Clone BO15065 Report

Search the DGRC for BO15065

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:150
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG7881-RA
Protein status:BO15065.pep: validated full length
Sequenced Size:1480

Clone Sequence Records

BO15065.3prime Sequence

733 bp (690 high quality bases) assembled on 2006-05-29

> BO15065.3prime
ATGGTCTAGAAAGCTTGCTTCTGCTTTTATATCTGCCTTAGCCTCTGAAT
CCGTCCTTGACTTGAACTCCATTTGATGGGCATTTGACTCGCTCTCCGGG
TCCTTCGCCTGCAAATAGTCTTCGGCATCCCACGCCTGCTGATCAGTGGT
GCCCCAAATCAGGTACACCAGGTTGCCAATGAAAAAAACCACAGCGGTCA
TGGCAAACACAATCTGCCACTGGCTTCGTGAGTCCGATTCAGTGACAATG
ACTCCCACTAAGAGCGGCGTTAGGAGCGGAAAGATGTTGCCAATGCCATT
CACTATTGCCATTAGCATTCCAGAATGGTTTGGGGACATGTCGATAATGG
TCAGGATGCTGCCAATCCCAGAGCCAGCATTTAGGCCAGCGTTGATTGTC
ATCAGTGCGATGGCCAGAGTTGTCTGGCTCTTATCCAGAAAGCCAATCCC
AATAAGGGCCGCCGCAGGTCCCCAATAGGAAACGGTGTTAATTGACTTGC
GCAGCGTGGTTAGGGACATCCATTGCCTCGACATGGCCACATCTGCGAAA
ACCAGGTATACATACGACATACCCCACATGGCCAGAAAGGGCAGGGCCGA
GTAGAGAGCGTTGCTTTTAATGTCCATCTCCAGGACGCCGTGCATGTAGG
ACGGTGTCTGCAGTTGCATGGTGGAGTTGGCCCAGCCCTTGAGCGCTCCG
TACACCAACAGTGCGTAAAACGGACTGGATGAC

BO15065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7881-PA 1449 CG7881-RA 776..1446 689..19 3355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7881-RB 2807 CG7881-RB 879..1593 733..19 3515 99.6 Minus
CG7881-RA 2084 CG7881-RA 879..1593 733..19 3515 99.6 Minus
CG12490-RB 1647 CG12490-RB 876..982 645..539 220 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5961957..5962456 234..733 2390 99.4 Plus
2R 25286936 2R 5961489..5961705 19..235 1085 100 Plus
2R 25286936 2R 22835849..22835955 645..539 220 80.4 Minus
2R 25286936 2R 22838573..22838686 651..538 195 78.1 Minus
2R 25286936 2R 22833783..22833868 645..560 190 81.4 Minus
Blast to na_te.dros performed on 2015-02-06 11:21:51 has no hits.

BO15065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:19 Download gff for BO15065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-PA 732..1449 16..733 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:20 Download gff for BO15065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-PA 732..1449 16..733 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:51:09 Download gff for BO15065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 879..1593 19..733 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:33:23 Download gff for BO15065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 879..1593 19..733 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:33:23 Download gff for BO15065.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5961489..5961704 19..234 100 <- Plus
2R 5961958..5962456 235..733 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:51:09 Download gff for BO15065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1848994..1849209 19..234 100 <- Plus
arm_2R 1849463..1849961 235..733 99   Plus

BO15065.5prime Sequence

772 bp (715 high quality bases) assembled on 2006-06-16

> BO15065.5prime
GAAGTTATCAGTCGACATGAGGGACAACGAAAAAGGACCCGTCATCGGCA
TCCGACACATGCAGGCCCTCCTCTTATTCTTGGCCATCGTCGTGAACTAC
ACAGCCCGGCTCAGCGTTAGCGTAGCAATAGTTGCTATGACGGATGCGGC
CACTACTAACTTGGACTTTCCTGAGTACAACTGGAATGGTGTGCAGCAAT
CATACATTCTGTCCAGCTTCTACTGGGGATACATCGTCACTCAATTTCCA
GCCGGTTTTCTCGTTCGCCGCTTCGGGGCTAAGGCGGTGCTGCTCGTCCC
CACGCTGGCTACGGCCGTCCTGAGCGGTCTCACACCGTATTGCGTGGCCT
GGGGTGGCTGGCAGGCTTTTTGCACCATCCGGATTGTGGAGGGTCTTTTT
CAAGGTCTAATCTTTCCGTGCATACATGAGCACCTGGCCAAGTGGTCTCC
GCCAGAGGATCGAAACCGACTGGGCGCCTTTGCGTACTCTGGAGCCGACT
GCGGATCAGTGCTGGCCATGGCTAGCAGCGGTCTTATTGCGAATGGATCA
ATGGGCTGGCCTGGAATTTTCTACGTGTCGGCGGGCACTTGCGGGCTGTG
GTGCCTACTGTGGGTGCTATTCGGCGCTAACAACGCGCCCAGTTCCCGGC
TAATCGGTTCCCGGGAACGGGAGCACATCGAGCGCTCTATGAAGCGGCAG
GATGGCTTTCACGCACAGAAGATTCCAATCCCGTGGCGGGCCATCTGGTC
ATCCAGTCCGTTCTACGCACTG

