Clone Sequence Records
BO15019.3prime Sequence
857 bp (747 high quality bases) assembled on 2006-05-29
> BO15019.3prime
ATGGTCTAGAAAGCTTGCATTGTCTGGCGTCAGTACCCGGAAGCTATCGT
CGTTTTCTTCGTCTAGGAAGAGCAGACGGAAGATGTCGTTGAAGAAGTCG
GGATAGTAGTCGCATGCGCGTTTGCAGTCCGGAGTCCAGTTGATTTCCAG
CAACTGGGGCTCCATCAACTTCTCCTTATCGTCCTTCCACCGCAGCATGA
TGTCGGCTGCGTAAAGAGCTCGTGATTGGGCACAAGGAGCCAGGCCGCAG
GGTGGATCTGCTTGACTGGCGCACTGAAGCACCTCGAGCAGCATGCTACA
GATCTGCTGCTCCAGAGCCGACCAATCGTTATCCGGATACTGTTCCTGCC
AGAGCGTCAGGAAGTCGTCGCACTTGACGTGATGCAGCTGCGCCTCCGTC
TGGTAGTTCATCACCGTGTAGTGTTTCTCGTAGTCATCGAAGTGATCCAG
CGTGAAGGGATGGTTTGCGAAACGCAGGAAGAACTTCCGGTGTATATATG
CCTTCAGGGGTTTGACGCTTTTCAACAGGATTACATAGCGAATATCGAAC
TTAACGCTGCCTTCCACCTCCTGCCGACTAAAGAGAACTGGTCGCTCGAT
GTACTTCTGCGCTATCTTCGGTCCAGTGGCCGGTAGACGTACGATCTGCT
TGATGTTGTCCGTGATATGTGTGTCCAATCCGCGAGCCAAGTTCCAGGGC
TTGATAATCCAGTGGTTGTCGAGGCCCTTGGCTGCTCTCGTTTGGTAGTA
AGCCGCGAACTCCTTTTCTTCGGTGGACAGATTATAGGTGGTGGGGAGCC
ATGCCGGAAACGTTTCAAGCGTAAGGCTATCATGGTGCTCCTTGGCCGCC
CGGCGGC
BO15019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-PA | 1881 | CG1550-RA | 1040..1878 | 857..19 | 4170 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1961 | CG1550-RA | 1082..1920 | 857..19 | 4180 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7810109..7810947 | 19..857 | 4180 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:57:18 has no hits.
BO15019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:40 Download gff for
BO15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1040..1881 | 16..857 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:25 Download gff for
BO15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1040..1881 | 16..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:54 Download gff for
BO15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 1082..1920 | 19..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:52:15 Download gff for
BO15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 1082..1920 | 19..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:52:15 Download gff for
BO15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7810109..7810947 | 19..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:54 Download gff for
BO15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3697614..3698452 | 19..857 | 99 | | Plus |
BO15019.5prime Sequence
732 bp (723 high quality bases) assembled on 2006-06-16
> BO15019.5prime
GAAGTTATCAGTCGACATGGACGGCATAAACAAGTACAACGAGTTTGTGG
CGCTGCACAAGCCACAGCTGGAGTCCTCCGGTATTCCGCTGATATTTTGG
CCGGCTCTGTTCCGAAAACTGACCACGGAAACCTTCGATGCCGGCGAGGC
ACTCCAGTTGATGCTGATCGACTACGATGAGGATGAACAGCAGAATCCGG
CCGAGGACGATGACAGTCCCAACCCTGTGTTCGCACTGGGCGTAGCCCGG
GAGCAGGGCATAAAGGCCAGTGATCCTCAGGCCATCTATTTGGTCGATCA
CGCCTGGACGTTCCGGCTAAACGGTGCTCGGCAGCAGCTGGAGGAGTATC
CGCAACTGGCGGAGCGACTTTCTGCCATCACTGGCGTTGACCTTGAGCTG
AAGGATCGGGTCGACAAGATCCTGCGCCGTCTGTGGAAGTACTGCCACGC
CTACTCCATCGGCAGCGAAGGCTTGTCGGACGAGGAGCGCCAGCCCATCT
GGTATGTGATGGACGAAGTCGGCTCGGCTGTGAACCACTCGGACGATCCC
AACTTTCGACTTGTTCCGCTGCTCTACCTAAACACCCAAACCACATACAG
TGTGCTCTTTCCGATTCGGGACTGCGATGTCGGAGAAGCGGTGACCCGCG
ATATGGTGGAGCACGTGGCAAAGGATGCGCCCCAGCGGCCTGCGCTGCTT
TTACCCTGGCGCGATGCCGACCTCACGGGCGA
BO15019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-PA | 1881 | CG1550-RA | 1..716 | 17..732 | 3580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1961 | CG1550-RA | 43..758 | 17..732 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7811271..7811986 | 732..17 | 3580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:40:12 has no hits.
