Clone Sequence Records
BO15070.3prime Sequence
905 bp (732 high quality bases) assembled on 2006-06-16
> BO15070.3prime
ATGGTCTAGAAAGCTTGCACATACTAAGCATGTTTGAGTAAACTCCACGA
CTAGTTCAACAAATTGTTCCGGCTGATCCTCATACACACAGTGTCCAGCA
TCCAGAATCTGTACCACTGTATTTGGAAAGTATCTCTGCATCACGGCAAT
ACTGGTCGTGGTCACGAATTCCGACTGGGAACCGGCTATGAGCAAGACTT
CGCCCATGTAGGGACGCAGTCCGCCCAAAGTGGCCTCGTAATTGATCATC
ATCTCCCCCCAGGAGCTTAGGACCGCCTGGGGATTAACTGCCCAGCCAAA
GGTGTTGTCCTGCATCTTGCGCAGATTGTAAATAATGCGACGCAGCTCGG
AGGCGTCGTGGACCACATCCTGGAACAGTGGCAGGATGAACGTACGCCCC
TCGGAAAGTGATAGATTTGAGGGAATACTGGGCGCCACCTGGAGCATCAT
CTCGAACACCTGCCGAGTGAGATAGAAGTTACTGGGCACCGGTGCTGGTG
TGATGTCCACCAGTATGACCCGCTCGACGAGTTGCGGCTGAGTGAGTGCC
AGTGTCATCATTGCCCGACCGCCCATTCCATGTCCAAGTGCAACGATCTT
GTTCAGTCTCTGGTGGCTCATCAGGGCCTCCACGTCGGCGGCCAGGTGCA
TTGGCGAATGCCCGGTTATGTAAGGACTAAGGCCATGATTCCGAGCATCC
ACGGTGATCACCTGGCGCAATCCAACCTGACTGAGGTTAACAGCTACCTG
GCGCCAGGATTCCAGTGACAGATTGAGGTCGTGCATCACCACAATTGGTG
GCGCCTGCATCTGATTGCGCGGCGAGGTGTAGGAGACATACTCCAAACGA
GTGCCCTGGACAAATGACTGGAAGTTTCGCAGCACTTGGGCTCCGCCTTT
GGAAA
BO15070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14717-PA | 921 | CG14717-RA | 79..918 | 858..19 | 4175 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14717-RB | 1819 | CG14717-RB | 169..1055 | 905..19 | 4435 | 100 | Minus |
CG14717-RA | 1154 | CG14717-RA | 169..1055 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11696677..11697563 | 905..19 | 4435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:05:27 has no hits.
BO15070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:27 Download gff for
BO15070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-PA | 72..921 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:30 Download gff for
BO15070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-PA | 72..921 | 16..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:20:29 Download gff for
BO15070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 172..1060 | 14..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:35:59 Download gff for
BO15070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 172..1060 | 14..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:35:59 Download gff for
BO15070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11696680..11697568 | 14..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:20:29 Download gff for
BO15070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7522402..7523290 | 14..902 | 99 | | Minus |
BO15070.5prime Sequence
698 bp (678 high quality bases) assembled on 2006-06-16
> BO15070.5prime
GAAGTTATCAGTCGACATGGCAAGACAGCGACTTCTCGGCTCGATCCTTT
CCAAAGGCGGAGCCCAAGTGCTGCGAAACTTCCAGTCATTTGTCCAGGGC
ACTCGTTTGGAGTATGTCTCCTACACCTCGCCGCGCAATCAGATGCAGGC
GCCACCAATTGTGGTGATGCACGACCTCAATCTGTCACTGGAATCCTGGC
GCCAGGTAGCTGTTAACCTCAGTCAGGTTGGATTGCGCCAGGTGATCACC
GTGGATGCTCGGAATCATGGCCTTAGTCCTTACATAACCGGGCATTCGCC
AATGCACCTGGCCGCCGACGTGGAGGCCCTGATGAGCCACCAGAGACTGA
ACAAGATCGTTGCACTTGGACATGGAATGGGCGGTCGGGCAATGATGACA
CTGGCACTCACTCAGCCGCAACTCGTCGAGCGGGTCATACTGGTGGACAT
CACACCAGCACCGGTGCCCAGTAACTTCTATCTCACTCGGCAGGTGTTCG
AGATGATGCTCCAGGTGGCGCCCAGTATTCCCTCAAATCTATCACTTTCC
GAGGGGCGTACGTTCATCCTGCCACTGTTCCAGGATGTGGTCCACGACGC
CTCCGAGCTGCGTCGCATTATTTACAATCTGCGCAAGATGCAGGACAACA
CCTTTGGCTGGGCAGTTAATCCCCAGGCGGTCCTAAGCTCCTGGGGGG
BO15070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14717-PA | 921 | CG14717-RA | 1..682 | 17..698 | 3410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14717-RB | 1819 | CG14717-RB | 137..819 | 16..698 | 3415 | 100 | Plus |
CG14717-RA | 1154 | CG14717-RA | 137..819 | 16..698 | 3415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11696645..11697327 | 16..698 | 3415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:30:36 has no hits.
