Clone BO15084 Report

Search the DGRC for BO15084

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:150
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptTrf4-2-RA
Protein status:BO15084.pep: validated full length
Sequenced Size:1255

Clone Sequence Records

BO15084.3prime Sequence

849 bp (761 high quality bases) assembled on 2006-05-29

> BO15084.3prime
ATGGTCTAGAAAGCTTGCATTCATCTTAAGGTTTGCAAGGTCGGCAACTA
TGTCTATGTTTTGGGGAGGATCATCACATCGGCCGAATCCAATAGTAGCC
GGCCCGCCCGAGCGCTCATCCTCGGAGGCGGAGGCGGAGGCGGAGGGGGA
TGTGGATCCCGTAGGCGACGGTTGTACAAGGGAATCGGCACAAGGCAATT
CCGGTGTCAAAAGGTGCTGGAAGTTGTAGTGCACCCAAGCCCGGTAGTTG
ATGATGGACTGCGGCACCTCTACAATGTTGGCCAGTATGGGGCCGACGAT
CTTGGACGAGTCGGAGTCCACCAGCTTCGAGAGCTTCACGAAGGCTGCCC
CGAATCCCTGCATCACGCCGAGCACCCCATAGGAGCTCCTCCCTATGTCG
TTGGTCGGCGTCACTGGATCCTCTATGCAAAGCACCGACTGCCAGTTGTT
CTCGCCGAGCGTGGAGCGAAGTCGAGCCTTCTCCACGCAACCGCCTTGGC
CGAGGACAGAAATTCCATACTTGAAGAAGTCAAACTTGCGGCCGTAGTAG
TCTAGAAACTGAATGAGCAGCAGGGCCAGCTTACTGTGTTCACTTAAACG
CCTGTTGGAGCGCGCATGCTGCTGCAGAAAGCTGATCACCATTAGCGTGA
GTGCGTAGGACGAGACTCCGCCGGAGTTGTAGACCTCGTTGAATCCGTGA
AGGCTGAGGAACTGCTTGAGCACCATGACCAGTTTGGGTAGTTCGGGAAA
ATGGCGGATAAAGTCCTTGATCAGGTCGGCGGCCTGAACGCCGGATGCTA
CGGGAGTTGAAGGTCCCATCCAAACCTGATGCGGGAAATGAGGCCCGTA

BO15084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17462-PA 1224 CG17462-RA 437..1221 803..19 3925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1429 CG17462-RB 538..1366 849..19 4060 99.4 Minus
Trf4-2-RA 1870 CG17462-RA 748..1576 849..19 4060 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24925963..24926791 849..19 4010 99.4 Minus
Blast to na_te.dros performed on 2015-02-10 22:56:48 has no hits.

BO15084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:38 Download gff for BO15084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17462-PA 394..1224 15..848 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:47 Download gff for BO15084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17462-PA 394..1224 15..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:28 Download gff for BO15084.3prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 749..1580 14..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:48 Download gff for BO15084.3prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 749..1580 14..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:48 Download gff for BO15084.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24925964..24926795 14..848 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:28 Download gff for BO15084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20751686..20752517 14..848 99   Minus

BO15084.complete Sequence

1255 bp (1255 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633339

> BO15084.complete
GAAGTTATCAGTCGACATGTGTGACGAAGCGAATCCAGCGAAGCCGTGGC
AGCTTCCCGATGTGGTGTACGGCAATGGGATTCCGGCGCTGTGCCTGCTG
CACCAGGAGATCGAGCAGTTCTACAACTACATCCGGTCCACGCCAACAGA
GTTCTGCTTGCGGGCAGGTGCAGTGCGTCGCATCGAGGATGTGGTGCTTT
CCATTTGGCCAAGCGCATCCGTCGATCTCTTTGGCTCATTTCGGACCGGG
CTAAATCTGCCGGACTCGGACATTGATCTGGTTGTGTACTATAAGTTCTG
GAACCCCAGGCTGCTGCATGAGCTTCAAAACGAACTAGTCAGCCAAGGAG
TAACTGATCCGGACACTGTGACCGTCCTCGACAAGGCCTCTGTGCCAGTG
GTCAAGTTTACGGACCTCATTTCCCGCATCAGGTTCGATGTGACCTTCAA
CTCCGTAGCATCCGGCGTTCAGGCCGCCGACCTGATCAAGGACTTTATCC
GCCATTTTCCCGAACTACCCAAACTGGTCATGGTGCTCAAGCAGTTCCTC
AGCCTTCACGGATTCAACGAGGTCTACAACTCCGGCGGAGTCTCGTCCTA
CGCACTCACGCTAATGGTGATCAGCTTTCTGCAGCAGCATGCGCGCTCCA
ACAGGCGTTTAAGTGAACACAGTAAGCTGGCCCTGCTGCTCATTCAGTTT
CTAGACTACTACGGCCGCAAGTTTGACTTCTTCAAGTATGGAATTTCTGT
CCTCGGCCAAGGCGGTTGCGTGGAGAAGGCTCGACTTCGCTCCACGCTCG
GCGAGAACAACTGGCAGTCGGTGCTTTGCATAGAGGATCCAGTGACGCCG
ACCAACGACATAGGGAGGAGCTCCTATGGGGTGCTCGGCGTGATGCAGGG
ATTCGGGGCAGCCTTCGTGAAGCTCTCGAAGCTGGTGGACTCCGACTCGT
CCAAGATCGTCGGCCCCATACTGGCCAACATTGTAGAGGTGCCGCAGTCC
ATCATCAACTACCGGGCTTGGGTGCACTACAACTTCCAGCACCTTTTGAC
ACCGGAATTGCCTTGTGCCGATTCCCTTGTACAACCGTCGCCTACGGGAT
CCACATCCCCCTCCGCCTCCGCCTCCGCCTCCGAGGATGAGCGCTCGGGC
GGGCCGGCTACTATTGGATTCGGCCGATGTGATGATCCTCCCCAAAACAT
AGACATAGTTGCCGACCTTGCAAACCTTAAGATGAATGCAAGCTTTCTAG
ACCAT

BO15084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1224 CG17462-PB 1..1221 17..1237 6105 100 Plus
Trf4-2-RA 1224 CG17462-PA 1..1221 17..1237 6105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1429 CG17462-RB 146..1366 17..1237 6105 100 Plus
Trf4-2-RA 1870 CG17462-RA 356..1576 17..1237 6105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24925571..24926791 17..1237 6105 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:29:54 has no hits.

BO15084.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:25 Download gff for BO15084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 1..1224 17..1241 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:49 Download gff for BO15084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 267..1491 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:49 Download gff for BO15084.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1576 17..1239 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:25 Download gff for BO15084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 267..1491 17..1242 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:23 Download gff for BO15084.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1576 17..1239 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:23 Download gff for BO15084.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24925571..24926791 17..1239 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:49 Download gff for BO15084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20751293..20752513 17..1239 99   Plus

BO15084.pep Sequence

Translation from 16 to 1255

> BO15084.pep
MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA
GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL
HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG
VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM
VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG
CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF
VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC
ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD
LANLKMNASFLDH

BO15084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-PB 407 CG17462-PB 1..407 1..407 2116 100 Plus
Trf4-2-PA 407 CG17462-PA 1..407 1..407 2116 100 Plus
Trf4-1-PG 802 CG11265-PG 56..409 9..372 772 45.9 Plus
Trf4-1-PF 802 CG11265-PF 56..409 9..372 772 45.9 Plus
Trf4-1-PJ 1001 CG11265-PJ 255..608 9..372 772 45.9 Plus