Clone Sequence Records
BO15007.3prime Sequence
789 bp (776 high quality bases) assembled on 2006-05-29
> BO15007.3prime
ATGGTCTAGAAAGCTTGCCAACGAGAAGTACTTAAGAAACTGGGCGGGCG
GAACTGGTTGGGCCAGAGCCAACTGACCACCGGCCTCCTCAAGCCGCTGC
TTGTAGTCCGGACTCTGATCGACGATGCACGGGTGTCCATCCGACGGCCA
GAACAGGCAGCAGCAGGAGCGGCACAGGGCCAGCACCTCGGCGAACTGGT
AATCATCGTTGACGCCATAGGTGCGTCGTAGTTGATGATAGATCTGCTTC
CAGTCCTTGATCTCGCCCATCTGCTTAAACTTGTCCAGGTCCAGAATGGT
GTGGATCTGGCGCTGGTTGAAGTGAAAGCGTGTCAGTTCGCGCCAGATGC
GCTGCTCGGATACCAGCTTGGCCATGGTCTCCCAGGCCTCGGCGGCCGAC
TCCAGGTCCCGATGGTCGGCTATGCACAGGATGATCTCCCGCACACACTC
CTCCGGCAGTTCGTGCAGCTTTGGCTTGGCCTCCGGATCGGGCTCGCGGA
TTTCGATCTGGCTGGCCACGCGCTGGATGCGCTTGATGGTGGCCATGTGC
TCCTTCCACAGGTACGTGCTGCCCAGCGGCTTGCCCCAGCACTTCTGGTT
CTCTTGGCTGACAATGTGCTCCAGCTTCAGGGCCAGGCCGCGCAGCACAT
TCGGATGCTGCTGGCTGTCATTTACATGCGAGGCCACCTCCTCGACCATT
TGGAGTAGCTGGCGCTGAGCACTGCCTGGCAGACTGGCAATACCCTTGTT
GGACACGAGCAGCAGGAAGGCGCATATGTAGTGGAACCG
BO15007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-PA | 1056 | CG11658-RA | 283..1053 | 789..19 | 3855 | 100 | Minus |
| CG11658-PB | 1056 | CG11658-RB | 283..1053 | 789..19 | 3855 | 100 | Minus |
| CG11658-PC | 1056 | CG11658-RC | 283..1053 | 789..19 | 3855 | 100 | Minus |
| CG11658-PD | 1056 | CG11658-RD | 283..1053 | 789..19 | 3855 | 100 | Minus |
| CG11658-PE | 1056 | CG11658-RE | 283..1053 | 789..19 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-RE | 2056 | CG11658-RE | 677..1447 | 789..19 | 3855 | 100 | Minus |
| CG11658-RD | 2068 | CG11658-RD | 689..1459 | 789..19 | 3855 | 100 | Minus |
| CG11658-RC | 2563 | CG11658-RC | 589..1359 | 789..19 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11700700..11701175 | 19..494 | 2380 | 100 | Plus |
| 3L | 28110227 | 3L | 11701238..11701420 | 493..675 | 915 | 100 | Plus |
| 3L | 28110227 | 3L | 11701482..11701596 | 675..789 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:53:44 has no hits.
BO15007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:27 Download gff for
BO15007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-PC | 283..1056 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:08 Download gff for
BO15007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-PE | 283..1056 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:20 Download gff for
BO15007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 589..1364 | 13..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:57 Download gff for
BO15007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 589..1364 | 13..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:57 Download gff for
BO15007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11700695..11701173 | 13..492 | 99 | <- | Plus |
| 3L | 11701238..11701419 | 493..674 | 100 | <- | Plus |
| 3L | 11701482..11701596 | 675..789 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:20 Download gff for
BO15007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11693795..11694273 | 13..492 | 99 | <- | Plus |
| arm_3L | 11694338..11694519 | 493..674 | 100 | <- | Plus |
| arm_3L | 11694582..11694696 | 675..789 | 100 | | Plus |
BO15007.5prime Sequence
773 bp (680 high quality bases) assembled on 2006-06-16
> BO15007.5prime
GAAGTTATCAGTCGACATGGCGTTCATTTCGAAAGACTTTCGGTCGCCGG
GGGAAACTTGGATCAAAACCGATGGCGGCTGGGAGCGTTCCAAGGTGCTC
GAGTGCGGCGGAAAGCGGAAGCGGCACCATTCAGAGGGCAGCAGCAGCTA
CCAGGACAGCGACAGTTCGGAGGAGGAGGCGGTGATGCCGCCGCATTATC
ACATCACCATCCGGTGTACCAGAGAGATAGCCGGGTTTAATGGTCTCAGT
GAGGCTGTGAAGCGTCTGGATTTCAGGCGATCTGTGCGGGATCGCAAGCG
GTTCCACTACATATGCGCCTTCCTGCTGCTCGTGTCCAACAAGGGTATTG
CCAGTCTGCCAGGCAGTGCTCAGCGCCAGCTACTCCAAATGGTCGAGGAG
