Clone Sequence Records
BO15041.3prime Sequence
663 bp (662 high quality bases) assembled on 2006-05-29
> BO15041.3prime
ATGGTCTAGAAAGCTTGCACTCTGGAAGACCAGCTCCCGCTCCACCGACA
AGTACTCCAGCATCTGCGCCGGCACTGGCAACTGGGCCAGCTGTTCGCGA
GACATCTGGCGCTGCAGAACACGGCGGCATAAGTCCTGCAGCTTGGGCAT
GTTGGAGTACCGGCTCAACGGGTACTTGAGGATCACTGGAAACGGTGGCT
GCATCTCGTTGGGAACCTTCACAAAGCACACAAAGTTGTCGTTGGTGCAG
CGGTGCAAGATATCTTCGATCATCTCGACAATGGACTCGTACTTAAGTTC
CTCGAAGTGCCAAAAATTGTCGCGATATTCCAGTCGATAATGCAGGGTTA
CGTTCACAATCCGAAAGCTGAGCGTGAATTGGGATCCGCTGGTTTCCGAG
TCGCGGACTAGAAACGACCCAGTCGGCTTGTCACTCAACTGCCGCTGCGA
ATCGCGCCTGGAGATCTCACCCCAGTACCACACTTGGTTGAGCATCTCGG
AGCAGGCCTTGTACATGATCTGGTTGGGCGAGTGGGCGTCCTCGCGCTCA
AGCCATTTCTTCCGGATAAAGCGCAAGTAGTCGTGTGTGAATGGTAGCGT
GGGTTCCGGACAGATGGCCGGCGTAAGGAACTCGTAGGTGGCATCAGTAG
TTCCGCCGTCGTC
BO15041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2160-PA | 1029 | Socs44A-RA | 382..1026 | 663..19 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1840 | CG2160-RA | 512..1156 | 663..19 | 3225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8128324..8128792 | 487..19 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 8128086..8128261 | 663..488 | 880 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 18:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 1690..1752 | 19..81 | 108 | 63.5 | Plus |
BO15041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:01 Download gff for
BO15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 382..1029 | 18..663 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:55 Download gff for
BO15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 382..1029 | 18..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:40 Download gff for
BO15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 512..1161 | 13..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:18 Download gff for
BO15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 512..1161 | 13..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:18 Download gff for
BO15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8128086..8128261 | 488..663 | 100 | -> | Minus |
2R | 8128324..8128797 | 13..487 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:40 Download gff for
BO15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4015591..4015766 | 488..663 | 100 | -> | Minus |
arm_2R | 4015829..4016302 | 13..487 | 99 | | Minus |
BO15041.5prime Sequence
762 bp (759 high quality bases) assembled on 2006-05-29
> BO15041.5prime
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC
CAGGCGCGATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTC
TAGTCCGCGACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGG
ATTGTGAACGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTG
GCACTTCGAGGA
BO15041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2160-PA | 1029 | Socs44A-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1840 | CG2160-RA | 131..876 | 17..762 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8127705..8128261 | 17..573 | 2785 | 100 | Plus |
2R | 25286936 | 2R | 8128324..8128512 | 574..762 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:44:31 has no hits.
BO15041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:02 Download gff for
BO15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 1..745 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:41:57 Download gff for
BO15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 1..745 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:01 Download gff for
BO15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 122..875 | 9..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:13 Download gff for
BO15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 122..875 | 9..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:13 Download gff for
BO15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8127696..8128261 | 9..573 | 99 | -> | Plus |
2R | 8128324..8128511 | 574..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:01 Download gff for
BO15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4015201..4015766 | 9..573 | 99 | -> | Plus |
arm_2R | 4015829..4016016 | 574..761 | 100 | | Plus |
BO15041.complete Sequence
1060 bp (1060 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633332
> BO15041.complete
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC
CAGGCGCGATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTC
TAGTCCGCGACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGG
ATTGTGAACGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTG
GCACTTCGAGGAACTTAAGTACGAGTCCATTGTCGAGATGATCGAAGATA
TCTTGCACCGCTGCACCAACGACAACTTTGTGTGCTTTGTGAAGGTTCCC
AACGAGATGCAGCCACCGTTTCCAGTGATCCTCAAGTACCCGTTGAGCCG
GTACTCCAACATGCCCAAGCTGCAGGACTTATGCCGCCGTGTTCTGCAGC
GCCAGATGTCTCGCGAACAGCTGGCCCAGTTGCCAGTGCCGGCGCAGATG
CTGGAGTACTTGTCGGTGGAGCGGGAGCTGGTCTTCCAGAGTGCAAGCTT
TCTAGACCAT
BO15041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1029 | CG2160-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1840 | CG2160-RA | 131..1156 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8127705..8128261 | 17..573 | 2785 | 100 | Plus |
2R | 25286936 | 2R | 8128324..8128792 | 574..1042 | 2345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:38:43 has no hits.
BO15041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:35 Download gff for
BO15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 1..1029 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:02 Download gff for
BO15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 66..1105 | 9..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:33 Download gff for
BO15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 131..1156 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:35 Download gff for
BO15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 66..1105 | 9..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:03 Download gff for
BO15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 131..1156 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:03 Download gff for
BO15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8127705..8128261 | 17..573 | 100 | -> | Plus |
2R | 8128324..8128792 | 574..1044 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:33 Download gff for
BO15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4015210..4015766 | 17..573 | 100 | -> | Plus |
arm_2R | 4015829..4016297 | 574..1044 | 99 | | Plus |
BO15041.pep Sequence
Translation from 16 to 1060
> BO15041.pep
MSHGDQSQNQSSQRSQALTGGGDSPRDREKEKKGWFHSLTRRKKSDSALA
VTASAAVSTSGSQNNNNEVCVLEAADSSMASCSNGGTGTGTLRRRRDKDK
RNVFARLRRKVGQGLSSLRNWHSMGDCDDGGTTDATYEFLTPAICPEPTL
PFTHDYLRFIRKKWLEREDAHSPNQIMYKACSEMLNQVWYWGEISRRDSQ
RQLSDKPTGSFLVRDSETSGSQFTLSFRIVNVTLHYRLEYRDNFWHFEEL
KYESIVEMIEDILHRCTNDNFVCFVKVPNEMQPPFPVILKYPLSRYSNMP
KLQDLCRRVLQRQMSREQLAQLPVPAQMLEYLSVERELVFQSASFLDH
BO15041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-PA | 342 | CG2160-PA | 1..342 | 1..342 | 1810 | 100 | Plus |
Socs16D-PB | 1021 | CG8146-PB | 783..997 | 129..333 | 227 | 30.1 | Plus |
Socs16D-PA | 1016 | CG8146-PA | 845..992 | 189..333 | 225 | 34.2 | Plus |