Clone Sequence Records
BO15049.5prime Sequence
729 bp (691 high quality bases) assembled on 2006-06-16
> BO15049.5prime
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAAGTCGC
CAGGTGTACGCCGCAAGCCTTTCTAGACC
BO15049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12847-PA | 699 | Tsp42Ec-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..827 | 17..712 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008424 | 268..712 | 2210 | 99.8 | Plus |
2R | 25286936 | 2R | 7007725..7007917 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7001437..7001514 | 76..153 | 390 | 100 | Plus |
2R | 25286936 | 2R | 7000285..7000344 | 17..76 | 300 | 100 | Plus |
2R | 25286936 | 2R | 7006573..7006632 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:04:47 has no hits.
BO15049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:07 Download gff for
BO15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:04 Download gff for
BO15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:33 Download gff for
BO15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..834 | 12..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:02 Download gff for
BO15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..834 | 12..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:02 Download gff for
BO15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7006568..7006632 | 12..76 | 96 | -> | Plus |
2R | 7007726..7007917 | 77..268 | 100 | -> | Plus |
2R | 7007981..7008431 | 269..721 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:33 Download gff for
BO15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894073..2894137 | 12..76 | 96 | -> | Plus |
arm_2R | 2895231..2895422 | 77..268 | 100 | -> | Plus |
arm_2R | 2895486..2895936 | 269..721 | 98 | | Plus |
BO15049.complete Sequence
731 bp assembled on 2011-06-28
> BO15049.complete
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGC
CAGGTGTACGCCGCAAGCCTTTCTAGACCAT
BO15049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 699 | CG12847-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..827 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008424 | 268..712 | 2225 | 100 | Plus |
2R | 25286936 | 2R | 7007725..7007917 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7001437..7001514 | 76..153 | 390 | 100 | Plus |
2R | 25286936 | 2R | 7000285..7000344 | 17..76 | 300 | 100 | Plus |
2R | 25286936 | 2R | 7006573..7006632 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:13:56 has no hits.
BO15049.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:22 Download gff for
BO15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..822 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:34 Download gff for
BO15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 132..827 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:11 Download gff for
BO15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 132..827 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:11 Download gff for
BO15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7006573..7006632 | 17..76 | 100 | -> | Plus |
2R | 7007726..7007917 | 77..268 | 100 | -> | Plus |
2R | 7007981..7008424 | 269..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:34 Download gff for
BO15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894078..2894137 | 17..76 | 100 | -> | Plus |
arm_2R | 2895231..2895422 | 77..268 | 100 | -> | Plus |
arm_2R | 2895486..2895929 | 269..714 | 99 | | Plus |
BO15049.pep Sequence
Translation from 16 to 730
> BO15049.pep
MGCLSGIVNFILYIVNIVFLIVGILLIVLGSIMLSDLSRFDVAGSGTDPN
TIPICVTVLGGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLT
CWVFVNRSAFLGDMSNLVNLLWDSHDYTAMGVLEETFGCCGDTSYTNYNN
IGLSVPGTCCGYLDRQATCNTPSVYQSRPGCSAKFEEFWNDNMDIIRWSG
LGLCIFDLVVFLIAGALTNCMRSQNAGRQVYAASLSRP
BO15049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-PA | 232 | CG12847-PA | 1..232 | 1..232 | 1236 | 100 | Plus |
CG30160-PA | 222 | CG30160-PA | 1..222 | 1..224 | 513 | 41.9 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 1..222 | 1..224 | 513 | 41.9 | Plus |
Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..231 | 365 | 34.3 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..231 | 365 | 34.3 | Plus |