Clone Sequence Records
BO15006.3prime Sequence
413 bp (413 high quality bases) assembled on 2006-06-16
> BO15006.3prime
ATGGTCTAGAAAGCTTGCTCTTGGTATATATTTATTTTGAATATTTAAAT
CTTTACCGTCATATGTTATGTCCTCATAAAAAAACTTTCGATTCGAGCGA
CATTGGGGACCACACCTGGTAGAGCCACAACTTCGGCAATTATACCAGCA
ACCATCACATTCTTGATTCATACAGTCGCATATGTCCAGACCGTTTGAGC
GAATATTTCCGTATTCATCATATGCGCTATTTTGACATTTCTTTCTGCCT
TTTTTTTTATTTTCGGAATCTAAATAATTTGAGTATTCGTTAGAAACTCC
TTTTTTTCTATGTCTCTGACGCAAATTGCGACTGATGGAATAATCTGAAT
CTAAATACGGCTTCATATCTTGGCGAGAATTTGTTATACTAAAGTGCATG
TCGACTGATAACT
BO15006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-PA | 384 | CG14464-RA | 1..381 | 399..19 | 1905 | 100 | Minus |
CG14464-PB | 267 | CG14464-RB | 1..42 | 221..180 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 1289 | CG14464-RD | 28..409 | 400..19 | 1910 | 100 | Minus |
CG14464-RC | 637 | CG14464-RC | 28..409 | 400..19 | 1910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4829273..4829494 | 400..179 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 4829547..4829707 | 179..19 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:05:51 has no hits.
BO15006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:21 Download gff for
BO15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-PA | 1..384 | 15..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:25:20 Download gff for
BO15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 11..406 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:22 Download gff for
BO15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 11..406 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:22 Download gff for
BO15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4829269..4829493 | 180..406 | 98 | -> | Minus |
2R | 4829547..4829714 | 11..179 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:25:20 Download gff for
BO15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 716774..716998 | 180..406 | 98 | -> | Minus |
arm_2R | 717052..717219 | 11..179 | 98 | | Minus |
BO15006.5prime Sequence
413 bp (413 high quality bases) assembled on 2006-06-16
> BO15006.5prime
GAAGTTATCAGTCGACATGCACTTTAGTATAACAAATTCTCGCCAAGATA
TGAAGCCGTATTTAGATTCAGATTATTCCATCAGTCGCAATTTGCGTCAG
AGACATAGAAAAAAAGGAGTTTCTAACGAATACTCAAATTATTTAGATTC
CGAAAATAAAAAAAAAGGCAGAAAGAAATGTCAAAATAGCGCATATGATG
AATACGGAAATATTCGCTCAAACGGTCTGGACATATGCGACTGTATGAAT
CAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAG
GTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAA
CATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAGAGCA
AGCTTTCTAGACC
BO15006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-PA | 384 | CG14464-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
CG14464-PB | 267 | CG14464-RB | 1..42 | 195..236 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 1289 | CG14464-RD | 28..409 | 16..397 | 1910 | 100 | Plus |
CG14464-RC | 637 | CG14464-RC | 28..409 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4829273..4829494 | 16..237 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 4829547..4829707 | 237..397 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:03:22 has no hits.
BO15006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:23 Download gff for
BO15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-PA | 1..384 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:12 Download gff for
BO15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 10..405 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:45 Download gff for
BO15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 10..405 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:45 Download gff for
BO15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4829269..4829493 | 10..236 | 98 | -> | Plus |
2R | 4829547..4829714 | 237..405 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:12 Download gff for
BO15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 716774..716998 | 10..236 | 98 | -> | Plus |
arm_2R | 717052..717219 | 237..405 | 98 | | Plus |
BO15006.complete Sequence
415 bp (415 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633324
> BO15006.complete
GAAGTTATCAGTCGACATGCACTTTAGTATAACAAATTCTCGCCAAGATA
TGAAGCCGTATTTAGATTCAGATTATTCCATCAGTCGCAATTTGCGTCAG
AGACATAGAAAAAAAGGAGTTTCTAACGAATACTCAAATTATTTAGATTC
CGAAAATAAAAAAAAAGGCAGAAAGAAATGTCAAAATAGCGCATATGATG
AATACGGAAATATTCGCTCAAACGGTCTGGACATATGCGACTGTATGAAT
CAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAG
GTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAA
CATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAGAGCA
AGCTTTCTAGACCAT
BO15006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 351 | CG14464-PD | 1..348 | 50..397 | 1740 | 100 | Plus |
CG14464-RC | 351 | CG14464-PC | 1..348 | 50..397 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 1289 | CG14464-RD | 28..409 | 16..397 | 1910 | 100 | Plus |
CG14464-RC | 637 | CG14464-RC | 28..409 | 16..397 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4829273..4829494 | 16..237 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 4829547..4829707 | 237..397 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:50:00 has no hits.
BO15006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:13 Download gff for
BO15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 1..351 | 50..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:49 Download gff for
BO15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 50..442 | 10..405 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:52 Download gff for
BO15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 29..409 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:13 Download gff for
BO15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 50..442 | 10..405 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:27 Download gff for
BO15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 29..409 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:27 Download gff for
BO15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4829274..4829493 | 17..236 | 100 | -> | Plus |
2R | 4829547..4829707 | 237..399 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:52 Download gff for
BO15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 716779..716998 | 17..236 | 100 | -> | Plus |
arm_2R | 717052..717212 | 237..399 | 98 | | Plus |
BO15006.pep Sequence
Translation from 16 to 415
> BO15006.pep
MHFSITNSRQDMKPYLDSDYSISRNLRQRHRKKGVSNEYSNYLDSENKKK
GRKKCQNSAYDEYGNIRSNGLDICDCMNQECDGCWYNCRSCGSTRCGPQC
RSNRKFFYEDITYDGKDLNIQNKYIPRASFLDH
BO15006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-PD | 116 | CG14464-PD | 1..116 | 12..127 | 659 | 100 | Plus |
CG14464-PC | 116 | CG14464-PC | 1..116 | 12..127 | 659 | 100 | Plus |