Clone Sequence Records
BO15065.3prime Sequence
733 bp (690 high quality bases) assembled on 2006-05-29
> BO15065.3prime
ATGGTCTAGAAAGCTTGCTTCTGCTTTTATATCTGCCTTAGCCTCTGAAT
CCGTCCTTGACTTGAACTCCATTTGATGGGCATTTGACTCGCTCTCCGGG
TCCTTCGCCTGCAAATAGTCTTCGGCATCCCACGCCTGCTGATCAGTGGT
GCCCCAAATCAGGTACACCAGGTTGCCAATGAAAAAAACCACAGCGGTCA
TGGCAAACACAATCTGCCACTGGCTTCGTGAGTCCGATTCAGTGACAATG
ACTCCCACTAAGAGCGGCGTTAGGAGCGGAAAGATGTTGCCAATGCCATT
CACTATTGCCATTAGCATTCCAGAATGGTTTGGGGACATGTCGATAATGG
TCAGGATGCTGCCAATCCCAGAGCCAGCATTTAGGCCAGCGTTGATTGTC
ATCAGTGCGATGGCCAGAGTTGTCTGGCTCTTATCCAGAAAGCCAATCCC
AATAAGGGCCGCCGCAGGTCCCCAATAGGAAACGGTGTTAATTGACTTGC
GCAGCGTGGTTAGGGACATCCATTGCCTCGACATGGCCACATCTGCGAAA
ACCAGGTATACATACGACATACCCCACATGGCCAGAAAGGGCAGGGCCGA
GTAGAGAGCGTTGCTTTTAATGTCCATCTCCAGGACGCCGTGCATGTAGG
ACGGTGTCTGCAGTTGCATGGTGGAGTTGGCCCAGCCCTTGAGCGCTCCG
TACACCAACAGTGCGTAAAACGGACTGGATGAC
BO15065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-PA | 1449 | CG7881-RA | 776..1446 | 689..19 | 3355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 2807 | CG7881-RB | 879..1593 | 733..19 | 3515 | 99.6 | Minus |
CG7881-RA | 2084 | CG7881-RA | 879..1593 | 733..19 | 3515 | 99.6 | Minus |
CG12490-RB | 1647 | CG12490-RB | 876..982 | 645..539 | 220 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5961957..5962456 | 234..733 | 2390 | 99.4 | Plus |
2R | 25286936 | 2R | 5961489..5961705 | 19..235 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 22835849..22835955 | 645..539 | 220 | 80.4 | Minus |
2R | 25286936 | 2R | 22838573..22838686 | 651..538 | 195 | 78.1 | Minus |
2R | 25286936 | 2R | 22833783..22833868 | 645..560 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:21:51 has no hits.
BO15065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:19 Download gff for
BO15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 732..1449 | 16..733 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:20 Download gff for
BO15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 732..1449 | 16..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:51:09 Download gff for
BO15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 879..1593 | 19..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:33:23 Download gff for
BO15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 879..1593 | 19..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:33:23 Download gff for
BO15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5961489..5961704 | 19..234 | 100 | <- | Plus |
2R | 5961958..5962456 | 235..733 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:51:09 Download gff for
BO15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1848994..1849209 | 19..234 | 100 | <- | Plus |
arm_2R | 1849463..1849961 | 235..733 | 99 | | Plus |
BO15065.5prime Sequence
772 bp (715 high quality bases) assembled on 2006-06-16
> BO15065.5prime
GAAGTTATCAGTCGACATGAGGGACAACGAAAAAGGACCCGTCATCGGCA
TCCGACACATGCAGGCCCTCCTCTTATTCTTGGCCATCGTCGTGAACTAC
ACAGCCCGGCTCAGCGTTAGCGTAGCAATAGTTGCTATGACGGATGCGGC
CACTACTAACTTGGACTTTCCTGAGTACAACTGGAATGGTGTGCAGCAAT
CATACATTCTGTCCAGCTTCTACTGGGGATACATCGTCACTCAATTTCCA
GCCGGTTTTCTCGTTCGCCGCTTCGGGGCTAAGGCGGTGCTGCTCGTCCC
CACGCTGGCTACGGCCGTCCTGAGCGGTCTCACACCGTATTGCGTGGCCT
GGGGTGGCTGGCAGGCTTTTTGCACCATCCGGATTGTGGAGGGTCTTTTT
CAAGGTCTAATCTTTCCGTGCATACATGAGCACCTGGCCAAGTGGTCTCC
GCCAGAGGATCGAAACCGACTGGGCGCCTTTGCGTACTCTGGAGCCGACT
GCGGATCAGTGCTGGCCATGGCTAGCAGCGGTCTTATTGCGAATGGATCA
ATGGGCTGGCCTGGAATTTTCTACGTGTCGGCGGGCACTTGCGGGCTGTG
GTGCCTACTGTGGGTGCTATTCGGCGCTAACAACGCGCCCAGTTCCCGGC
TAATCGGTTCCCGGGAACGGGAGCACATCGAGCGCTCTATGAAGCGGCAG
GATGGCTTTCACGCACAGAAGATTCCAATCCCGTGGCGGGCCATCTGGTC
ATCCAGTCCGTTCTACGCACTG
BO15065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-PA | 1449 | CG7881-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 2807 | CG7881-RB | 148..903 | 17..772 | 3780 | 100 | Plus |
CG7881-RA | 2084 | CG7881-RA | 148..903 | 17..772 | 3780 | 100 | Plus |
CG9826-RC | 2096 | CG9826-RC | 431..662 | 348..579 | 290 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5962432..5963031 | 772..173 | 3000 | 100 | Minus |
2R | 25286936 | 2R | 5963093..5963232 | 173..34 | 700 | 100 | Minus |
2R | 25286936 | 2R | 22841231..22841462 | 348..579 | 260 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-09 10:58:44 has no hits.