BO15019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:40:41 Download gff for
BO15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:26 Download gff for
BO15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:46 Download gff for
BO15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 36..757 | 8..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:02 Download gff for
BO15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 36..757 | 8..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:02 Download gff for
BO15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7811272..7811993 | 8..731 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:46 Download gff for
BO15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3698777..3699498 | 8..731 | 99 | | Minus |
BO15019.complete Sequence
1912 bp (1912 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633329
> BO15019.complete
GAAGTTATCAGTCGACATGGACGGCATAAACAAGTACAACGAGTTTGTGG
CGCTGCACAAGCCACAGCTGGAGTCCTCCGGTATTCCGCTGATATTTTGG
CCGGCTCTGTTCCGAAAACTGACCACGGAAACCTTCGATGCCGGCGAGGC
ACTCCAGTTGATGCTGATCGACTACGATGAGGATGAACAGCAGAATCCGG
CCGAGGACGATGACAGTCCCAACCCTGTGTTCGCACTGGGCGTAGCCCGG
GAGCAGGGCATAAAGGCCAGTGATCCTCAGGCCATCTATTTGGTCGATCA
CGCCTGGACGTTCCGGCTAAACGGTGCTCGGCAGCAGCTGGAGGAGTATC
CGCAACTGGCGGAGCGACTTTCTGCCATCACTGGCGTTGACCTTGAGCTG
AAGGATCGGGTCGACAAGATCCTGCGCCGTCTGTGGAAGTACTGCCACGC
CTACTCCATCGGCAGCGAAGGCTTGTCGGACGAGGAGCGCCAGCCCATCT
GGTATGTGATGGACGAAGTCGGCTCGGCTGTGAACCACTCGGACGATCCC
AACTTTCGACTTGTTCCGCTGCTCTACCTAAACACCCAAACCACATACAG
TGTGCTCTTTCCGATTCGGGACTGCGATGTCGGAGAAGCGGTGACCCGCG
ATATGGTGGAGCACGTGGCAAAGGATGCGCCCCAGCGGCCTGCGCTGCTT
TTACCCTGGCGCGATGCCGACCTCACGGGCGAAAGCTTCTTGCAGGTTGA
ACCCCGGGCAGATTACTTTACCAGCGGTCACATCCCTGAGACCTATCCCA
AAGGCGATACTGTTCCACTGCCAGCCAGGTCACGTTGCGATCCGCTGAAG
GTGTATGCAGAGTACGAGGTGGTGCGCCGTCATCTAACTTCGTCCGAGTT
CATCCTAGTTAACAACGCAGACGAGGCGGATGTCCTTTGGCTCACACACC
ACTTCAAGAATTTCGAGGATTTTGCAGATAGGTCGCCCGGCAAGTTCATC
AATCAGTTTCCGTTCGAGTACGTGATCACCATCAAGGATCTCCTTAGCAT
TGTGGGCCGCCGGGCGGCCAAGGAGCACCATGATAGCCTTACGCTTGAAA
CGTTTCCGGCATGGCTCCCCACCACCTATAATCTGTCCACCGAAGTAAAG
GAGTTCGCGGCTTACTACCAAACGAGAGCAGCCAAGGGCCTCGACAACCA
CTGGATTATCAAGCCCTGGAACTTGGCTCGCGGATTGGACACACATATCA
CGGACAACATCAAGCAGATCGTACGTCTACCGGCCACTGGACCGAAGATA
GCGCAGAAGTACATCGAGCGACCAGTTCTCTTTAGTCGGCAGGAGGTGGA
AGGCAGCGTTAAGTTCGATATTCGCTATGTAATCCTGTTGAAAAGCGTCA
AACCCCTGAAGGCATATATACACCGGAAGTTCTTCCTGCGTTTCGCAAAC
CATCCCTTCACGCTGGATCACTTCGATGACTACGAGAAACACTACACGGT
GATGAACTACCAGACGGAGGCGCAGCTGCATCACGTCAAGTGCGACGACT
TCCTGACGCTCTGGCAGGAACAGTATCCGGATAACGATTGGTCGGCTCTG
GAGCAGCAGATCTGTAGCATGCTGCTCGAGGTGCTTCAGTGCGCCAGTCA
AGCAGATCCACCCTGCGGCCTGGCTCCTTGTGCCCAATCACGAGCTCTTT
ACGCAGCCGACATCATGCTGCGGTGGAAGGACGATAAGGAGAAGTTGATG