BO15065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7881-PA 1449 CG7881-RA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7881-RB 2807 CG7881-RB 148..903 17..772 3780 100 Plus
CG7881-RA 2084 CG7881-RA 148..903 17..772 3780 100 Plus
CG9826-RC 2096 CG9826-RC 431..662 348..579 290 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5962432..5963031 772..173 3000 100 Minus
2R 25286936 2R 5963093..5963232 173..34 700 100 Minus
2R 25286936 2R 22841231..22841462 348..579 260 74.1 Plus
Blast to na_te.dros performed on 2015-02-09 10:58:44 has no hits.

BO15065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:20 Download gff for BO15065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-PA 1..756 17..772 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:22 Download gff for BO15065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-PA 1..756 17..772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:46 Download gff for BO15065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 140..903 8..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:10 Download gff for BO15065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 140..903 8..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:10 Download gff for BO15065.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5963094..5963230 36..172 100 <- Minus
2R 5962432..5963031 173..772 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:46 Download gff for BO15065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1850599..1850735 36..172 100 <- Minus
arm_2R 1849937..1850536 173..772 100 <- Minus

BO15065.complete Sequence

1480 bp (1480 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ633334

> BO15065.complete
GAAGTTATCAGTCGACATGAGGGACAACGAAAAAGGACCCGTCATCGGCA
TCCGACACATGCAGGCCCTCCTCTTATTCTTGGCCATCGTCGTGAACTAC
ACAGCCCGGCTCAGCGTTAGCGTAGCAATAGTTGCTATGACGGATGCGGC
CACTACTAACTTGGACTTTCCTGAGTACAACTGGAATGGTGTGCAGCAAT
CATACATTCTGTCCAGCTTCTACTGGGGATACATCGTCACTCAATTTCCA
GCCGGTTTTCTCGTTCGCCGCTTCGGGGCTAAGGCGGTGCTGCTCGTCCC
CACGCTGGCTACGGCCGTCCTGAGCGGTCTCACACCGTATTGCGTGGCCT
GGGGTGGCTGGCAGGCTTTTTGCACCATCCGGATTGTGGAGGGTCTTTTT
CAAGGTCTAATCTTTCCGTGCATACATGAGCACCTGGCCAAGTGGTCTCC
GCCAGAGGATCGAAACCGACTGGGCGCCTTTGCGTACTCTGGAGCCGACT
GCGGATCAGTGCTGGCCATGGCTAGCAGCGGTCTTATTGCGAATGGATCA
ATGGGCTGGCCTGGAATTTTCTACGTGTCGGCGGGCACTTGCGGGCTGTG
GTGCCTACTGTGGGTGCTATTCGGCGCTAACAACGCGCCCAGTTCCCGGC
TAATCGGTTCCCGGGAACGGGAGCACATCGAGCGCTCTATGAAGCGGCAG
GATGGCTTTCACGCACAGAAGATTCCAATCCCGTGGCGGGCCATCTGGTC
ATCCAGTCCGTTCTACGCACTGTTGGTGGTACGGAGCGCTCAGGGCTGGG
CCAACTCCACCATGCAACTGCAGACACCGTCCTACATGCACGGCGTCCTG
GAGATGGACATTAAAAGCAACGCTCTCTACTCGGCCCTGCCCTTTCTGGC
CATGTGGGGTATGTCGTATGTATACCTGGTTTTCGCAGATGTGGCCATGT
CGAGGCAATGGATGTCCCTAACCACGCTGCGCAAGTCAATTAACACCGTT
TCCTATTGGGGACCTGCGGCGGCCCTTATTGGGATTGGCTTTCTGGATAA
GAGCCAGACAACTCTGGCCATCGCACTGATGACAATCAACGCTGGCCTAA
ATGCTGGCTCTGGGATTGGCAGCATCCTGACCATTATCGACATGTCCCCA
AACCATTCTGGAATGCTAATGGCAATAGTGAATGGCATTGGCAACATCTT
TCCGCTCCTAACGCCGCTCTTAGTGGGAGTCATTGTCACTGAATCGGACT
CACGAAGCCAGTGGCAGATTGTGTTTGCCATGACCGCTGTGGTTTTTTTC
ATTGGCAACCTGGTGTACCTGATTTGGGGCACCACTGATCAGCAGGCGTG
GGATGCCGAAGACTATTTGCAGGCGAAGGACCCGGAGAGCGAGTCAAATG
CCCATCAAATGGAGTTCAAGTCAAGGACGGATTCAGAGGCTAAGGCAGAT
ATAAAAGCAGAAGCAAGCTTTCTAGACCAT

