Clone Sequence Records
BO15060.3prime Sequence
329 bp (328 high quality bases) assembled on 2006-05-29
> BO15060.3prime
ATGGTCTAGAAAGCTTGCATTAATACGATCCATGCCAGCGAGTTCAGCAA
TATCATTACAGTTCATGCGTCGATTAGAACCCAAGCAGTTCAGCCTGGTC
AGCTCACAACGTCCTACATTCCTCCAACGCCAATTGTTCCGAGTCTTAGT
TCTGCACTCTTGATTGAGGACGGGCAGGTTACGATCAGCTGCATTATTCA
ATGTTTCCACACAGCGTTCACATCTCCGGGTCAACTCGTCGCAGTTCCGA
TTTTGTCCAGCCACCAAGACCACAAGCAGGACAGAAAATAGGGTCACAAC
TGCTGTAGTATGCATGTCGACTGATAACT
BO15060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7350-PA | 300 | Eig71Ed-RA | 1..297 | 315..19 | 1485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 415 | CG7350-RA | 62..358 | 315..19 | 1485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15652700..15652903 | 282..79 | 1020 | 100 | Minus |
3L | 28110227 | 3L | 15652977..15653039 | 81..19 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:06:00 has no hits.
BO15060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:14 Download gff for
BO15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 15..315 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:14 Download gff for
BO15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 15..315 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:02:28 Download gff for
BO15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..361 | 15..315 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:49 Download gff for
BO15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..361 | 15..315 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:49 Download gff for
BO15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15652598..15652631 | 282..315 | 100 | -> | Minus |
3L | 15652701..15652901 | 81..281 | 100 | -> | Minus |
3L | 15652978..15653042 | 15..80 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:02:28 Download gff for
BO15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15645698..15645731 | 282..315 | 100 | -> | Minus |
arm_3L | 15645801..15646001 | 81..281 | 100 | -> | Minus |
arm_3L | 15646078..15646142 | 15..80 | 96 | | Minus |
BO15060.5prime Sequence
329 bp (328 high quality bases) assembled on 2006-05-29
> BO15060.5prime
GAAGTTATCAGTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATGCAAGCTTTCTAGACC
BO15060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7350-PA | 300 | Eig71Ed-RA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 415 | CG7350-RA | 62..358 | 17..313 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15652700..15652903 | 50..253 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 15652977..15653039 | 251..313 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:44:17 has no hits.
BO15060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:15 Download gff for
BO15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:15 Download gff for
BO15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:56 Download gff for
BO15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..361 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:10 Download gff for
BO15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..361 | 17..317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:10 Download gff for
BO15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15652600..15652631 | 19..50 | 100 | -> | Plus |
3L | 15652701..15652901 | 51..251 | 100 | -> | Plus |
3L | 15652978..15653042 | 252..317 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:56 Download gff for
BO15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15645700..15645731 | 19..50 | 100 | -> | Plus |
arm_3L | 15645801..15646001 | 51..251 | 100 | -> | Plus |
arm_3L | 15646078..15646142 | 252..317 | 96 | | Plus |
BO15060.complete Sequence
331 bp (331 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633333
> BO15060.complete
GAAGTTATCAGTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATGCAAGCTTTCTAGACCAT
BO15060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 300 | CG7350-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 415 | CG7350-RA | 62..358 | 17..313 | 1485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15652700..15652903 | 50..253 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 15652977..15653039 | 251..313 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:20 has no hits.
BO15060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:54 Download gff for
BO15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 1..300 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:53 Download gff for
BO15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 55..354 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:06 Download gff for
BO15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..358 | 17..315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:54 Download gff for
BO15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 55..354 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:19 Download gff for
BO15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..358 | 17..315 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:19 Download gff for
BO15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15652598..15652631 | 17..50 | 100 | -> | Plus |
3L | 15652701..15652901 | 51..251 | 100 | -> | Plus |
3L | 15652978..15653039 | 252..315 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:06 Download gff for
BO15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15645698..15645731 | 17..50 | 100 | -> | Plus |
arm_3L | 15645801..15646001 | 51..251 | 100 | -> | Plus |
arm_3L | 15646078..15646139 | 252..315 | 96 | | Plus |
BO15060.pep Sequence
Translation from 16 to 331
> BO15060.pep
MHTTAVVTLFSVLLVVLVAGQNRNCDELTRRCERCVETLNNAADRNLPVL
NQECRTKTRNNWRWRNVGRCELTRLNCLGSNRRMNCNDIAELAGMDRINA
SFLDH
BO15060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-PA | 99 | CG7350-PA | 1..99 | 1..99 | 532 | 100 | Plus |
Eig71Ea-PA | 100 | CG16931-PA | 1..97 | 1..97 | 327 | 59.8 | Plus |
Eig71Ef-PA | 98 | CG7599-PA | 1..96 | 1..97 | 182 | 37.1 | Plus |
Eig71Ej-PA | 98 | CG7588-PA | 1..97 | 1..98 | 163 | 32.7 | Plus |
Eig71Eh-PB | 101 | CG7594-PB | 5..95 | 7..98 | 161 | 33.7 | Plus |