GTGGCCTCGCATGTAAATGACAGCCAGCAGCATCCGAATGTGCTGCGCGG
CCTGGCCCTGAAGCTGGAGCACATTGTCAGCCAAGAGAACCAGAAGTGCT
GGGGCAAGCCGCTGGGCAGCACGTACCTGTGGAAGGAGCACATGGCCACC
ATCAAGCGCATCCAGCGCGTGGCCAGCCAGATCGAAATCCGCGAGCCCGA
TCCGGAGGCCAAGCCAAAGCTGCACGAACTGCCGGAGGAGTGTGTGCGGG
AGATCATCCTGTGCATAGCCGACCATCGGGACCTGGAGTCGGCCGCCGAG
GCCTGGGAGACCATGGCCAAGCTGGTATCCGAGCAGCGCATCTGGCGCGA
ACTGACACGCTTTCACTTCACCC
BO15007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-PA | 1056 | CG11658-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
| CG11658-PB | 1056 | CG11658-RB | 1..754 | 17..770 | 3770 | 100 | Plus |
| CG11658-PC | 1056 | CG11658-RC | 1..754 | 17..770 | 3770 | 100 | Plus |
| CG11658-PD | 1056 | CG11658-RD | 1..754 | 17..770 | 3770 | 100 | Plus |
| CG11658-PE | 1056 | CG11658-RE | 1..754 | 17..770 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-RE | 2056 | CG11658-RE | 395..1148 | 17..770 | 3770 | 100 | Plus |
| CG11658-RD | 2068 | CG11658-RD | 407..1160 | 17..770 | 3770 | 100 | Plus |
| CG11658-RC | 2563 | CG11658-RC | 307..1060 | 17..770 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11701482..11701772 | 413..123 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 11701238..11701420 | 595..413 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 11700999..11701175 | 770..594 | 885 | 100 | Minus |
| 3L | 28110227 | 3L | 11707304..11707411 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:58:24 has no hits.
BO15007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:28 Download gff for
BO15007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-PC | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:10 Download gff for
BO15007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-PE | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:32 Download gff for
BO15007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1063 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:06 Download gff for
BO15007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1063 | 17..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:06 Download gff for
BO15007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11700996..11701173 | 596..773 | 99 | <- | Minus |
| 3L | 11701238..11701419 | 414..595 | 100 | <- | Minus |
| 3L | 11701482..11701771 | 124..413 | 100 | <- | Minus |
| 3L | 11707305..11707411 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:32 Download gff for
BO15007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11694096..11694273 | 596..773 | 99 | <- | Minus |
| arm_3L | 11694338..11694519 | 414..595 | 100 | <- | Minus |
| arm_3L | 11694582..11694871 | 124..413 | 100 | <- | Minus |
| arm_3L | 11700405..11700511 | 17..123 | 100 | | Minus |
BO15007.complete Sequence
1087 bp (1087 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633325
> BO15007.complete
GAAGTTATCAGTCGACATGGCGTTCATTTCGAAAGACTTTCGGTCGCCGG
GGGAAACTTGGATCAAAACCGATGGCGGCTGGGAGCGTTCCAAGGTGCTC
GAGTGCGGCGGAAAGCGGAAGCGGCACCATTCAGAGGGCAGCAGCAGCTA
CCAGGACAGCGACAGTTCGGAGGAGGAGGCGGTGATGCCGCCGCATTATC
ACATCACCATCCGGTGTACCAGAGAGATAGCCGGGTTTAATGGTCTCAGT
GAGGCTGTGAAGCGTCTGGATTTCAGGCGATCTGTGCGGGATCGCAAGCG
GTTCCACTACATATGCGCCTTCCTGCTGCTCGTGTCCAACAAGGGTATTG
CCAGTCTGCCAGGCAGTGCTCAGCGCCAGCTACTCCAAATGGTCGAGGAG
GTGGCCTCGCATGTAAATGACAGCCAGCAGCATCCGAATGTGCTGCGCGG
CCTGGCCCTGAAGCTGGAGCACATTGTCAGCCAAGAGAACCAGAAGTGCT
GGGGCAAGCCGCTGGGCAGCACGTACCTGTGGAAGGAGCACATGGCCACC
ATCAAGCGCATCCAGCGCGTGGCCAGCCAGATCGAAATCCGCGAGCCCGA
TCCGGAGGCCAAGCCAAAGCTGCACGAACTGCCGGAGGAGTGTGTGCGGG
AGATCATCCTGTGCATAGCCGACCATCGGGACCTGGAGTCGGCCGCCGAG