GAGCCCCAGTTGCTGGAAATCAACTGGACTCCGGACTGCAAACGCGCATG
CGACTACTATCCCGACTTCTTCAACGACATCTTCCGTCTGCTCTTCCTAG
ACGAAGAAAACGACGATAGCTTCCGGGTACTGACGCCAGACAATGCAAGC
TTTCTAGACCAT
BO15019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1881 | CG1550-PA | 1..1878 | 17..1894 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1961 | CG1550-RA | 43..1920 | 17..1894 | 9390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7810109..7811986 | 1894..17 | 9390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:58:12 has no hits.
BO15019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:37 Download gff for
BO15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 1..1881 | 17..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:03 Download gff for
BO15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 43..1927 | 8..1894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:04 Download gff for
BO15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 43..1920 | 17..1896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:37 Download gff for
BO15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 43..1927 | 8..1894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:44 Download gff for
BO15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 43..1920 | 17..1896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:44 Download gff for
BO15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7810105..7811986 | 17..1896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:04 Download gff for
BO15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3697610..3699491 | 17..1896 | 99 | | Minus |
BO15019.pep Sequence
Translation from 16 to 1912
> BO15019.pep
MDGINKYNEFVALHKPQLESSGIPLIFWPALFRKLTTETFDAGEALQLML
IDYDEDEQQNPAEDDDSPNPVFALGVAREQGIKASDPQAIYLVDHAWTFR
LNGARQQLEEYPQLAERLSAITGVDLELKDRVDKILRRLWKYCHAYSIGS
EGLSDEERQPIWYVMDEVGSAVNHSDDPNFRLVPLLYLNTQTTYSVLFPI
RDCDVGEAVTRDMVEHVAKDAPQRPALLLPWRDADLTGESFLQVEPRADY
FTSGHIPETYPKGDTVPLPARSRCDPLKVYAEYEVVRRHLTSSEFILVNN
ADEADVLWLTHHFKNFEDFADRSPGKFINQFPFEYVITIKDLLSIVGRRA
AKEHHDSLTLETFPAWLPTTYNLSTEVKEFAAYYQTRAAKGLDNHWIIKP
WNLARGLDTHITDNIKQIVRLPATGPKIAQKYIERPVLFSRQEVEGSVKF
DIRYVILLKSVKPLKAYIHRKFFLRFANHPFTLDHFDDYEKHYTVMNYQT
EAQLHHVKCDDFLTLWQEQYPDNDWSALEQQICSMLLEVLQCASQADPPC
GLAPCAQSRALYAADIMLRWKDDKEKLMEPQLLEINWTPDCKRACDYYPD
FFNDIFRLLFLDEENDDSFRVLTPDNASFLDH
BO15019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-PA | 626 | CG1550-PA | 1..626 | 1..626 | 3358 | 100 | Plus |
| CG3964-PA | 982 | CG3964-PA | 467..698 | 284..531 | 162 | 25.5 | Plus |
| CG3964-PC | 989 | CG3964-PC | 467..698 | 284..531 | 162 | 25.5 | Plus |
| CG3964-PB | 989 | CG3964-PB | 467..698 | 284..531 | 162 | 25.5 | Plus |