BO15070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:28 Download gff for
BO15070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-PA | 1..682 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:32 Download gff for
BO15070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-PA | 1..682 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:08 Download gff for
BO15070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 137..819 | 16..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:07 Download gff for
BO15070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 137..819 | 16..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:43:07 Download gff for
BO15070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11696645..11697327 | 16..698 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:08 Download gff for
BO15070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7522367..7523049 | 16..698 | 100 | | Plus |
BO15070.complete Sequence
952 bp (952 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633337
> BO15070.complete
GAAGTTATCAGTCGACATGGCAAGACAGCGACTTCTCGGCTCGATCCTTT
CCAAAGGCGGAGCCCAAGTGCTGCGAAACTTCCAGTCATTTGTCCAGGGC
ACTCGTTTGGAGTATGTCTCCTACACCTCGCCGCGCAATCAGATGCAGGC
GCCACCAATTGTGGTGATGCACGACCTCAATCTGTCACTGGAATCCTGGC
GCCAGGTAGCTGTTAACCTCAGTCAGGTTGGATTGCGCCAGGTGATCACC
GTGGATGCTCGGAATCATGGCCTTAGTCCTTACATAACCGGGCATTCGCC
AATGCACCTGGCCGCCGACGTGGAGGCCCTGATGAGCCACCAGAGACTGA
ACAAGATCGTTGCACTTGGACATGGAATGGGCGGTCGGGCAATGATGACA
CTGGCACTCACTCAGCCGCAACTCGTCGAGCGGGTCATACTGGTGGACAT
CACACCAGCACCGGTGCCCAGTAACTTCTATCTCACTCGGCAGGTGTTCG
AGATGATGCTCCAGGTGGCGCCCAGTATTCCCTCAAATCTATCACTTTCC
GAGGGGCGTACGTTCATCCTGCCACTGTTCCAGGATGTGGTCCACGACGC
CTCCGAGCTGCGTCGCATTATTTACAATCTGCGCAAGATGCAGGACAACA
CCTTTGGCTGGGCAGTTAATCCCCAGGCGGTCCTAAGCTCCTGGGGGGAG
ATGATGATCAATTACGAGGCCACTTTGGGCGGACTGCGTCCCTACATGGG
CGAAGTCTTGCTCATAGCCGGTTCCCAGTCGGAATTCGTGACCACGACCA
GTATTGCCGTGATGCAGAGATACTTTCCAAATACAGTGGTACAGATTCTG
GATGCTGGACACTGTGTGTATGAGGATCAGCCGGAACAATTTGTTGAACT
AGTCGTGGAGTTTACTCAAACATGCTTAGTATGTGCAAGCTTTCTAGACC
AT
BO15070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14717-RB | 921 | CG14717-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
CG14717-RA | 921 | CG14717-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14717-RB | 1819 | CG14717-RB | 137..1055 | 16..934 | 4595 | 100 | Plus |
CG14717-RA | 1154 | CG14717-RA | 137..1055 | 16..934 | 4595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11696645..11697563 | 16..934 | 4595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:50:17 has no hits.
BO15070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:38 Download gff for
BO15070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:07 Download gff for
BO15070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 137..1060 | 16..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:22 Download gff for
BO15070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 138..1055 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:38 Download gff for
BO15070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 137..1060 | 16..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:13 Download gff for
BO15070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14717-RA | 138..1055 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:13 Download gff for
BO15070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11696646..11697563 | 17..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:22 Download gff for
BO15070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7522368..7523285 | 17..936 | 99 | | Plus |
BO15070.pep Sequence
Translation from 16 to 952
> BO15070.pep
MARQRLLGSILSKGGAQVLRNFQSFVQGTRLEYVSYTSPRNQMQAPPIVV
MHDLNLSLESWRQVAVNLSQVGLRQVITVDARNHGLSPYITGHSPMHLAA
DVEALMSHQRLNKIVALGHGMGGRAMMTLALTQPQLVERVILVDITPAPV
PSNFYLTRQVFEMMLQVAPSIPSNLSLSEGRTFILPLFQDVVHDASELRR
IIYNLRKMQDNTFGWAVNPQAVLSSWGEMMINYEATLGGLRPYMGEVLLI
AGSQSEFVTTTSIAVMQRYFPNTVVQILDAGHCVYEDQPEQFVELVVEFT
QTCLVCASFLDH
BO15070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14717-PB | 306 | CG14717-PB | 1..306 | 1..306 | 1562 | 100 | Plus |
CG14717-PA | 306 | CG14717-PA | 1..306 | 1..306 | 1562 | 100 | Plus |
CG2059-PB | 308 | CG2059-PB | 39..303 | 31..299 | 379 | 33.7 | Plus |
CG2059-PA | 308 | CG2059-PA | 39..303 | 31..299 | 379 | 33.7 | Plus |