Clone Sequence Records
BO15068.3prime Sequence
821 bp (821 high quality bases) assembled on 2006-06-16
> BO15068.3prime
ATGGTCTAGAAAGCTTGCGTAGAAATTGTGGTTTGGATTGTATTGTTCCT
TGATGGAACAGAGTGCGGGATACTCTGGATTACTTCCCGTCCGGCATTCA
GAGGCGGGCTTTCCGGCATTGTAAACAGGAACTCCGATGGCATAGACACT
GGCATAGTTGCAGGCAGTATTGTAGATGTAGAGGAAGGGGTACTGCGGAT
TGGTGAAGCGCATCATGGCACAGCCCACATGGGTGTTCCTGTCCAGCACG
GTTTCCACAAAGTGTCCATACTTTTCGAGGTCTTTGGTCAGCTTAAAATC
GGTAATGTAACTGCTGTCGATGAGTTTGTGCTCTCCAAACCACAAGCCCA
TCGACTGCTCCACCAGATTGGTCACGTTCAAGTCCCAGTTCCTCCGACGA
TCGACACCGCAGAGATTCTGACCCAGATTCCGGAAGCGGTAGCTGTTGTG
GCAGTCGTCGTGCTCCAGGTAACAGGTTTTCAGGTTCAACGTGGCCAGGT
ACTCCAGCTCCTCATCCCACACCATGGTGGCCATGCGGGTGGCCGGATAG
TAGCCGGGCAAAGATCCAGAGGCAATGTAGTTCCTGCGCTTGTTGTGCTC
ATTCACGATAAGTTTGCGATAAGGCTTCAGGTCCACCATAGTGGCATCCG
GGGAGCAGCTTTCATGGAATTTACCATCGTTATTACACGCTATGTGCACC
GTGTTGTCAGGACATAAGTCCGGATCACACCAGGACAGGGGCTGAGAACT
GGCCATACCCAGGATGATCAACAGACAACCGACCGTTTGAAATCTACCGT
ACTCCATGTCGACTGATAACT
BO15068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-PA | 792 | CG9822-RA | 1..789 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 883 | CG9822-RA | 36..826 | 809..19 | 3955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21347260..21347654 | 278..672 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 21346932..21347190 | 19..277 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 21347712..21347848 | 673..809 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:59:18 has no hits.
BO15068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:23 Download gff for
BO15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..792 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:25 Download gff for
BO15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..792 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:04:21 Download gff for
BO15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 25..831 | 12..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:16:47 Download gff for
BO15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 25..831 | 12..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:16:47 Download gff for
BO15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21346927..21347190 | 12..277 | 98 | <- | Plus |
2R | 21347260..21347654 | 278..672 | 100 | <- | Plus |
2R | 21347712..21347859 | 673..821 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:04:21 Download gff for
BO15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17234432..17234695 | 12..277 | 98 | <- | Plus |
arm_2R | 17234765..17235159 | 278..672 | 100 | <- | Plus |
arm_2R | 17235217..17235364 | 673..821 | 96 | | Plus |
BO15068.5prime Sequence
781 bp (708 high quality bases) assembled on 2006-06-16
> BO15068.5prime
GAAGTTATCAGTCGACATGGAGTACGGTAGATTTCAAACGGTCGGTTGTC
TGTTGATCATCCTGGGTATGGCCAGTTCTCAGCCCCTGTCCTGGTGTGAT
CCGGACTTATGTCCTGACAACACGGTGCACATAGCGTGTAATAACGATGG
TAAATTCCATGAAAGCTGCTCCCCGGATGCCACTATGGTGGACCTGAAGC
CTTATCGCAAACTTATCGTGAATGAGCACAACAAGCGCAGGAACTACATT
GCCTCTGGATCTTTGCCCGGCTACTATCCGGCCACCCGCATGGCCACCAT
GGTGTGGGATGAGGAGCTGGAGTACCTGGCCACGTTGAACCTGAAAACCT
GTTACCTGGAGCACGACGACTGCCACAACAGCTACCGCTTCCGGAATCTG
GGTCAGAATCTCTGCGGTGTCGATCGTCGGAGGAACTGGGACTTGAACGT
GACCAATCTGGTGGAGCAGTCGATGGGCTTGTGGTTTGGAGAGCACAAAC
TCATCGACAGCAGTTACATTACCGATTTTAAGCTGACCAAAGACCTCGAA
AAGTATGGACACTTTGTGGAAACCGTGCTGGACAGGAACACCCATGTGGG
CTGTGCCATGATGCGCTTCACCAATCCGCAGTACCCCTTCCTCTACATCT
ACAATACTGCCTGCAACTATGCCAGTGTCTATGCCATCGGAGTTCCTGTT
TACAATGCCGGAAAGCCCGCCTCTGAATGCCGGACGGGAAGTAATCCAGA
GTATCCCGCACTCTGTTCCCATCAGGAACAA
BO15068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-PA | 792 | CG9822-RA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 883 | CG9822-RA | 36..802 | 15..781 | 3790 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21347260..21347654 | 546..152 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 21346968..21347190 | 769..547 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 21347712..21347848 | 151..15 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:51:28 has no hits.
