Clone Sequence Records
BO15085.5prime Sequence
817 bp (718 high quality bases) assembled on 2006-05-29
> BO15085.5prime
GAAGTTATCAGTCGACATGTTCAGGATAATGAAAACCGCATACCTCATCC
TGATTCTTTCGCTCTCGATATCCACTTCCTTGGCTAACGATCCGCAGAGG
TCCTTCGATCAGAATGCGGACAATCCGTGCAGTGCTCACCGCATTTGGGT
TTGGAGACCCATCCTCGATCGATTCGCCAAGGTGAACTCCAGCGATGAGC
TGAAGAACCAGGTCAACGCCATGTCGGAAACCATCAAGGACCTGCAGACG
CGCATTGGCCACAAGAACGAGCTGCTCCTGCTGCAAGCCGGTCAGATCAA
GGACCAAAGTGCCAGGCTCAACGTTTTGATCAAAAACATGAAAGTCCTTC
GAAGTGAGTGTCTGAATGCCCAGGCGGAGATCAAAAGCAAGGACATACAA
ATACAATTGAGCGCGGCAAAGATCAAGCAAATGAGCAACGAACTGGTGAC
GCAGTGCAGCCGCCAGGACACGTGTCCCATCGACGGCAAAGGTGGCATCT
ATAAGCTGAAGATCCGTGAATTGCCAGCATTCGAGGCGCCGTGCAGTTCC
AACGGCTGGTTGACCATACAGAAACGATACGATGGCGCCGAGAACTTCGA
TCGCGGTTGGAAGGACTACAAGGATGGTTTCGGACGCGTGAGAGGTGAGT
TTTTCATCGGCCTGGAGAAAGTGCACCTTATGACGCGGCAACGACGCCAC
GAACTGTACATTAAGCTGGGCAAGATTGATGGCACCACTAGCCACGCCCA
CTACGACAACTTCGAACTCGGCGGCGAGATTGAATCCTATGAGCTAAAGT
CACTGGGCCGCTACCAT
BO15085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6788-PA | 1077 | CG6788-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG32496-PA | 756 | CG32496-RA | 1..477 | 338..814 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6788-RA | 1150 | CG6788-RA | 12..810 | 16..814 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17888188..17888986 | 16..814 | 3995 | 100 | Plus |
X | 23542271 | X | 17898637..17899141 | 310..814 | 2525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:01:53 has no hits.
BO15085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:39 Download gff for
BO15085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:48 Download gff for
BO15085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:56 Download gff for
BO15085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-RA | 1..813 | 4..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:12 Download gff for
BO15085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-RA | 1..813 | 4..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:12 Download gff for
BO15085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17888181..17888989 | 9..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:56 Download gff for
BO15085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17782214..17783022 | 9..817 | 99 | | Plus |
BO15085.complete Sequence
1108 bp (1108 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633340
> BO15085.complete
GAAGTTATCAGTCGACATGTTCAGGATAATGAAAACCGCATACCTCATCC
TGATTCTTTCGCTCTCGATATCCACTTCCTTGGCTAACGATCCGCAGAGG
TCCTTCGATCAGAATGCGGACAATCCGTGCAGTGCTCACCGCATTTGGGT
TTGGAGACCCATCCTCGATCGATTCGCCAAGGTGAACTCCAGCGATGAGC
TGAAGAACCAGGTCAACGCCATGTCGGAAACCATCAAGGACCTGCAGACG
CGCATTGGCCACAAGAACGAGCTGCTCCTGCTGCAAGCCGGTCAGATCAA
GGACCAAAGTGCCAGGCTCAACGTTTTGATCAAAAACATGAAAGTCCTTC
GAAGTGAGTGTCTGAATGCCCAGGCGGAGATCAAAAGCAAGGACATACAA
ATACAATTGAGCGCGGCAAAGATCAAGCAAATGAGCAACGAACTGGTGAC
GCAGTGCAGCCGCCAGGACACGTGTCCCATCGACGGCAAAGGTGGCATCT
ATAAGCTGAAGATCCGTGAATTGCCAGCATTCGAGGCGCCGTGCAGTTCC
AACGGCTGGTTGACCATACAGAAACGATACGATGGCGCCGAGAACTTCGA
TCGCGGTTGGAAGGACTACAAGGATGGTTTCGGACGCGTGAGAGGTGAGT
TTTTCATCGGCCTGGAGAAAGTGCACCTTATGACGCGGCAACGACGCCAC
