Clone Sequence Records
BO15090.3prime Sequence
855 bp (653 high quality bases) assembled on 2006-05-29
> BO15090.3prime
ATGGTCTAGAAAGCTTGCCTGGTTGATGGTGGGAATGGTGCCGTCGTTCA
GCCAACGGACGTTGAGCTGCTCGATCTGGTGCTTCATAAAGATGATGCCG
TACACCTCGTACTGGATCTCCAGCAGCTGGGCGCGATGCGTCCGGGGCAC
CTTCATGCCCACCACGAGTGCCAGCAGCGAGGTGATGATGAGAAAGACGA
ATCCCTGGGCCATCAGAGTGCTCGAGTCGGTGGCATAGAAGTAGGAGTTC
TTCGCATCCGCCACAAAGTAGAAGTACACGATGCTGGTGCAGATCAACTT
GAGCACATACGAGATGCATATGATGCATTCGGTGAAGCGCAGATGGGTGA
CCTCCAGCAGGAGAATCTGCTGCTGCGAGTACGACAGGCCAAAGAGCACA
AGGAGCAGCCAGAGCGACCACCTGGAGTCCGTAACGCTGCAGAGGATCAT
GGCCAGCAGAGTGAAGGAGATGAGGGCCACCTGCGAGCCCACAAAGGTGA
CCTTCACCGACAGGAACCACTGGCAGATGAGGGCCAGCAGGCTGCCCGCA
AAGATCACCCAGAACATGCCGTCGATGCCGGAGAACTCTGTCAGCCGGAT
GGCCGGATTAAGGGCAAACCAGTAGACAAAGTACACGAACAGGGCGAACT
GCACGGCCTCCGTGAAGAGGAGCAGTAGCATTATGTTCCACTGCTGGTTC
TTGGTCACGTAAAAGAACTGCAGTCGCTTGATGACCTCCGATCGCTGCTC
GAAGATGCTGCCATTCGAGTTGGCGATCCGCAGGTCGTTGTCCCTGCTGT
TCACCAGGTCGACGGTGCCCAAAAAGTGGAGCCACTTCTGGGCCCACCAA
AATGG
BO15090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-PA | 1443 | CG7992-RA | 627..1440 | 832..19 | 3995 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-RA | 1693 | CG7992-RA | 741..1576 | 855..19 | 4070 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19245275..19246110 | 19..855 | 4045 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:56:27 has no hits.
BO15090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:40 Download gff for
BO15090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-PA | 605..1443 | 16..855 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:50 Download gff for
BO15090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-PA | 605..1443 | 16..855 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:26 Download gff for
BO15090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 741..1581 | 13..855 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:19 Download gff for
BO15090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 741..1581 | 13..855 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:19 Download gff for
BO15090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19245270..19246110 | 13..855 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:26 Download gff for
BO15090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19139303..19140143 | 13..855 | 98 | | Plus |
BO15090.5prime Sequence
834 bp (694 high quality bases) assembled on 2006-06-16
> BO15090.5prime
GAAGTTATCAGTCGACATGTCGAATGTGTGGGGCAAACTGGTGCTGAAGT
TCTTTAAATATGCGCCCAGCTATGTGGTCTGCCTGTGCTTCCTGCCCTGC
GGCATGATCTTTGGCTATACGATCTGCGCCTTTGTTGCGGAGCGGAACCT
CAACGCTGGACTCATTCACTATGGACCATTGATTCTGGGCGCCTGCTGGG
CGTTGATCACTGCCCTGGCCATGCTGACGGTCAAGTTCGTGAAGAAGTGC
ATCGTCTACTGGCAGCCATGGCTGCTCCTGGCAGCCGGAGTCTTTAATCT
CATAGGCAGCTGCTTCTACTTTGCCGATGGATTTGACCACGTCGGAGCCT
ATATATCGTACTTGGCGCACAGCATGACCTTCGTGGCCGGCTATAGCTTC
CTGCTCACGATCAGCTCCAAGGGCAGCAGGTCGCTGTTCCTCTCGGGCAG
CTGCAGCTGCTACCTGCTGGGCGTGGCGTCCGCCGTCAGCCTGATCGTGG
CCTCCTACAGCCGGAATGTAAAGGAGCTGGCCGGACAGACGGTGACCACG
