Clone Sequence Records
BO15108.3prime Sequence
530 bp (530 high quality bases) assembled on 2006-06-16
> BO15108.3prime
ATGGTCTAGAAAGCGTGCGACAAACGAAATTCCTCCGCCGTAATATTCCA
GGCGTGTCTGAGGCTGGACAAATGCCAACCAATCGGAGGCGTGGGTGGGG
AGGAGCCCCATGCTCTGGCACTTGTAGAGGGCCAAAGCCACGTTTGCTAG
GTTGCCCAGGAAGTAGACGATGCGCTGGCCAGTTCCCTGGGCCCCCTCCG
CCATTTTGGAAGTCACCTGGGTGGTGAAGATGGCCTTGATAGGCCGGATC
AGCATCATGCCGACCATCATGATGGGAAAAATGGAAATCGAGTTTCCTGA
CATGTACATGATGAATAGATTCATGGGAATGTTCTTAAGAGGTCCCAGGG
CAAGGTCCCACGACTTCTTGATGACCAGGCGCTGGTCGCGCACCACTTCA
CTCTGGTTCACCAAAGCAGATGGATTGTAGCCCAGCGGCGAAGGAATATC
AGCATTTTTGCTCCCGTTAAAGTCCAGCGCCCACTTTAACTTTTTTGGGT
TTTGCTTGGCGGACATGTCGACTGATAACT
BO15108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-PA | 501 | CG11137-RA | 1..498 | 516..19 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 957 | CG11137-RB | 91..589 | 517..19 | 2495 | 100 | Minus |
CG11137-RA | 644 | CG11137-RA | 91..589 | 517..19 | 2495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22867543..22867854 | 19..330 | 1560 | 100 | Plus |
3L | 28110227 | 3L | 22867907..22868038 | 331..462 | 660 | 100 | Plus |
3L | 28110227 | 3L | 22868097..22868153 | 461..517 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:13:16 has no hits.
BO15108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:29 Download gff for
BO15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-PA | 1..501 | 18..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:57 Download gff for
BO15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..595 | 10..524 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:29 Download gff for
BO15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..595 | 10..524 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:29 Download gff for
BO15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22867907..22868036 | 331..460 | 100 | <- | Plus |
3L | 22868097..22868156 | 461..524 | 93 | | Plus |
3L | 22867536..22867854 | 10..330 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:57 Download gff for
BO15108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22860636..22860954 | 10..330 | 98 | <- | Plus |
arm_3L | 22861007..22861136 | 331..460 | 100 | <- | Plus |
arm_3L | 22861197..22861256 | 461..524 | 93 | | Plus |
BO15108.5prime Sequence
530 bp (529 high quality bases) assembled on 2006-05-29
> BO15108.5prime
GAAGTTATCAGTCGACATGTCCGCCAAGCAAAACCCAAAAAAGTTAAAGT
GGGCGCTGGACTTTAACGGGAGCAAAAATGCTGATATTCCTTCGCCGCTG
GGCTACAATCCATCTGCTTTGGTGAACCAGAGTGAAGTGGTGCGCGACCA
GCGCCTGGTCATCAAGAAGTCGTGGGACCTTGCCCTGGGACCTCTTAAGA
ACATTCCCATGAATCTATTCATCATGTACATGTCAGGAAACTCGATTTCC
ATTTTTCCCATCATGATGGTCGGCATGATGCTGATCCGGCCTATCAAGGC
CATCTTCACCACCCAGGTGACTTCCAAAATGGCGGAGGGGGCCCAGGGAA
CTGGCCAGCGCATCGTCTACTTCCTGGGCAACCTAGCAAACGTGGCTTTG
GCCCTCTACAAGTGCCAGAGCATGGGGCTCCTCCCCACCCACGCCTCCGA
TTGGTTGGCATTTGTCCAGCCTCAGACACGCCTGGAATATTACGGCGGAG
GAATTTCGTTTGTCGCAAGCTTTCTAGACC
BO15108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-PA | 501 | CG11137-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 957 | CG11137-RB | 91..589 | 16..514 | 2495 | 100 | Plus |
CG11137-RA | 644 | CG11137-RA | 91..589 | 16..514 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22867543..22867854 | 514..203 | 1560 | 100 | Minus |
3L | 28110227 | 3L | 22867907..22868038 | 202..71 | 660 | 100 | Minus |
3L | 28110227 | 3L | 22868097..22868153 | 72..16 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:51:20 has no hits.
