Clone Sequence Records
BO15115.3prime Sequence
855 bp (706 high quality bases) assembled on 2006-06-16
> BO15115.3prime
ATGGTCTAGAAAGCTTGCTTCAGATTCAAGCTTCAGGGCAGCAAGGCTCG
TCTCCGTTTCCGTGATCAGTTCATCCTCGTTTACCTTCAAGGGAGCACAT
CGTGTCCAGAACGCTTCGTCGTTGCTACCGGGCAAGGATTCCTGGGGGAA
CGTGTGCAGCGACAAGTCGTTGAATACATTGTGGTGCTCGTAGTCATCTT
CCAGCGGAGTTTCTGTACAATGTTCTACTATTCTTGTTATGTGGTCATCC
TGGTTTCTGGGCGTCATGGTCAGCATTTCGAAGCTATTCGAGATGAGAAA
AACGTTGGGCAGTGTCTCCCGCTTCCAATTGGACCACAGGATGTTATGCA
TCAGAGCGTAGGGGCAGTGTGGCAGATAATAGAGCGTGGGCACCGTCGCC
TCGTGCTTGCCCGCGCAGTCTTTGCTCATTATACAACCGTCGAACAGCCG
GATCAGTTCCTTCTCGCTGTCTCTGAAGACGGGATCGAAGTACAAGGCCT
CTCTGATCTTGTGATGCCGATGCAGTCCAATCACAAATGCAGCCTGATGC
AGGGCATGGTAGGTGCGGGAGAAAGGTCCCAGTCCCAGGCAAACAATTCG
CTCCAACGGTTTCCTAATGCCCTCCAGTTGCTGCTGCAGCGCTTCCATGG
CCACCAGAAAGTAGTCGCTTTGGCACATCTCGGTGCACAGGTTCTCAAGG
CGCGGCTGAAATTTCTCCACATTCACATCCGGACAGTCGATTAGGTAATC
GCTTTCGGATTTATGGCGATCCCGCCGCCTCAGGCACTTACGAGCCATCC
ATTTCTTGCGCGTTACCACCTGAAAATCCTCTCCAGAGTTCGACATGTCG
ACTGA
BO15115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-PA | 831 | CG7988-RA | 60..828 | 787..19 | 3845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 885 | CG7988-RA | 33..860 | 846..19 | 4140 | 100 | Minus |
CG7183-RA | 2367 | CG7183-RA | 1..142 | 705..846 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18220764..18221448 | 703..19 | 3425 | 100 | Minus |
3R | 32079331 | 3R | 18220558..18220701 | 846..703 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:42:51 has no hits.
BO15115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:05 Download gff for
BO15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 60..831 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:23 Download gff for
BO15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 60..831 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:41:45 Download gff for
BO15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..863 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:56 Download gff for
BO15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..863 | 15..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:56 Download gff for
BO15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18220556..18220700 | 704..849 | 99 | -> | Minus |
3R | 18220764..18221447 | 20..703 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:41:45 Download gff for
BO15115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14046278..14046422 | 704..849 | 99 | -> | Minus |
arm_3R | 14046486..14047169 | 20..703 | 100 | -> | Minus |
BO15115.5prime Sequence
749 bp (661 high quality bases) assembled on 2006-06-16
> BO15115.5prime
GAAGTTATCAGTCGACATGTCGAACTCTGGAGAGGATTTTCAGGTGGTAA
CGCGCAAGAAATGGATGGCTCGTAAGTGCCTGAGGCGGCGGGATCGCCAT
AAATCCGAAAGCGATTACCTAATCGACTGTCCGGATGTGAATGTGGAGAA
ATTTCAGCCGCGCCTTGAGAACCTGTGCACCGAGATGTGCCAAAGCGACT
ACTTTCTGGTGGCCATGGAAGCGCTGCAGCAGCAACTGGAGGGCATTAGG
AAACCGTTGGAGCGAATTGTTTGCCTGGGACTGGGACCTTTCTCCCGCAC
CTACCATGCCCTGCATCAGGCTGCATTTGTGATTGGACTGCATCGGCATC
ACAAGATCAGAGAGGCCTTGTACTTCGATCCCGTCTTCAGAGACAGCGAG
AAGGAACTGATCCGGCTGTTCGACGGTTGTATAATGAGCAAAGACTGCGC
GGGCAAGCACGAGGCGACGGTGCCCACGCTCTATTATCTGCCACACTGCC
CCTACGCTCTGATGCATAACATCCTGTGGTCCAATTGGAAGCGGGAGACA
CTGCCCAACGTTTTTCTCATCTCGAATAGCTTCGAAATGCTGACCATGAC
GCCCAGAAACCAGGATGACCACATAACAAGAATAGTAGAACATTGTACAG
AAACTCCGCTGGAAGATGACTACGAGCACCACAATGTATTCAACGACTTG
TCGCTGCACACGTTCCCCCAGGAATCCTTGCCCGGTAGCAACGACGAAG
BO15115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-PA | 831 | CG7988-RA | 1..733 | 17..749 | 3665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 885 | CG7988-RA | 33..765 | 17..749 | 3665 | 100 | Plus |
CG7183-RA | 2367 | CG7183-RA | 1..142 | 158..17 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18220764..18221353 | 160..749 | 2950 | 100 | Plus |
3R | 32079331 | 3R | 18220558..18220701 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:42:38 has no hits.