GAGCAACTGATCGATGGCATCTATGTAAACTTCGCCGGCACCTACTTGAG
TGTGGCGGCCGCCGTGTTGGCCATTCTGGTGGGCCAGAAGGTGCTCCACT
TTCTGGGCACCGTCGACCTGGTGAACAGCATGGACAACGACCTGCGGATC
GCCAACTCGAATGGCAGCTTCTTCGAGCAGCGATCGGAGGGCATCAAGCG
ACTGCAGTTCTTCTACGTGACCAAGAACCAGCAGTGGAACATAATGCTAC
TGCTCCTCTTCACGGAGGCCGTGCAGTTCGCCCT
BO15090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-PA | 1443 | CG7992-RA | 1..818 | 17..834 | 4040 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-RA | 1693 | CG7992-RA | 137..954 | 17..834 | 4060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19245897..19246396 | 834..335 | 2470 | 99.6 | Minus |
| X | 23542271 | X | 19246737..19246995 | 335..77 | 1295 | 100 | Minus |
| X | 23542271 | X | 19247054..19247114 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:56:05 has no hits.
BO15090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:40 Download gff for
BO15090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:42:51 Download gff for
BO15090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-PA | 1..818 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:16 Download gff for
BO15090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 137..954 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:33 Download gff for
BO15090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 137..954 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:33 Download gff for
BO15090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19245897..19246395 | 336..834 | 99 | <- | Minus |
| X | 19246737..19246994 | 78..335 | 100 | <- | Minus |
| X | 19247054..19247114 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:16 Download gff for
BO15090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19139930..19140428 | 336..834 | 99 | <- | Minus |
| arm_X | 19140770..19141027 | 78..335 | 100 | <- | Minus |
| arm_X | 19141087..19141147 | 17..77 | 100 | | Minus |
BO15090.complete Sequence
1474 bp (1474 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633341
> BO15090.complete
GAAGTTATCAGTCGACATGTCGAATGTGTGGGGCAAACTGGTGCTGAAGT
TCTTTAAATATGCGCCCAGCTATGTGGTCTGCCTGTGCTTCCTGCCCTGC
GGCATGATCTTTGGCTATACGATCTGCGCCTTTGTTGCGGAGCGGAACCT
CAACGCTGGACTCATTCACTATGGACCATTGATTCTGGGCGCCTGCTGGG
CGTTGATCACTGCCCTGGCCATGCTGACGGTCAAGTTCGTGAAGAAGTGC
ATCGTCTACTGGCAGCCATGGCTGCTCCTGGCAGCCGGAGTCTTTAATCT
CATAGGCAGCTGCTTCTACTTTGCCGATGGATTTGACCACGTCGGAGCCT
ATATATCGTACTTGGCGCACAGCATGACCTTCGTGGCCGGCTATAGCTTC
CTGCTCACGATCAGCTCCAAGGGCAGCAGGTCGCTGTTCCTCTCGGGCAG
CTGCAGCTGCTACCTGCTGGGCGTGGCGTCCGCCGTCAGCCTGATCGTGG
CCTCCTACAGCCGGAATGTAAAGGAGCTGGCCGGACAGACGGTGACCACG
GAGCAACTGATCGATGGCATCTATGTAAACTTCGCCGGCACCTACTTGAG
TGTGGCGGCCGCCGTGTTGGCCATTCTGGTGGGCCAGAAGGTGCTCCACT
TTCTGGGCACCGTCGACCTGGTGAACAGCATGGACAACGACCTGCGGATC
GCCAACTCGAATGGCAGCATCTTCGAGCAGCGATCGGAGGTCATCAAGCG
ACTGCAGTTCTTCTACGTGACCAAGAACCAGCAGTGGAACATAATGCTAC
TGCTCCTCTTCACGGAGGCCGTGCAGTTCGCCCTGTTCGTGTACTTTGTC
TACTGGTTTGCCCTTAATCCGGCCATCCGGCTGACAGAGTTCTCCGGCAT
CGACGGCATGTTCTGGGTGATCTTTGCGGGCAGCCTGCTGGCCCTCATCT