BO15068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:24 Download gff for
BO15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:26 Download gff for
BO15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..717 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:41 Download gff for
BO15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 25..800 | 3..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:41:48 Download gff for
BO15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 25..800 | 3..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:41:48 Download gff for
BO15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21346958..21347190 | 547..779 | 99 | <- | Minus |
2R | 21347260..21347654 | 152..546 | 100 | <- | Minus |
2R | 21347712..21347859 | 3..151 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:41 Download gff for
BO15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17234463..17234695 | 547..779 | 99 | <- | Minus |
arm_2R | 17234765..17235159 | 152..546 | 100 | <- | Minus |
arm_2R | 17235217..17235364 | 3..151 | 96 | | Minus |
BO15068.complete Sequence
823 bp (823 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633335
> BO15068.complete
GAAGTTATCAGTCGACATGGAGTACGGTAGATTTCAAACGGTCGGTTGTC
TGTTGATCATCCTGGGTATGGCCAGTTCTCAGCCCCTGTCCTGGTGTGAT
CCGGACTTATGTCCTGACAACACGGTGCACATAGCGTGTAATAACGATGG
TAAATTCCATGAAAGCTGCTCCCCGGATGCCACTATGGTGGACCTGAAGC
CTTATCGCAAACTTATCGTGAATGAGCACAACAAGCGCAGGAACTACATT
GCCTCTGGATCTTTGCCCGGCTACTATCCGGCCACCCGCATGGCCACCAT
GGTGTGGGATGAGGAGCTGGAGTACCTGGCCACGTTGAACCTGAAAACCT
GTTACCTGGAGCACGACGACTGCCACAACAGCTACCGCTTCCGGAATCTG
GGTCAGAATCTCTGCGGTGTCGATCGTCGGAGGAACTGGGACTTGAACGT
GACCAATCTGGTGGAGCAGTCGATGGGCTTGTGGTTTGGAGAGCACAAAC
TCATCGACAGCAGTTACATTACCGATTTTAAGCTGACCAAAGACCTCGAA
AAGTATGGACACTTTGTGGAAACCGTGCTGGACAGGAACACCCATGTGGG
CTGTGCCATGATGCGCTTCACCAATCCGCAGTACCCCTTCCTCTACATCT
ACAATACTGCCTGCAACTATGCCAGTGTCTATGCCATCGGAGTTCCTGTT
TACAATGCCGGAAAGCCCGCCTCTGAATGCCGGACGGGAAGTAATCCAGA
GTATCCCGCACTCTGTTCCATCAAGGAACAATACAATCCAAACCACAATT
TCTACGCAAGCTTTCTAGACCAT
BO15068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 792 | CG9822-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 883 | CG9822-RA | 36..826 | 15..805 | 3955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21347260..21347654 | 546..152 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 21346932..21347190 | 805..547 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 21347712..21347848 | 151..15 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:08:46 has no hits.
BO15068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:36 Download gff for
BO15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 1..792 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:04 Download gff for
BO15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 2..799 | 14..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:50 Download gff for
BO15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 38..826 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:36 Download gff for
BO15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 2..797 | 14..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:48 Download gff for
BO15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 38..826 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:48 Download gff for
BO15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21346928..21347190 | 547..807 | 99 | <- | Minus |
2R | 21347260..21347654 | 152..546 | 100 | <- | Minus |
2R | 21347712..21347846 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:50 Download gff for
BO15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17234433..17234695 | 547..807 | 99 | <- | Minus |
arm_2R | 17234765..17235159 | 152..546 | 100 | <- | Minus |
arm_2R | 17235217..17235351 | 17..151 | 100 | | Minus |
BO15068.pep Sequence
Translation from 16 to 823
> BO15068.pep
MEYGRFQTVGCLLIILGMASSQPLSWCDPDLCPDNTVHIACNNDGKFHES
CSPDATMVDLKPYRKLIVNEHNKRRNYIASGSLPGYYPATRMATMVWDEE
LEYLATLNLKTCYLEHDDCHNSYRFRNLGQNLCGVDRRRNWDLNVTNLVE
QSMGLWFGEHKLIDSSYITDFKLTKDLEKYGHFVETVLDRNTHVGCAMMR
FTNPQYPFLYIYNTACNYASVYAIGVPVYNAGKPASECRTGSNPEYPALC
SIKEQYNPNHNFYASFLDH
BO15068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-PA | 263 | CG9822-PA | 1..263 | 1..263 | 1464 | 100 | Plus |
CG17974-PA | 259 | CG17974-PA | 13..258 | 14..259 | 799 | 56.1 | Plus |
CG32679-PA | 254 | CG32679-PA | 14..250 | 12..259 | 436 | 40.6 | Plus |
CG6628-PA | 277 | CG6628-PA | 24..260 | 19..256 | 435 | 41.1 | Plus |
Ag5r-PC | 256 | CG9538-PC | 4..256 | 6..263 | 419 | 36.9 | Plus |