..18982454 | 618..766 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:30:48 has no hits.
BO15002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:47 Download gff for
BO15002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:19 Download gff for
BO15002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 172..929 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:17 Download gff for
BO15002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..898 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:48 Download gff for
BO15002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 172..929 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:10 Download gff for
BO15002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dnk-RA | 149..898 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:10 Download gff for
BO15002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18981572..18981903 | 17..348 | 100 | -> | Plus |
3R | 18981980..18982250 | 349..619 | 100 | -> | Plus |
3R | 18982308..18982454 | 620..768 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:17 Download gff for
BO15002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14807294..14807625 | 17..348 | 100 | -> | Plus |
arm_3R | 14807702..14807972 | 349..619 | 100 | -> | Plus |
arm_3R | 14808030..14808176 | 620..768 | 98 | | Plus |
BO15002.pep Sequence
Translation from 16 to 784
> BO15002.pep
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL
TEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKL
KIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLI
IYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSC
KVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
ASFLDH
BO15002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dnk-PB | 250 | CG5452-PB | 1..250 | 1..250 | 1308 | 100 | Plus |
dnk-PA | 250 | CG5452-PA | 1..250 | 1..250 | 1308 | 100 | Plus |