Clone BO15041 Report

Search the DGRC for BO15041

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:150
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptSocs44A-RA
Protein status:BO15041.pep: validated full length
Sequenced Size:1060

Clone Sequence Records

BO15041.3prime Sequence

663 bp (662 high quality bases) assembled on 2006-05-29

> BO15041.3prime
ATGGTCTAGAAAGCTTGCACTCTGGAAGACCAGCTCCCGCTCCACCGACA
AGTACTCCAGCATCTGCGCCGGCACTGGCAACTGGGCCAGCTGTTCGCGA
GACATCTGGCGCTGCAGAACACGGCGGCATAAGTCCTGCAGCTTGGGCAT
GTTGGAGTACCGGCTCAACGGGTACTTGAGGATCACTGGAAACGGTGGCT
GCATCTCGTTGGGAACCTTCACAAAGCACACAAAGTTGTCGTTGGTGCAG
CGGTGCAAGATATCTTCGATCATCTCGACAATGGACTCGTACTTAAGTTC
CTCGAAGTGCCAAAAATTGTCGCGATATTCCAGTCGATAATGCAGGGTTA
CGTTCACAATCCGAAAGCTGAGCGTGAATTGGGATCCGCTGGTTTCCGAG
TCGCGGACTAGAAACGACCCAGTCGGCTTGTCACTCAACTGCCGCTGCGA
ATCGCGCCTGGAGATCTCACCCCAGTACCACACTTGGTTGAGCATCTCGG
AGCAGGCCTTGTACATGATCTGGTTGGGCGAGTGGGCGTCCTCGCGCTCA
AGCCATTTCTTCCGGATAAAGCGCAAGTAGTCGTGTGTGAATGGTAGCGT
GGGTTCCGGACAGATGGCCGGCGTAAGGAACTCGTAGGTGGCATCAGTAG
TTCCGCCGTCGTC

BO15041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2160-PA 1029 Socs44A-RA 382..1026 663..19 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1840 CG2160-RA 512..1156 663..19 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8128324..8128792 487..19 2345 100 Minus
2R 25286936 2R 8128086..8128261 663..488 880 100 Minus
Blast to na_te.dros performed 2015-02-12 18:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 1690..1752 19..81 108 63.5 Plus

BO15041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:01 Download gff for BO15041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 382..1029 18..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:55 Download gff for BO15041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 382..1029 18..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:40 Download gff for BO15041.3prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 512..1161 13..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:18 Download gff for BO15041.3prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 512..1161 13..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:18 Download gff for BO15041.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8128086..8128261 488..663 100 -> Minus
2R 8128324..8128797 13..487 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:40 Download gff for BO15041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4015591..4015766 488..663 100 -> Minus
arm_2R 4015829..4016302 13..487 99   Minus

BO15041.5prime Sequence

762 bp (759 high quality bases) assembled on 2006-05-29

> BO15041.5prime
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC
CAGGCGCGATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTC
TAGTCCGCGACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGG
ATTGTGAACGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTG
GCACTTCGAGGA

BO15041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2160-PA 1029 Socs44A-RA 1..746 17..762 3730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1840 CG2160-RA 131..876 17..762 3730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8127705..8128261 17..573 2785 100 Plus
2R 25286936 2R 8128324..8128512 574..762 945 100 Plus
Blast to na_te.dros performed on 2015-02-09 22:44:31 has no hits.

BO15041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:02 Download gff for BO15041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 1..745 17..761 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:57 Download gff for BO15041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 1..745 17..761 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:01 Download gff for BO15041.5prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 122..875 9..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:13 Download gff for BO15041.5prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 122..875 9..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:13 Download gff for BO15041.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8127696..8128261 9..573 99 -> Plus
2R 8128324..8128511 574..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:01 Download gff for BO15041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4015201..4015766 9..573 99 -> Plus
arm_2R 4015829..4016016 574..761 100   Plus

BO15041.complete Sequence

1060 bp (1060 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633332

> BO15041.complete
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC
CAGGCGCGATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTC
TAGTCCGCGACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGG
ATTGTGAACGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTG
GCACTTCGAGGAACTTAAGTACGAGTCCATTGTCGAGATGATCGAAGATA
TCTTGCACCGCTGCACCAACGACAACTTTGTGTGCTTTGTGAAGGTTCCC
AACGAGATGCAGCCACCGTTTCCAGTGATCCTCAAGTACCCGTTGAGCCG
GTACTCCAACATGCCCAAGCTGCAGGACTTATGCCGCCGTGTTCTGCAGC
GCCAGATGTCTCGCGAACAGCTGGCCCAGTTGCCAGTGCCGGCGCAGATG
CTGGAGTACTTGTCGGTGGAGCGGGAGCTGGTCTTCCAGAGTGCAAGCTT
TCTAGACCAT

BO15041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1029 CG2160-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1840 CG2160-RA 131..1156 17..1042 5130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8127705..8128261 17..573 2785 100 Plus
2R 25286936 2R 8128324..8128792 574..1042 2345 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:38:43 has no hits.

BO15041.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:35 Download gff for BO15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 1..1029 17..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:02 Download gff for BO15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 66..1105 9..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:33 Download gff for BO15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 131..1156 17..1044 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:35 Download gff for BO15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 66..1105 9..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:03 Download gff for BO15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 131..1156 17..1044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:03 Download gff for BO15041.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8127705..8128261 17..573 100 -> Plus
2R 8128324..8128792 574..1044 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:33 Download gff for BO15041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4015210..4015766 17..573 100 -> Plus
arm_2R 4015829..4016297 574..1044 99   Plus

BO15041.pep Sequence

Translation from 16 to 1060

> BO15041.pep
MSHGDQSQNQSSQRSQALTGGGDSPRDREKEKKGWFHSLTRRKKSDSALA
VTASAAVSTSGSQNNNNEVCVLEAADSSMASCSNGGTGTGTLRRRRDKDK
RNVFARLRRKVGQGLSSLRNWHSMGDCDDGGTTDATYEFLTPAICPEPTL
PFTHDYLRFIRKKWLEREDAHSPNQIMYKACSEMLNQVWYWGEISRRDSQ
RQLSDKPTGSFLVRDSETSGSQFTLSFRIVNVTLHYRLEYRDNFWHFEEL
KYESIVEMIEDILHRCTNDNFVCFVKVPNEMQPPFPVILKYPLSRYSNMP
KLQDLCRRVLQRQMSREQLAQLPVPAQMLEYLSVERELVFQSASFLDH

BO15041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-PA 342 CG2160-PA 1..342 1..342 1810 100 Plus
Socs16D-PB 1021 CG8146-PB 783..997 129..333 227 30.1 Plus
Socs16D-PA 1016 CG8146-PA 845..992 189..333 225 34.2 Plus