Clone BO15060 Report

Search the DGRC for BO15060

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:150
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptEig71Ed-RA
Protein status:BO15060.pep: validated full length
Sequenced Size:331

Clone Sequence Records

BO15060.3prime Sequence

329 bp (328 high quality bases) assembled on 2006-05-29

> BO15060.3prime
ATGGTCTAGAAAGCTTGCATTAATACGATCCATGCCAGCGAGTTCAGCAA
TATCATTACAGTTCATGCGTCGATTAGAACCCAAGCAGTTCAGCCTGGTC
AGCTCACAACGTCCTACATTCCTCCAACGCCAATTGTTCCGAGTCTTAGT
TCTGCACTCTTGATTGAGGACGGGCAGGTTACGATCAGCTGCATTATTCA
ATGTTTCCACACAGCGTTCACATCTCCGGGTCAACTCGTCGCAGTTCCGA
TTTTGTCCAGCCACCAAGACCACAAGCAGGACAGAAAATAGGGTCACAAC
TGCTGTAGTATGCATGTCGACTGATAACT

BO15060.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7350-PA 300 Eig71Ed-RA 1..297 315..19 1485 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 415 CG7350-RA 62..358 315..19 1485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15652700..15652903 282..79 1020 100 Minus
3L 28110227 3L 15652977..15653039 81..19 315 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:06:00 has no hits.

BO15060.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:14 Download gff for BO15060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 15..315 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:14 Download gff for BO15060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 15..315 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:02:28 Download gff for BO15060.3prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..361 15..315 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:49 Download gff for BO15060.3prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..361 15..315 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:49 Download gff for BO15060.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15652598..15652631 282..315 100 -> Minus
3L 15652701..15652901 81..281 100 -> Minus
3L 15652978..15653042 15..80 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:02:28 Download gff for BO15060.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15645698..15645731 282..315 100 -> Minus
arm_3L 15645801..15646001 81..281 100 -> Minus
arm_3L 15646078..15646142 15..80 96   Minus

BO15060.5prime Sequence

329 bp (328 high quality bases) assembled on 2006-05-29

> BO15060.5prime
GAAGTTATCAGTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATGCAAGCTTTCTAGACC

BO15060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7350-PA 300 Eig71Ed-RA 1..297 17..313 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 415 CG7350-RA 62..358 17..313 1485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15652700..15652903 50..253 1020 100 Plus
3L 28110227 3L 15652977..15653039 251..313 315 100 Plus
Blast to na_te.dros performed on 2015-02-09 22:44:17 has no hits.

BO15060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:15 Download gff for BO15060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 17..317 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:15 Download gff for BO15060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 17..317 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:56 Download gff for BO15060.5prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..361 17..317 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:10 Download gff for BO15060.5prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..361 17..317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:10 Download gff for BO15060.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15652600..15652631 19..50 100 -> Plus
3L 15652701..15652901 51..251 100 -> Plus
3L 15652978..15653042 252..317 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:56 Download gff for BO15060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15645700..15645731 19..50 100 -> Plus
arm_3L 15645801..15646001 51..251 100 -> Plus
arm_3L 15646078..15646142 252..317 96   Plus

BO15060.complete Sequence

331 bp (331 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633333

> BO15060.complete
GAAGTTATCAGTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATGCAAGCTTTCTAGACCAT

BO15060.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 300 CG7350-PA 1..297 17..313 1485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 415 CG7350-RA 62..358 17..313 1485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15652700..15652903 50..253 1020 100 Plus
3L 28110227 3L 15652977..15653039 251..313 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:56:20 has no hits.

BO15060.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:54 Download gff for BO15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 1..300 17..317 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:53 Download gff for BO15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 55..354 17..317 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:06 Download gff for BO15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..358 17..315 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:54 Download gff for BO15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 55..354 17..317 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:19 Download gff for BO15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..358 17..315 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:19 Download gff for BO15060.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15652598..15652631 17..50 100 -> Plus
3L 15652701..15652901 51..251 100 -> Plus
3L 15652978..15653039 252..315 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:06 Download gff for BO15060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15645698..15645731 17..50 100 -> Plus
arm_3L 15645801..15646001 51..251 100 -> Plus
arm_3L 15646078..15646139 252..315 96   Plus

BO15060.pep Sequence

Translation from 16 to 331

> BO15060.pep
MHTTAVVTLFSVLLVVLVAGQNRNCDELTRRCERCVETLNNAADRNLPVL
NQECRTKTRNNWRWRNVGRCELTRLNCLGSNRRMNCNDIAELAGMDRINA
SFLDH

BO15060.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-PA 99 CG7350-PA 1..99 1..99 532 100 Plus
Eig71Ea-PA 100 CG16931-PA 1..97 1..97 327 59.8 Plus
Eig71Ef-PA 98 CG7599-PA 1..96 1..97 182 37.1 Plus
Eig71Ej-PA 98 CG7588-PA 1..97 1..98 163 32.7 Plus
Eig71Eh-PB 101 CG7594-PB 5..95 7..98 161 33.7 Plus