GCCTGGGAGACCATGGCCAAGCTGGTATCCGAGCAGCGCATCTGGCGCGA
ACTGACACGCTTTCACTTCAACCAGCGCCAGATCCACACCATTCTGGACC
TGGACAAGTTTAAGCAGATGGGCGAGATCAAGGACTGGAAGCAGATCTAT
CATCAACTACGACGCACCTATGGCGTCAACGATGATTACCAGTTCGCCGA
GGTGCTGGCCCTGTGCCGCTCCTGCTGCTGCCTGTTCTGGCCGTCGGATG
GACACCCGTGCATCGTCGATCAGAGTCCGGACTACAAGCAGCGGCTTGAG
GAGGCCGGTGGTCAGTTGGCTCTGGCCCAACCAGTTCCGCCCGCCCAGTT
TCTTAAGTACTTCTCGTTGGCAAGCTTTCTAGACCAT
BO15007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-RE | 1056 | CG11658-PE | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| CG11658-RD | 1056 | CG11658-PD | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| CG11658-RC | 1056 | CG11658-PC | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-RE | 2056 | CG11658-RE | 395..1447 | 17..1069 | 5265 | 100 | Plus |
| CG11658-RD | 2068 | CG11658-RD | 407..1459 | 17..1069 | 5265 | 100 | Plus |
| CG11658-RC | 2563 | CG11658-RC | 307..1359 | 17..1069 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11700700..11701175 | 1069..594 | 2380 | 100 | Minus |
| 3L | 28110227 | 3L | 11701482..11701772 | 413..123 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 11701238..11701420 | 595..413 | 915 | 100 | Minus |
| 3L | 28110227 | 3L | 11707304..11707411 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:41:01 has no hits.
BO15007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:49 Download gff for
BO15007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 1..1056 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:21 Download gff for
BO15007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 317..1374 | 17..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:35 Download gff for
BO15007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1359 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:49 Download gff for
BO15007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 317..1374 | 17..1075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:31 Download gff for
BO15007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11658-RC | 307..1359 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:31 Download gff for
BO15007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11700698..11701173 | 596..1071 | 99 | <- | Minus |
| 3L | 11701238..11701419 | 414..595 | 100 | <- | Minus |
| 3L | 11701482..11701771 | 124..413 | 100 | <- | Minus |
| 3L | 11707305..11707411 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:35 Download gff for
BO15007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11693798..11694273 | 596..1071 | 99 | <- | Minus |
| arm_3L | 11694338..11694519 | 414..595 | 100 | <- | Minus |
| arm_3L | 11694582..11694871 | 124..413 | 100 | <- | Minus |
| arm_3L | 11700405..11700511 | 17..123 | 100 | | Minus |
BO15007.pep Sequence
Translation from 16 to 1087
> BO15007.pep
MAFISKDFRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDS
SEEEAVMPPHYHITIRCTREIAGFNGLSEAVKRLDFRRSVRDRKRFHYIC
AFLLLVSNKGIASLPGSAQRQLLQMVEEVASHVNDSQQHPNVLRGLALKL
EHIVSQENQKCWGKPLGSTYLWKEHMATIKRIQRVASQIEIREPDPEAKP
KLHELPEECVREIILCIADHRDLESAAEAWETMAKLVSEQRIWRELTRFH
FNQRQIHTILDLDKFKQMGEIKDWKQIYHQLRRTYGVNDDYQFAEVLALC
RSCCCLFWPSDGHPCIVDQSPDYKQRLEEAGGQLALAQPVPPAQFLKYFS
LASFLDH
BO15007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11658-PE | 351 | CG11658-PE | 1..351 | 1..351 | 1879 | 100 | Plus |
| CG11658-PD | 351 | CG11658-PD | 1..351 | 1..351 | 1879 | 100 | Plus |
| CG11658-PC | 351 | CG11658-PC | 1..351 | 1..351 | 1879 | 100 | Plus |
| CG11658-PB | 351 | CG11658-PB | 1..351 | 1..351 | 1879 | 100 | Plus |
| CG11658-PA | 351 | CG11658-PA | 1..351 | 1..351 | 1879 | 100 | Plus |
