Clone BO15085 Report

Search the DGRC for BO15085

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:150
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG6788-RA
Protein status:BO15085.pep: validated full length
Sequenced Size:1108

Clone Sequence Records

BO15085.5prime Sequence

817 bp (718 high quality bases) assembled on 2006-05-29

> BO15085.5prime
GAAGTTATCAGTCGACATGTTCAGGATAATGAAAACCGCATACCTCATCC
TGATTCTTTCGCTCTCGATATCCACTTCCTTGGCTAACGATCCGCAGAGG
TCCTTCGATCAGAATGCGGACAATCCGTGCAGTGCTCACCGCATTTGGGT
TTGGAGACCCATCCTCGATCGATTCGCCAAGGTGAACTCCAGCGATGAGC
TGAAGAACCAGGTCAACGCCATGTCGGAAACCATCAAGGACCTGCAGACG
CGCATTGGCCACAAGAACGAGCTGCTCCTGCTGCAAGCCGGTCAGATCAA
GGACCAAAGTGCCAGGCTCAACGTTTTGATCAAAAACATGAAAGTCCTTC
GAAGTGAGTGTCTGAATGCCCAGGCGGAGATCAAAAGCAAGGACATACAA
ATACAATTGAGCGCGGCAAAGATCAAGCAAATGAGCAACGAACTGGTGAC
GCAGTGCAGCCGCCAGGACACGTGTCCCATCGACGGCAAAGGTGGCATCT
ATAAGCTGAAGATCCGTGAATTGCCAGCATTCGAGGCGCCGTGCAGTTCC
AACGGCTGGTTGACCATACAGAAACGATACGATGGCGCCGAGAACTTCGA
TCGCGGTTGGAAGGACTACAAGGATGGTTTCGGACGCGTGAGAGGTGAGT
TTTTCATCGGCCTGGAGAAAGTGCACCTTATGACGCGGCAACGACGCCAC
GAACTGTACATTAAGCTGGGCAAGATTGATGGCACCACTAGCCACGCCCA
CTACGACAACTTCGAACTCGGCGGCGAGATTGAATCCTATGAGCTAAAGT
CACTGGGCCGCTACCAT

BO15085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-PA 1077 CG6788-RA 1..798 17..814 3990 100 Plus
CG32496-PA 756 CG32496-RA 1..477 338..814 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-RA 1150 CG6788-RA 12..810 16..814 3995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17888188..17888986 16..814 3995 100 Plus
X 23542271 X 17898637..17899141 310..814 2525 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:01:53 has no hits.

BO15085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:39 Download gff for BO15085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6788-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:48 Download gff for BO15085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6788-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:56 Download gff for BO15085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..813 4..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:12 Download gff for BO15085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..813 4..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:12 Download gff for BO15085.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17888181..17888989 9..817 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:56 Download gff for BO15085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17782214..17783022 9..817 99   Plus

