Clone Sequence Records
BO15016.5prime Sequence
771 bp (689 high quality bases) assembled on 2006-06-16
> BO15016.5prime
GAAGTTATCAGTCGACATGACGGAGCTGCTGATTGATCCGGACATCCGCG
TGTGGGTGTTCCTGCCCATCGTGCTGATCACGTTCCTGGTGGGCATTGTG
CGCCACTACGTCTCTATACTGATATCCACGCAGAAGAAGGCCGAGATCAC
CCAAATCCAGGACAGCCAGGCAATGATCCGGGCACGCTTGCTACGCGAGA
ACGGCAAGTATCTCAGCGCCCAGAGCTTCTCCATGCGTAAGAACTACTTC
AACAACGAGGAGACCGGCTACTTCAAGACTCAGAAACGGGCGCCTGTAGC
CCAAAACTCATCCGCCATGCTCACCGACATGGTCAAGGGAAACTTTATTA
ACGTGCTGCCCATGGTCGTGATCGGTGGCTGGATCAACTGGATGTTTTCG
GGCTTCGTCACCACCAAGGTACCCTTCCCGTTGACCCTGCGCTTTAAGCC
CATGCTCCAGCGGGGCGTGGAGCTGGCCTCGCTGGACGCCGCCTGGGTCT
CCTCAGCCTCTTGGTACTTCCTCAACGTGTTCGGCCTGCGCTCCATCTAC
ACACTGGTTCTTGGCGAGAACAATCATGCCGATCAGACGCAGGCACAGGC
GGATGCCATGACGGGCGCCGCCATGACTATGCCCCAGGATCCAAAGGCCG
CCTTCAAGGCCGAGTGGGAGGCGCTCGAGATAACCGAGTACCACAACGCA
CTCAAGAACATTGACGCTGACATGCTGGCTATCGCCAGTGCACCCGCGGC
ATCATCCGCAAGCTTTCTAGA
BO15016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6750-PA | 744 | CG6750-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6750-RA | 964 | CG6750-RA | 90..830 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10731534..10732129 | 757..162 | 2980 | 100 | Minus |
2L | 23513712 | 2L | 10732186..10732334 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:51:00 has no hits.
BO15016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:35 Download gff for
BO15016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-PA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:19 Download gff for
BO15016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-PA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:37 Download gff for
BO15016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-RA | 90..835 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:54 Download gff for
BO15016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-RA | 90..835 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:54 Download gff for
BO15016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10731529..10732125 | 166..765 | 99 | <- | Minus |
2L | 10732186..10732334 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:37 Download gff for
BO15016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10732186..10732334 | 17..165 | 100 | | Minus |
arm_2L | 10731529..10732125 | 166..765 | 99 | <- | Minus |
BO15016.complete Sequence
775 bp assembled on 2007-10-25
GenBank Submission: FJ633328
> BO15016.complete
GAAGTTATCAGTCGACATGACGGAGCTGCTGATTGATCCGGACATCCGCG
TGTGGGTGTTCCTGCCCATCGTGCTGATCACGTTCCTGGTGGGCATTGTG
CGCCACTACGTCTCTATACTGATATCCACGCAGAAGAAGGCCGAGATCAC
CCAAATCCAGGACAGCCAGGCAATGATCCGGGCACGCTTGCTACGCGAGA
ACGGCAAGTATCTCAGCGCCCAGAGCTTCTCCATGCGTAAGAACTACTTC
AACAACGAGGAGACCGGCTACTTCAAGACTCAGAAACGGGCGCCTGTAGC
CCAAAACTCATCCGCCATGCTCACCGACATGGTCAAGGGAAACTTTATTA
ACGTGCTGCCCATGGTCGTGATCGGTGGCTGGATCAACTGGATGTTTTCG
GGCTTCGTCACCACCAAGGTACCCTTCCCGTTGACCCTGCGCTTTAAGCC
CATGCTCCAGCGGGGCGTGGAGCTGGCCTCGCTGGACGCCGCCTGGGTCT
CCTCAGCCTCTTGGTACTTCCTCAACGTGTTCGGCCTGCGCTCCATCTAC
ACACTGGTTCTTGGCGAGAACAATCATGCCGATCAGACGCAGGCACAGGC
GGATGCCATGACGGGCGCCGCCATGACTATGCCCCAGGATCCAAAGGCCG
CCTTCAAGGCCGAGTGGGAGGCGCTCGAGATAACCGAGTACCACAACGCA
CTCAAGAACATTGACGCTGACATGCTGGCTATCGCCAGTGCACCCGCGGC
ATCATCCGCAAGCTTTCTAGACCAT
BO15016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6750-RA | 744 | CG6750-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6750-RA | 964 | CG6750-RA | 90..830 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10731534..10732129 | 757..162 | 2980 | 100 | Minus |
2L | 23513712 | 2L | 10732186..10732334 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:11:52 has no hits.
BO15016.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:40 Download gff for
BO15016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-RA | 1..744 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:04 Download gff for
BO15016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-RA | 73..818 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:40 Download gff for
BO15016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-RA | 90..830 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:16 Download gff for
BO15016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-RA | 73..813 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:58 Download gff for
BO15016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6750-RA | 90..830 | 17..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:58 Download gff for
BO15016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10732186..10732334 | 17..165 | 100 | | Minus |
2L | 10731532..10732125 | 166..759 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:40 Download gff for
BO15016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10731532..10732125 | 166..759 | 99 | <- | Minus |
arm_2L | 10732186..10732334 | 17..165 | 100 | | Minus |
BO15016.pep Sequence
Translation from 16 to 775
> BO15016.pep
MTELLIDPDIRVWVFLPIVLITFLVGIVRHYVSILISTQKKAEITQIQDS
QAMIRARLLRENGKYLSAQSFSMRKNYFNNEETGYFKTQKRAPVAQNSSA
MLTDMVKGNFINVLPMVVIGGWINWMFSGFVTTKVPFPLTLRFKPMLQRG
VELASLDAAWVSSASWYFLNVFGLRSIYTLVLGENNHADQTQAQADAMTG
AAMTMPQDPKAAFKAEWEALEITEYHNALKNIDADMLAIASAPAASSASF
LDH
BO15016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6750-PA | 247 | CG6750-PA | 1..247 | 1..247 | 1259 | 100 | Plus |