BO15108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:41:57 Download gff for
BO15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-PA | 1..501 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:12 Download gff for
BO15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-PA | 1..501 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:21 Download gff for
BO15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..595 | 9..523 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:26 Download gff for
BO15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 86..595 | 9..523 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:26 Download gff for
BO15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22867536..22867854 | 203..523 | 98 | <- | Minus |
3L | 22867907..22868036 | 73..202 | 100 | <- | Minus |
3L | 22868097..22868156 | 9..72 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:21 Download gff for
BO15108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22860636..22860954 | 203..523 | 98 | <- | Minus |
arm_3L | 22861007..22861136 | 73..202 | 100 | <- | Minus |
arm_3L | 22861197..22861256 | 9..72 | 93 | | Minus |
BO15108.complete Sequence
532 bp (532 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633343
> BO15108.complete
GAAGTTATCAGTCGACATGTCCGCCAAGCAAAACCCAAAAAAGTTAAAGT
GGGCGCTGGACTTTAACGGGAGCAAAAATGCTGATATTCCTTCGCCGCTG
GGCTACAATCCATCTGCTTTGGTGAACCAGAGTGAAGTGGTGCGCGACCA
GCGCCTGGTCATCAAGAAGTCGTGGGACCTTGCCCTGGGACCTCTTAAGA
ACATTCCCATGAATCTATTCATCATGTACATGTCAGGAAACTCGATTTCC
ATTTTTCCCATCATGATGGTCGGCATGATGCTGATCCGGCCTATCAAGGC
CATCTTCACCACCCAGGTGACTTCCAAAATGGCGGAGGGGGCCCAGGGAA
CTGGCCAGCGCATCGTCTACTTCCTGGGCAACCTAGCAAACGTGGCTTTG
GCCCTCTACAAGTGCCAGAGCATGGGGCTCCTCCCCACCCACGCCTCCGA
TTGGTTGGCATTTGTCCAGCCTCAGACACGCCTGGAATATTACGGCGGAG
GAATTTCGTTTGTCGCAAGCTTTCTAGACCAT
BO15108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 501 | CG11137-PB | 1..498 | 17..514 | 2490 | 100 | Plus |
CG11137-RA | 501 | CG11137-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-RB | 957 | CG11137-RB | 91..589 | 16..514 | 2495 | 100 | Plus |
CG11137-RA | 644 | CG11137-RA | 91..589 | 16..514 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22867543..22867854 | 514..203 | 1560 | 100 | Minus |
3L | 28110227 | 3L | 22867907..22868038 | 202..71 | 660 | 100 | Minus |
3L | 28110227 | 3L | 22868097..22868153 | 72..16 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:35:12 has no hits.
BO15108.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:12 Download gff for
BO15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 1..501 | 17..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:48 Download gff for
BO15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 77..586 | 9..523 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:28 Download gff for
BO15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 92..589 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:12 Download gff for
BO15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 77..586 | 9..523 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:57 Download gff for
BO15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11137-RA | 92..589 | 17..516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:57 Download gff for
BO15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22867907..22868036 | 73..202 | 100 | <- | Minus |
3L | 22868097..22868152 | 17..72 | 100 | | Minus |
3L | 22867541..22867854 | 203..516 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:28 Download gff for
BO15108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22860641..22860954 | 203..516 | 99 | <- | Minus |
arm_3L | 22861007..22861136 | 73..202 | 100 | <- | Minus |
arm_3L | 22861197..22861252 | 17..72 | 100 | | Minus |
BO15108.pep Sequence
Translation from 16 to 532
> BO15108.pep
MSAKQNPKKLKWALDFNGSKNADIPSPLGYNPSALVNQSEVVRDQRLVIK
KSWDLALGPLKNIPMNLFIMYMSGNSISIFPIMMVGMMLIRPIKAIFTTQ
VTSKMAEGAQGTGQRIVYFLGNLANVALALYKCQSMGLLPTHASDWLAFV
QPQTRLEYYGGGISFVASFLDH
BO15108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11137-PB | 166 | CG11137-PB | 1..166 | 1..166 | 856 | 100 | Plus |
CG11137-PA | 166 | CG11137-PA | 1..166 | 1..166 | 856 | 100 | Plus |