BO15065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:20 Download gff for
BO15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:22 Download gff for
BO15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:39:46 Download gff for
BO15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 140..903 | 8..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:10 Download gff for
BO15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 140..903 | 8..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:10 Download gff for
BO15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5963094..5963230 | 36..172 | 100 | <- | Minus |
2R | 5962432..5963031 | 173..772 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:39:46 Download gff for
BO15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1850599..1850735 | 36..172 | 100 | <- | Minus |
arm_2R | 1849937..1850536 | 173..772 | 100 | <- | Minus |
BO15065.complete Sequence
1480 bp (1480 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633334
> BO15065.complete
GAAGTTATCAGTCGACATGAGGGACAACGAAAAAGGACCCGTCATCGGCA
TCCGACACATGCAGGCCCTCCTCTTATTCTTGGCCATCGTCGTGAACTAC
ACAGCCCGGCTCAGCGTTAGCGTAGCAATAGTTGCTATGACGGATGCGGC
CACTACTAACTTGGACTTTCCTGAGTACAACTGGAATGGTGTGCAGCAAT
CATACATTCTGTCCAGCTTCTACTGGGGATACATCGTCACTCAATTTCCA
GCCGGTTTTCTCGTTCGCCGCTTCGGGGCTAAGGCGGTGCTGCTCGTCCC
CACGCTGGCTACGGCCGTCCTGAGCGGTCTCACACCGTATTGCGTGGCCT
GGGGTGGCTGGCAGGCTTTTTGCACCATCCGGATTGTGGAGGGTCTTTTT
CAAGGTCTAATCTTTCCGTGCATACATGAGCACCTGGCCAAGTGGTCTCC
GCCAGAGGATCGAAACCGACTGGGCGCCTTTGCGTACTCTGGAGCCGACT
GCGGATCAGTGCTGGCCATGGCTAGCAGCGGTCTTATTGCGAATGGATCA
ATGGGCTGGCCTGGAATTTTCTACGTGTCGGCGGGCACTTGCGGGCTGTG
GTGCCTACTGTGGGTGCTATTCGGCGCTAACAACGCGCCCAGTTCCCGGC
TAATCGGTTCCCGGGAACGGGAGCACATCGAGCGCTCTATGAAGCGGCAG
GATGGCTTTCACGCACAGAAGATTCCAATCCCGTGGCGGGCCATCTGGTC
ATCCAGTCCGTTCTACGCACTGTTGGTGGTACGGAGCGCTCAGGGCTGGG
CCAACTCCACCATGCAACTGCAGACACCGTCCTACATGCACGGCGTCCTG
GAGATGGACATTAAAAGCAACGCTCTCTACTCGGCCCTGCCCTTTCTGGC
CATGTGGGGTATGTCGTATGTATACCTGGTTTTCGCAGATGTGGCCATGT
CGAGGCAATGGATGTCCCTAACCACGCTGCGCAAGTCAATTAACACCGTT
TCCTATTGGGGACCTGCGGCGGCCCTTATTGGGATTGGCTTTCTGGATAA
GAGCCAGACAACTCTGGCCATCGCACTGATGACAATCAACGCTGGCCTAA
ATGCTGGCTCTGGGATTGGCAGCATCCTGACCATTATCGACATGTCCCCA
AACCATTCTGGAATGCTAATGGCAATAGTGAATGGCATTGGCAACATCTT
TCCGCTCCTAACGCCGCTCTTAGTGGGAGTCATTGTCACTGAATCGGACT
CACGAAGCCAGTGGCAGATTGTGTTTGCCATGACCGCTGTGGTTTTTTTC
ATTGGCAACCTGGTGTACCTGATTTGGGGCACCACTGATCAGCAGGCGTG
GGATGCCGAAGACTATTTGCAGGCGAAGGACCCGGAGAGCGAGTCAAATG
CCCATCAAATGGAGTTCAAGTCAAGGACGGATTCAGAGGCTAAGGCAGAT
ATAAAAGCAGAAGCAAGCTTTCTAGACCAT
BO15065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 1449 | CG7881-PB | 1..1446 | 17..1462 | 7230 | 100 | Plus |
CG7881-RA | 1449 | CG7881-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
CG9826-RC | 1488 | CG9826-PC | 335..566 | 348..579 | 260 | 74.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 2807 | CG7881-RB | 148..1593 | 17..1462 | 7230 | 100 | Plus |
CG7881-RA | 2084 | CG7881-RA | 148..1593 | 17..1462 | 7230 | 100 | Plus |