BO15065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7881-RB 1449 CG7881-PB 1..1446 17..1462 7230 100 Plus
CG7881-RA 1449 CG7881-PA 1..1446 17..1462 7230 100 Plus
CG9826-RC 1488 CG9826-PC 335..566 348..579 260 74.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7881-RB 2807 CG7881-RB 148..1593 17..1462 7230 100 Plus
CG7881-RA 2084 CG7881-RA 148..1593 17..1462 7230 100 Plus
CG9826-RC 2096 CG9826-RC 431..662 348..579 260 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5961957..5963031 1247..173 5375 100 Minus
2R 25286936 2R 5961489..5961705 1462..1246 1085 100 Minus
2R 25286936 2R 5963093..5963232 173..34 700 100 Minus
2R 25286936 2R 22841231..22841462 348..579 260 74.1 Plus
2R 25286936 2R 22835849..22835955 836..942 220 80.4 Plus
2R 25286936 2R 22838573..22838686 830..943 195 78.1 Plus
2R 25286936 2R 22833783..22833868 836..921 190 81.4 Plus
Blast to na_te.dros performed on 2014-11-27 15:38:08 has no hits.

BO15065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:39 Download gff for BO15065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 1..1449 17..1465 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:05 Download gff for BO15065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 120..1573 8..1462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:18 Download gff for BO15065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 148..1593 17..1464 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:39 Download gff for BO15065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 120..1573 8..1462 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:36 Download gff for BO15065.complete
Subject Subject Range Query Range Percent Splice Strand
CG7881-RA 148..1593 17..1464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:36 Download gff for BO15065.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5961486..5961704 1247..1464 99 <- Minus
2R 5961958..5963031 173..1246 100 <- Minus
2R 5963094..5963230 36..172 100 <- Minus
2R 5966691..5966709 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:18 Download gff for BO15065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1848991..1849209 1247..1464 99 <- Minus
arm_2R 1849463..1850536 173..1246 100 <- Minus
arm_2R 1850599..1850735 36..172 100 <- Minus
arm_2R 1854196..1854214 17..35 100   Minus

BO15065.pep Sequence

Translation from 16 to 1480

> BO15065.pep
MRDNEKGPVIGIRHMQALLLFLAIVVNYTARLSVSVAIVAMTDAATTNLD
FPEYNWNGVQQSYILSSFYWGYIVTQFPAGFLVRRFGAKAVLLVPTLATA
VLSGLTPYCVAWGGWQAFCTIRIVEGLFQGLIFPCIHEHLAKWSPPEDRN
RLGAFAYSGADCGSVLAMASSGLIANGSMGWPGIFYVSAGTCGLWCLLWV
LFGANNAPSSRLIGSREREHIERSMKRQDGFHAQKIPIPWRAIWSSSPFY
ALLVVRSAQGWANSTMQLQTPSYMHGVLEMDIKSNALYSALPFLAMWGMS
YVYLVFADVAMSRQWMSLTTLRKSINTVSYWGPAAALIGIGFLDKSQTTL
AIALMTINAGLNAGSGIGSILTIIDMSPNHSGMLMAIVNGIGNIFPLLTP
LLVGVIVTESDSRSQWQIVFAMTAVVFFIGNLVYLIWGTTDQQAWDAEDY
LQAKDPESESNAHQMEFKSRTDSEAKADIKAEASFLDH

BO15065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7881-PB 482 CG7881-PB 1..482 1..482 2521 100 Plus
CG7881-PA 482 CG7881-PA 1..482 1..482 2521 100 Plus
CG9826-PC 495 CG9826-PC 7..459 6..458 1537 59.8 Plus
CG9826-PA 495 CG9826-PA 7..459 6..458 1537 59.8 Plus
CG9825-PA 485 CG9825-PA 4..484 3..481 1465 54.9 Plus