Clone Sequence Records
BO15084.3prime Sequence
849 bp (761 high quality bases) assembled on 2006-05-29
> BO15084.3prime
ATGGTCTAGAAAGCTTGCATTCATCTTAAGGTTTGCAAGGTCGGCAACTA
TGTCTATGTTTTGGGGAGGATCATCACATCGGCCGAATCCAATAGTAGCC
GGCCCGCCCGAGCGCTCATCCTCGGAGGCGGAGGCGGAGGCGGAGGGGGA
TGTGGATCCCGTAGGCGACGGTTGTACAAGGGAATCGGCACAAGGCAATT
CCGGTGTCAAAAGGTGCTGGAAGTTGTAGTGCACCCAAGCCCGGTAGTTG
ATGATGGACTGCGGCACCTCTACAATGTTGGCCAGTATGGGGCCGACGAT
CTTGGACGAGTCGGAGTCCACCAGCTTCGAGAGCTTCACGAAGGCTGCCC
CGAATCCCTGCATCACGCCGAGCACCCCATAGGAGCTCCTCCCTATGTCG
TTGGTCGGCGTCACTGGATCCTCTATGCAAAGCACCGACTGCCAGTTGTT
CTCGCCGAGCGTGGAGCGAAGTCGAGCCTTCTCCACGCAACCGCCTTGGC
CGAGGACAGAAATTCCATACTTGAAGAAGTCAAACTTGCGGCCGTAGTAG
TCTAGAAACTGAATGAGCAGCAGGGCCAGCTTACTGTGTTCACTTAAACG
CCTGTTGGAGCGCGCATGCTGCTGCAGAAAGCTGATCACCATTAGCGTGA
GTGCGTAGGACGAGACTCCGCCGGAGTTGTAGACCTCGTTGAATCCGTGA
AGGCTGAGGAACTGCTTGAGCACCATGACCAGTTTGGGTAGTTCGGGAAA
ATGGCGGATAAAGTCCTTGATCAGGTCGGCGGCCTGAACGCCGGATGCTA
CGGGAGTTGAAGGTCCCATCCAAACCTGATGCGGGAAATGAGGCCCGTA
BO15084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17462-PA | 1224 | CG17462-RA | 437..1221 | 803..19 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-RB | 1429 | CG17462-RB | 538..1366 | 849..19 | 4060 | 99.4 | Minus |
Trf4-2-RA | 1870 | CG17462-RA | 748..1576 | 849..19 | 4060 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24925963..24926791 | 849..19 | 4010 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:56:48 has no hits.
BO15084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:38 Download gff for
BO15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-PA | 394..1224 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:47 Download gff for
BO15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-PA | 394..1224 | 15..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:28 Download gff for
BO15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 749..1580 | 14..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:48 Download gff for
BO15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 749..1580 | 14..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:48 Download gff for
BO15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24925964..24926795 | 14..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:28 Download gff for
BO15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20751686..20752517 | 14..848 | 99 | | Minus |
BO15084.complete Sequence
1255 bp (1255 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633339
> BO15084.complete
GAAGTTATCAGTCGACATGTGTGACGAAGCGAATCCAGCGAAGCCGTGGC
AGCTTCCCGATGTGGTGTACGGCAATGGGATTCCGGCGCTGTGCCTGCTG
CACCAGGAGATCGAGCAGTTCTACAACTACATCCGGTCCACGCCAACAGA
GTTCTGCTTGCGGGCAGGTGCAGTGCGTCGCATCGAGGATGTGGTGCTTT
CCATTTGGCCAAGCGCATCCGTCGATCTCTTTGGCTCATTTCGGACCGGG
CTAAATCTGCCGGACTCGGACATTGATCTGGTTGTGTACTATAAGTTCTG
GAACCCCAGGCTGCTGCATGAGCTTCAAAACGAACTAGTCAGCCAAGGAG
TAACTGATCCGGACACTGTGACCGTCCTCGACAAGGCCTCTGTGCCAGTG
GTCAAGTTTACGGACCTCATTTCCCGCATCAGGTTCGATGTGACCTTCAA
CTCCGTAGCATCCGGCGTTCAGGCCGCCGACCTGATCAAGGACTTTATCC
GCCATTTTCCCGAACTACCCAAACTGGTCATGGTGCTCAAGCAGTTCCTC
AGCCTTCACGGATTCAACGAGGTCTACAACTCCGGCGGAGTCTCGTCCTA
CGCACTCACGCTAATGGTGATCAGCTTTCTGCAGCAGCATGCGCGCTCCA
ACAGGCGTTTAAGTGAACACAGTAAGCTGGCCCTGCTGCTCATTCAGTTT
CTAGACTACTACGGCCGCAAGTTTGACTTCTTCAAGTATGGAATTTCTGT
CCTCGGCCAAGGCGGTTGCGTGGAGAAGGCTCGACTTCGCTCCACGCTCG
GCGAGAACAACTGGCAGTCGGTGCTTTGCATAGAGGATCCAGTGACGCCG
ACCAACGACATAGGGAGGAGCTCCTATGGGGTGCTCGGCGTGATGCAGGG
ATTCGGGGCAGCCTTCGTGAAGCTCTCGAAGCTGGTGGACTCCGACTCGT
CCAAGATCGTCGGCCCCATACTGGCCAACATTGTAGAGGTGCCGCAGTCC
ATCATCAACTACCGGGCTTGGGTGCACTACAACTTCCAGCACCTTTTGAC
ACCGGAATTGCCTTGTGCCGATTCCCTTGTACAACCGTCGCCTACGGGAT
CCACATCCCCCTCCGCCTCCGCCTCCGCCTCCGAGGATGAGCGCTCGGGC
GGGCCGGCTACTATTGGATTCGGCCGATGTGATGATCCTCCCCAAAACAT
AGACATAGTTGCCGACCTTGCAAACCTTAAGATGAATGCAAGCTTTCTAG
ACCAT
BO15084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-RB | 1224 | CG17462-PB | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Trf4-2-RA | 1224 | CG17462-PA | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-RB | 1429 | CG17462-RB | 146..1366 | 17..1237 | 6105 | 100 | Plus |
Trf4-2-RA | 1870 | CG17462-RA | 356..1576 | 17..1237 | 6105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24925571..24926791 | 17..1237 | 6105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:29:54 has no hits.
BO15084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:25 Download gff for
BO15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-RA | 1..1224 | 17..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:49 Download gff for
BO15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-RA | 267..1491 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:49 Download gff for
BO15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 356..1576 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:25 Download gff for
BO15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-RA | 267..1491 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:23 Download gff for
BO15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 356..1576 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:23 Download gff for
BO15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24925571..24926791 | 17..1239 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:49 Download gff for
BO15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20751293..20752513 | 17..1239 | 99 | | Plus |
BO15084.pep Sequence
Translation from 16 to 1255
> BO15084.pep
MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA
GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL
HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG
VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM
VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG
CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF
VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC
ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD
LANLKMNASFLDH
BO15084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-PB | 407 | CG17462-PB | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-2-PA | 407 | CG17462-PA | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-1-PG | 802 | CG11265-PG | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PF | 802 | CG11265-PF | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PJ | 1001 | CG11265-PJ | 255..608 | 9..372 | 772 | 45.9 | Plus |