CG9826-RC | 2096 | CG9826-RC | 431..662 | 348..579 | 260 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5961957..5963031 | 1247..173 | 5375 | 100 | Minus |
2R | 25286936 | 2R | 5961489..5961705 | 1462..1246 | 1085 | 100 | Minus |
2R | 25286936 | 2R | 5963093..5963232 | 173..34 | 700 | 100 | Minus |
2R | 25286936 | 2R | 22841231..22841462 | 348..579 | 260 | 74.1 | Plus |
2R | 25286936 | 2R | 22835849..22835955 | 836..942 | 220 | 80.4 | Plus |
2R | 25286936 | 2R | 22838573..22838686 | 830..943 | 195 | 78.1 | Plus |
2R | 25286936 | 2R | 22833783..22833868 | 836..921 | 190 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:38:08 has no hits.
BO15065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:39 Download gff for
BO15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 1..1449 | 17..1465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:05 Download gff for
BO15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 120..1573 | 8..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:18 Download gff for
BO15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 148..1593 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:39 Download gff for
BO15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 120..1573 | 8..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:36 Download gff for
BO15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 148..1593 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:36 Download gff for
BO15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5961486..5961704 | 1247..1464 | 99 | <- | Minus |
2R | 5961958..5963031 | 173..1246 | 100 | <- | Minus |
2R | 5963094..5963230 | 36..172 | 100 | <- | Minus |
2R | 5966691..5966709 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:18 Download gff for
BO15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1848991..1849209 | 1247..1464 | 99 | <- | Minus |
arm_2R | 1849463..1850536 | 173..1246 | 100 | <- | Minus |
arm_2R | 1850599..1850735 | 36..172 | 100 | <- | Minus |
arm_2R | 1854196..1854214 | 17..35 | 100 | | Minus |
BO15065.pep Sequence
Translation from 16 to 1480
> BO15065.pep
MRDNEKGPVIGIRHMQALLLFLAIVVNYTARLSVSVAIVAMTDAATTNLD
FPEYNWNGVQQSYILSSFYWGYIVTQFPAGFLVRRFGAKAVLLVPTLATA
VLSGLTPYCVAWGGWQAFCTIRIVEGLFQGLIFPCIHEHLAKWSPPEDRN
RLGAFAYSGADCGSVLAMASSGLIANGSMGWPGIFYVSAGTCGLWCLLWV
LFGANNAPSSRLIGSREREHIERSMKRQDGFHAQKIPIPWRAIWSSSPFY
ALLVVRSAQGWANSTMQLQTPSYMHGVLEMDIKSNALYSALPFLAMWGMS
YVYLVFADVAMSRQWMSLTTLRKSINTVSYWGPAAALIGIGFLDKSQTTL
AIALMTINAGLNAGSGIGSILTIIDMSPNHSGMLMAIVNGIGNIFPLLTP
LLVGVIVTESDSRSQWQIVFAMTAVVFFIGNLVYLIWGTTDQQAWDAEDY
LQAKDPESESNAHQMEFKSRTDSEAKADIKAEASFLDH
BO15065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-PB | 482 | CG7881-PB | 1..482 | 1..482 | 2521 | 100 | Plus |
CG7881-PA | 482 | CG7881-PA | 1..482 | 1..482 | 2521 | 100 | Plus |
CG9826-PC | 495 | CG9826-PC | 7..459 | 6..458 | 1537 | 59.8 | Plus |
CG9826-PA | 495 | CG9826-PA | 7..459 | 6..458 | 1537 | 59.8 | Plus |
CG9825-PA | 485 | CG9825-PA | 4..484 | 3..481 | 1465 | 54.9 | Plus |