Clone BO15040 Report

Search the DGRC for BO15040

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:150
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG13385-RA
Protein status:BO15040.pep: validated full length
Sequenced Size:1093

Clone Sequence Records

BO15040.5prime Sequence

827 bp (713 high quality bases) assembled on 2006-06-16

> BO15040.5prime
GAAGTTATCAGTCGACATGGAGTCGAGGGTCACCAGCGGCACAGGTCCAC
CGAACACCATTATGATCCAGCTGGTGTCCCAACAGCCCAGTTCCTGTGGA
CAGATGCAGGCCATGCCCATTTCGGTGCAGACGATACCCTTGTTCCCCAA
TTCCAGAACATCGACAGAGCGACCTTGTCGATCGGTCTCCATTGCCCCGA
ATGTAAGACCTCCAACGGATGTCCCTCCTCCTCGAAGGAATTTAAGAATC
CGACCCGAGGAATATGCGACACCCAAGCGGAAGAATTCGCAAAGCCAGTT
TCGTCATTTCTCCCGCAGCATAAACCAACCTCCACCGGTGTACTATGTTC
TTCGACCAGAAGACCGTATTATGCCCATCTACATACCACCTCCGAGGTTT
AACAATGAGCAAGGATCAAGGATGGCGACGGAGTGTCCTTGCTGTGGCCA
TGCCAAGTCATTGAACCCGGAGGAACCTCTAAGAGTCCACGTAGCGCAGA
AAGAGTTTGTCAAATTAGAGAAGGCAACTCCTGGACATCGGGATCAATGT
ACTAACACCATTGACCAGCCAGATGTGGGAAATATAAGGACGATTTACGA
AACATTGGGACGCGCAATGGTCACTGCAGCCGTGGAGGCAGCCCAGAGAT
CCCAGCCAGCAGGACCCTCAGATCCGACAAATGTAATATTGAAACTATTA
ACCCAATTGGGGGAGCAGAATCAAACAACAGGCTTGAGTCCACATTCAGA
AGCAGTAGCAGAAAGTCCCGACCACCAACCACATATGCGCAGGCCCAAAG
CTAGCTTTACGGAAGCAGTCCGCATGA

BO15040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-PA 1062 CG13385-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-RA 1238 CG13385-RA 92..902 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8396740..8397550 17..827 4055 100 Plus
Blast to na_te.dros performed on 2015-02-02 07:54:53 has no hits.

BO15040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:00 Download gff for BO15040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13385-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:54 Download gff for BO15040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13385-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:45:34 Download gff for BO15040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 22..837 7..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:15:57 Download gff for BO15040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 86..901 7..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:15:57 Download gff for BO15040.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8396734..8397549 7..826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:45:34 Download gff for BO15040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8396734..8397549 7..826 99   Plus

BO15040.complete Sequence

1093 bp (1093 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633331

> BO15040.complete
GAAGTTATCAGTCGACATGGAGTCGAGGGTCACCAGCGGCACAGGTCCAC
CGAACACCATTATGATCCAGCTGGTGTCCCAACAGCCCAGTTCCTGTGGA
CAGATGCAGGCCATGCCCATTTCGGTGCAGACGATACCCTTGTTCCCCAA
TTCCAGAACATCGACAGAGCGACCTTGTCGATCGGTCTCCATTGCCCCGA
ATGTAAGACCTCCAACGGATGTCCCTCCTCCTCGAAGGAATTTAAGAATC
CGACCCGAGGAATATGCGACACCCAAGCGGAAGAATTCGCAAAGCCAGTT
TCGTCATTTCTCCCGCAGCATAAACCAACCTCCACCGGTGTACTATGTTC
TTCGACCAGAAGACCGTATTATGCCCATCTACATACCACCTCCGAGGTTT
AACAATGAGCAAGGATCAAGGATGGCGACGGAGTGTCCTTGCTGTGGCCA
TGCCAAGTCATTGAACCCGGAGGAACCTCTAAGAGTCCACGTAGCGCAGA
AAGAGTTTGTCAAATTAGAGAAGGCAACTCCTGGACATCGGGATCAATGT
ACTAACACCATTGACCAGCCAGATGTGGGAAATATAAGGACGATTTACGA
AACATTGGGACGCGCAATGGTCACTGCAGCCGTGGAGGCAGCCCAGAGAT
CCCAGCCAGCAGGACCCTCAGATCCGACAAATGTAATATTGAAACTATTA
ACCCAATTGGGGGAGCAGAATCAAACAACAGGCTTGAGTCCACATTCAGA
AGCAGTAGCAGAAAGTCCCGACCACCAACCACATATGCGCAGGCCCAAAG
CTAGCTTTACGGAAGCAGTCCGCATGATGGAGAGGACCTCGTCTGATCCT
TCCATTGCTAAAGGGCCACCAGATGAGCTAGATGACCAACGTAGGCTTCC
ATCTGTACTCTCCGATGGTCGTCTTCGCGTCGAATATCCGAAAACGCCTA
GACCAACACCAACATACTCCGTCGAATCTGAAAACACCCTCAGTAATCAT
ATGTCCTCGGAGAGATTAAGACTCGATTCTGGTTCCTCGCCAAACCTGGG
AAACTCCATTGGACATAGCCAAGCGGCAAGCTTTCTAGACCAT

BO15040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-RA 1062 CG13385-PA 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-RA 1238 CG13385-RA 92..1150 17..1075 5295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8396740..8397798 17..1075 5295 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:53:31 has no hits.

BO15040.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:33 Download gff for BO15040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 1..1062 17..1076 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:00 Download gff for BO15040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 22..1092 7..1079 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:48 Download gff for BO15040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 28..1086 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:33 Download gff for BO15040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 22..1092 7..1079 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:24 Download gff for BO15040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13385-RA 92..1150 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:24 Download gff for BO15040.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8396740..8397798 17..1077 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:48 Download gff for BO15040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8396740..8397798 17..1077 99   Plus

BO15040.pep Sequence

Translation from 16 to 1093

> BO15040.pep
MESRVTSGTGPPNTIMIQLVSQQPSSCGQMQAMPISVQTIPLFPNSRTST
ERPCRSVSIAPNVRPPTDVPPPRRNLRIRPEEYATPKRKNSQSQFRHFSR
SINQPPPVYYVLRPEDRIMPIYIPPPRFNNEQGSRMATECPCCGHAKSLN
PEEPLRVHVAQKEFVKLEKATPGHRDQCTNTIDQPDVGNIRTIYETLGRA
MVTAAVEAAQRSQPAGPSDPTNVILKLLTQLGEQNQTTGLSPHSEAVAES
PDHQPHMRRPKASFTEAVRMMERTSSDPSIAKGPPDELDDQRRLPSVLSD
GRLRVEYPKTPRPTPTYSVESENTLSNHMSSERLRLDSGSSPNLGNSIGH
SQAASFLDH

BO15040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13385-PA 353 CG13385-PA 1..353 1..353 1857 100 Plus