GAACTGTACATTAAGCTGGGCAAGATTGATGGCACCACTAGCCACGCCCA
CTACGACAACTTCGAACTCGGCGGCGAGATTGAATCCTATGAGCTAAAGT
CACTGGGCCGCTACAATGGCACAGCCGGCGATTCTCTGCGGCCACATGAG
CGCCAAAAGTTCACCACCAACGACAAGGACAACGATGCCTATCGGTTCAA
CTGTGCCGCCGACGAATATGGTGGCTGGTGGTACTACGATTGCGCCAAGA
GCATGCTCAATGGCAAGTTCTACAAGGAGGGCCGCTCGCGGAATGGAAAA
ACCAATGGCATCCTGTGGGGCTCCTGGCACAACAACGATTGGACCTACTC
GCTAACCTTCGTGGAGATGATGATAAGGCCGCGAATAGATGCAAGCTTTC
TAGACCAT
BO15085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6788-RA | 1077 | CG6788-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6788-RA | 1150 | CG6788-RA | 12..1086 | 16..1090 | 5375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17888188..17889123 | 16..951 | 4680 | 100 | Plus |
X | 23542271 | X | 17898637..17899278 | 310..951 | 3210 | 100 | Plus |
X | 23542271 | X | 17889200..17889340 | 950..1090 | 705 | 100 | Plus |
X | 23542271 | X | 17899355..17899495 | 950..1090 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:44:03 has no hits.
BO15085.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:26 Download gff for
BO15085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-RA | 1..1077 | 17..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:51 Download gff for
BO15085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-RA | 1..1095 | 4..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:32 Download gff for
BO15085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-RA | 18..1086 | 22..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:26 Download gff for
BO15085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-RA | 1..1095 | 4..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:34 Download gff for
BO15085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6788-RA | 18..1086 | 22..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:34 Download gff for
BO15085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17888194..17889123 | 22..951 | 100 | -> | Plus |
X | 17889202..17889340 | 952..1092 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:32 Download gff for
BO15085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17783235..17783373 | 952..1092 | 98 | | Plus |
arm_X | 17782227..17783156 | 22..951 | 100 | -> | Plus |
BO15085.pep Sequence
Translation from 16 to 1108
> BO15085.pep
MFRIMKTAYLILILSLSISTSLANDPQRSFDQNADNPCSAHRIWVWRPIL
DRFAKVNSSDELKNQVNAMSETIKDLQTRIGHKNELLLLQAGQIKDQSAR
LNVLIKNMKVLRSECLNAQAEIKSKDIQIQLSAAKIKQMSNELVTQCSRQ
DTCPIDGKGGIYKLKIRELPAFEAPCSSNGWLTIQKRYDGAENFDRGWKD
YKDGFGRVRGEFFIGLEKVHLMTRQRRHELYIKLGKIDGTTSHAHYDNFE
LGGEIESYELKSLGRYNGTAGDSLRPHERQKFTTNDKDNDAYRFNCAADE
YGGWWYYDCAKSMLNGKFYKEGRSRNGKTNGILWGSWHNNDWTYSLTFVE
MMIRPRIDASFLDH
BO15085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6788-PA | 358 | CG6788-PA | 1..358 | 1..358 | 1914 | 100 | Plus |
CG31832-PB | 227 | CG31832-PB | 20..225 | 148..356 | 525 | 46.7 | Plus |
CG8642-PB | 429 | CG8642-PB | 106..420 | 55..363 | 483 | 36.3 | Plus |
CG30280-PB | 272 | CG30280-PB | 11..263 | 104..356 | 472 | 36.7 | Plus |
CG30281-PA | 291 | CG30281-PA | 8..274 | 86..356 | 427 | 34.6 | Plus |