BO15085.complete Sequence

1108 bp (1108 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633340

> BO15085.complete
GAAGTTATCAGTCGACATGTTCAGGATAATGAAAACCGCATACCTCATCC
TGATTCTTTCGCTCTCGATATCCACTTCCTTGGCTAACGATCCGCAGAGG
TCCTTCGATCAGAATGCGGACAATCCGTGCAGTGCTCACCGCATTTGGGT
TTGGAGACCCATCCTCGATCGATTCGCCAAGGTGAACTCCAGCGATGAGC
TGAAGAACCAGGTCAACGCCATGTCGGAAACCATCAAGGACCTGCAGACG
CGCATTGGCCACAAGAACGAGCTGCTCCTGCTGCAAGCCGGTCAGATCAA
GGACCAAAGTGCCAGGCTCAACGTTTTGATCAAAAACATGAAAGTCCTTC
GAAGTGAGTGTCTGAATGCCCAGGCGGAGATCAAAAGCAAGGACATACAA
ATACAATTGAGCGCGGCAAAGATCAAGCAAATGAGCAACGAACTGGTGAC
GCAGTGCAGCCGCCAGGACACGTGTCCCATCGACGGCAAAGGTGGCATCT
ATAAGCTGAAGATCCGTGAATTGCCAGCATTCGAGGCGCCGTGCAGTTCC
AACGGCTGGTTGACCATACAGAAACGATACGATGGCGCCGAGAACTTCGA
TCGCGGTTGGAAGGACTACAAGGATGGTTTCGGACGCGTGAGAGGTGAGT
TTTTCATCGGCCTGGAGAAAGTGCACCTTATGACGCGGCAACGACGCCAC
GAACTGTACATTAAGCTGGGCAAGATTGATGGCACCACTAGCCACGCCCA
CTACGACAACTTCGAACTCGGCGGCGAGATTGAATCCTATGAGCTAAAGT
CACTGGGCCGCTACAATGGCACAGCCGGCGATTCTCTGCGGCCACATGAG
CGCCAAAAGTTCACCACCAACGACAAGGACAACGATGCCTATCGGTTCAA
CTGTGCCGCCGACGAATATGGTGGCTGGTGGTACTACGATTGCGCCAAGA
GCATGCTCAATGGCAAGTTCTACAAGGAGGGCCGCTCGCGGAATGGAAAA
ACCAATGGCATCCTGTGGGGCTCCTGGCACAACAACGATTGGACCTACTC
GCTAACCTTCGTGGAGATGATGATAAGGCCGCGAATAGATGCAAGCTTTC
TAGACCAT

BO15085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-RA 1077 CG6788-PA 1..1074 17..1090 5370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-RA 1150 CG6788-RA 12..1086 16..1090 5375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17888188..17889123 16..951 4680 100 Plus
X 23542271 X 17898637..17899278 310..951 3210 100 Plus
X 23542271 X 17889200..17889340 950..1090 705 100 Plus
X 23542271 X 17899355..17899495 950..1090 705 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:44:03 has no hits.

BO15085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:26 Download gff for BO15085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1077 17..1091 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:51 Download gff for BO15085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1095 4..1102 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:32 Download gff for BO15085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 18..1086 22..1092 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:26 Download gff for BO15085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 1..1095 4..1102 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:34 Download gff for BO15085.complete
Subject Subject Range Query Range Percent Splice Strand
CG6788-RA 18..1086 22..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:34 Download gff for BO15085.complete
Subject Subject Range Query Range Percent Splice Strand
X 17888194..17889123 22..951 100 -> Plus
X 17889202..17889340 952..1092 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:32 Download gff for BO15085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17783235..17783373 952..1092 98   Plus
arm_X 17782227..17783156 22..951 100 -> Plus

BO15085.pep Sequence

Translation from 16 to 1108

> BO15085.pep
MFRIMKTAYLILILSLSISTSLANDPQRSFDQNADNPCSAHRIWVWRPIL
DRFAKVNSSDELKNQVNAMSETIKDLQTRIGHKNELLLLQAGQIKDQSAR
LNVLIKNMKVLRSECLNAQAEIKSKDIQIQLSAAKIKQMSNELVTQCSRQ
DTCPIDGKGGIYKLKIRELPAFEAPCSSNGWLTIQKRYDGAENFDRGWKD
YKDGFGRVRGEFFIGLEKVHLMTRQRRHELYIKLGKIDGTTSHAHYDNFE
LGGEIESYELKSLGRYNGTAGDSLRPHERQKFTTNDKDNDAYRFNCAADE
YGGWWYYDCAKSMLNGKFYKEGRSRNGKTNGILWGSWHNNDWTYSLTFVE
MMIRPRIDASFLDH

BO15085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6788-PA 358 CG6788-PA 1..358 1..358 1914 100 Plus
CG31832-PB 227 CG31832-PB 20..225 148..356 525 46.7 Plus
CG8642-PB 429 CG8642-PB 106..420 55..363 483 36.3 Plus
CG30280-PB 272 CG30280-PB 11..263 104..356 472 36.7 Plus
CG30281-PA 291 CG30281-PA 8..274 86..356 427 34.6 Plus