GCCAGTGGTTCCTGTCGGTGAAGGTCACCTTTGTGGGCTCGCAGGTGGCC
CTCATCTCCTTCACTCTGCTGGCCATGATCCTCTGCAGCGTTACGGACTC
CAGGTGGTCGCTCTGGCTGCTCCTTGTGCTCTTTGGCCTGTCGTACTCGC
AGCAGCAGATTCTCCTGCTGGAGGTCACCCATCTGCGCTTCACCGAATGC
ATCATATGCATCTCGTATGTGCTCAAGTTGATCTGCACCAGCATCGTGTA
CTTCTACTTTGTGGCGGATGCGAAGAACTCCTACTTCTATGCCACCGACT
CGAGCACTCTGATGGCCCAGGGATTCGTCTTTCTCATCATCACCTCGCTG
CTGGCACTCGTGGTGGGCATGAAGGTGCCCCGGACGCATCGCGCCCAGCT
GCTGGAGATCCAGTACGAGGTGTACGGCATCATCTTTATGAAGCACCAGA
TCGAGCAGCTCAACGTCCGTTGGCTGAACGACGGCACCATTCCCACCATC
AACCAGGCAAGCTTTCTAGACCAT
BO15090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-RA | 1443 | CG7992-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-RA | 1693 | CG7992-RA | 137..1576 | 17..1456 | 7200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19245275..19246396 | 1456..335 | 5610 | 100 | Minus |
| X | 23542271 | X | 19246737..19246995 | 335..77 | 1295 | 100 | Minus |
| X | 23542271 | X | 19247054..19247114 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:37:37 has no hits.
BO15090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:40 Download gff for
BO15090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 1..1443 | 17..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:06 Download gff for
BO15090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 106..1550 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:33 Download gff for
BO15090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 137..1576 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:40 Download gff for
BO15090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 106..1550 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:30 Download gff for
BO15090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7992-RA | 137..1576 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:30 Download gff for
BO15090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19245272..19246395 | 336..1458 | 99 | <- | Minus |
| X | 19246737..19246994 | 78..335 | 100 | <- | Minus |
| X | 19247054..19247114 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:33 Download gff for
BO15090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19140770..19141027 | 78..335 | 100 | <- | Minus |
| arm_X | 19139305..19140428 | 336..1458 | 99 | <- | Minus |
| arm_X | 19141087..19141147 | 17..77 | 100 | | Minus |
BO15090.pep Sequence
Translation from 16 to 1474
> BO15090.pep
MSNVWGKLVLKFFKYAPSYVVCLCFLPCGMIFGYTICAFVAERNLNAGLI
HYGPLILGACWALITALAMLTVKFVKKCIVYWQPWLLLAAGVFNLIGSCF
YFADGFDHVGAYISYLAHSMTFVAGYSFLLTISSKGSRSLFLSGSCSCYL
LGVASAVSLIVASYSRNVKELAGQTVTTEQLIDGIYVNFAGTYLSVAAAV
LAILVGQKVLHFLGTVDLVNSMDNDLRIANSNGSIFEQRSEVIKRLQFFY
VTKNQQWNIMLLLLFTEAVQFALFVYFVYWFALNPAIRLTEFSGIDGMFW
VIFAGSLLALICQWFLSVKVTFVGSQVALISFTLLAMILCSVTDSRWSLW
LLLVLFGLSYSQQQILLLEVTHLRFTECIICISYVLKLICTSIVYFYFVA
DAKNSYFYATDSSTLMAQGFVFLIITSLLALVVGMKVPRTHRAQLLEIQY
EVYGIIFMKHQIEQLNVRWLNDGTIPTINQASFLDH
BO15090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7992-PA | 480 | CG7992-PA | 1..480 | 1..480 | 2472 | 100 | Plus |
