Clone Sequence Records
BO15012.3prime Sequence
365 bp (365 high quality bases) assembled on 2006-06-16
> BO15012.3prime
ATGGTCTAGAAAGCTTGCGGCATTGGAGGCGTTATTCGCTCCATCCTGAA
TGTGGAGGCGACCAGTGAGGAGAGTAGCAGTAGTCCTTTGATCTCCCAGT
TCATCTCCGCAGTCCATGGGCACATCGGAATCCTCCTCATCCACATTGAT
GTATCCACTTCGCGGAGCCTTCCTGCTCTTTAGGCAATCCCAGGAATTCC
GACAGCGACTACGTGACATGGCGTAGACCAGTGCAGCCAGAACGAAAATG
CCAACGAGCACGGAAATTGGCAGCCATATGTATTGACCGTCGTCCGGATG
CAGTATGTCCGGTTCAGGACTAATGGTCGTCTGAGGCTCAAGTAACTTCA
TGTCGACTGATAACT
BO15012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-PA | 336 | CG5039-RA | 1..333 | 351..19 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 719 | CG5039-RA | 95..427 | 351..19 | 1665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25678968..25679159 | 233..42 | 945 | 99.5 | Minus |
3R | 32079331 | 3R | 25678777..25678901 | 351..227 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:11:24 has no hits.
BO15012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:30 Download gff for
BO15012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 18..351 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:12 Download gff for
BO15012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 18..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:50:04 Download gff for
BO15012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..427 | 19..351 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:53:20 Download gff for
BO15012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..427 | 19..351 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:53:20 Download gff for
BO15012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25678777..25678899 | 229..351 | 100 | -> | Minus |
3R | 25678973..25679158 | 43..228 | 100 | -> | Minus |
3R | 25679214..25679237 | 19..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:50:04 Download gff for
BO15012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21504695..21504880 | 43..228 | 100 | -> | Minus |
arm_3R | 21504936..21504959 | 19..42 | 100 | | Minus |
arm_3R | 21504499..21504621 | 229..351 | 100 | -> | Minus |
BO15012.5prime Sequence
365 bp (365 high quality bases) assembled on 2006-06-16
> BO15012.5prime
GAAGTTATCCTTCGACATGAAGTTACTTGAGCCTCAGACGACCATTAGTC
CTGAACCGGACATACTGCATCCGGACGACGGTCAATACATATGGCTGCCA
ATTTCCGTGCTCGTTGGCATTTTCGTTCTGGCTGCACTGGTCTACGCCAT
GTCACGTAGTCGCTGTCGGAATTCCTGGGATTGCCTAAAGAGCAGGAAGG
CTCCGCGAAGTGGATACATCAATGTGGATGAGGAGGATTCCGATGTGCCC
ATGGACTGCGGAGATGAACTGGGAGATCAAAGGACTACTGCTACTCTCCT
CACTGGTCGCCTCCACATTCAGGATGGAGCGAATAACGCCTCCAATGCCG
CAAGCTTTCTAGACC
BO15012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-PA | 336 | CG5039-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 719 | CG5039-RA | 95..427 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25678968..25679159 | 135..326 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 25678777..25678901 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:44:47 has no hits.
BO15012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:31 Download gff for
BO15012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:14 Download gff for
BO15012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-PA | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:05 Download gff for
BO15012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..427 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:15 Download gff for
BO15012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..427 | 17..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:15 Download gff for
BO15012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25678777..25678899 | 17..139 | 100 | -> | Plus |
3R | 25678973..25679158 | 140..325 | 100 | -> | Plus |
3R | 25679214..25679237 | 326..349 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:05 Download gff for
BO15012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21504499..21504621 | 17..139 | 100 | -> | Plus |
arm_3R | 21504695..21504880 | 140..325 | 100 | -> | Plus |
arm_3R | 21504936..21504959 | 326..349 | 100 | | Plus |
BO15012.complete Sequence
367 bp (367 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633326
> BO15012.complete
GAAGTTATCAGTCGACATGAAGTTACTTGAGCCTCAGACGACCATTAGTC
CTGAACCGGACATACTGCATCCGGACGACGGTCAATACATATGGCTGCCA
ATTTCCGTGCTCGTTGGCATTTTCGTTCTGGCTGCACTGGTCTACGCCAT
GTCACGTAGTCGCTGTCGGAATTCCTGGGATTGCCTAAAGAGCAGGAAGG
CTCCGCGAAGTGGATACATCAATGTGGATGAGGAGGATTCCGATGTGCCC
ATGGACTGCGGAGATGAACTGGGAGATCAAAGGACTACTGCTACTCTCCT
CACTGGTCGCCTCCACATTCAGGATGGAGCGAATAACGCCTCCAATGCCG
CAAGCTTTCTAGACCAT
BO15012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 336 | CG5039-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-RA | 719 | CG5039-RA | 95..427 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25678968..25679159 | 135..326 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 25678777..25678901 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:11:46 has no hits.
BO15012.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:50 Download gff for
BO15012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 1..336 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:23 Download gff for
BO15012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 66..398 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:42 Download gff for
BO15012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..427 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:50 Download gff for
BO15012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 66..398 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:28 Download gff for
BO15012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5039-RA | 95..427 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:28 Download gff for
BO15012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25678777..25678899 | 17..139 | 100 | -> | Plus |
3R | 25678973..25679158 | 140..325 | 100 | -> | Plus |
3R | 25679214..25679237 | 326..351 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:42 Download gff for
BO15012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21504499..21504621 | 17..139 | 100 | -> | Plus |
arm_3R | 21504695..21504880 | 140..325 | 100 | -> | Plus |
arm_3R | 21504936..21504959 | 326..351 | 92 | | Plus |
BO15012.pep Sequence
Translation from 16 to 367
> BO15012.pep
MKLLEPQTTISPEPDILHPDDGQYIWLPISVLVGIFVLAALVYAMSRSRC
RNSWDCLKSRKAPRSGYINVDEEDSDVPMDCGDELGDQRTTATLLTGRLH
IQDGANNASNAASFLDH
BO15012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5039-PA | 111 | CG5039-PA | 1..111 | 1..111 | 587 | 100 | Plus |