BO15115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:06 Download gff for
BO15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:24 Download gff for
BO15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-PA | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:44 Download gff for
BO15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..765 | 14..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:51 Download gff for
BO15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..765 | 14..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:51 Download gff for
BO15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18220556..18220700 | 14..159 | 99 | -> | Plus |
3R | 18220764..18221353 | 160..749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:44 Download gff for
BO15115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14046278..14046422 | 14..159 | 99 | -> | Plus |
arm_3R | 14046486..14047075 | 160..749 | 100 | | Plus |
BO15115.complete Sequence
862 bp (862 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633345
> BO15115.complete
GAAGTTATCAGTCGACATGTCGAACTCTGGAGAGGATTTTCAGGTGGTAA
CGCGCAAGAAATGGATGGCTCGTAAGTGCCTGAGGCGGCGGGATCGCCAT
AAATCCGAAAGCGATTACCTAATCGACTGTCCGGATGTGAATGTGGAGAA
ATTTCAGCCGCGCCTTGAGAACCTGTGCACCGAGATGTGCCAAAGCGACT
ACTTTCTGGTGGCCATGGAAGCGCTGCAGCAGCAACTGGAGGGCATTAGG
AAACCGTTGGAGCGAATTGTTTGCCTGGGACTGGGACCTTTCTCCCGCAC
CTACCATGCCCTGCATCAGGCTGCATTTGTGATTGGACTGCATCGGCATC
ACAAGATCAGAGAGGCCTTGTACTTCGATCCCGTCTTCAGAGACAGCGAG
AAGGAACTGATCCGGCTGTTCGACGGTTGTATAATGAGCAAAGACTGCGC
GGGCAAGCACGAGGCGACGGTGCCCACGCTCTATTATCTGCCACACTGCC
CCTACGCTCTGATGCATAACATCCTGTGGTCCAATTGGAAGCGGGAGACA
CTGCCCAACGTTTTTCTCATCTCGAATAGCTTCGAAATGCTGACCATGAC
GCCCAGAAACCAGGATGACCACATAACAAGAATAGTAGAACATTGTACAG
AAACTCCGCTGGAAGATGACTACGAGCACCACAATGTATTCAACGACTTG
TCGCTGCACACGTTCCCCCAGGAATCCTTGCCCGGTAGCAACGACGAAGC
GTTCTGGACACGATGTGCTCCCTTGAAGGTAAACGAGGATGAACTGATCA
CGGAAACGGAGACGAGCCTTGCTGCCCTGAAGCTTGAATCTGAAGCAAGC
TTTCTAGACCAT
BO15115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 831 | CG7988-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-RA | 885 | CG7988-RA | 33..860 | 17..844 | 4140 | 100 | Plus |
CG7183-RA | 2367 | CG7183-RA | 1..142 | 158..17 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18220764..18221448 | 160..844 | 3425 | 100 | Plus |
3R | 32079331 | 3R | 18220558..18220701 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:48:38 has no hits.
BO15115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:28 Download gff for
BO15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 1..831 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:54 Download gff for
BO15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..863 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:50 Download gff for
BO15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 33..860 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:28 Download gff for
BO15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 31..863 | 14..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:20 Download gff for
BO15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7988-RA | 33..860 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:20 Download gff for
BO15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18220558..18220700 | 17..159 | 100 | -> | Plus |
3R | 18220764..18221448 | 160..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:50 Download gff for
BO15115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14046280..14046422 | 17..159 | 100 | -> | Plus |
arm_3R | 14046486..14047170 | 160..846 | 99 | | Plus |
BO15115.pep Sequence
Translation from 16 to 862
> BO15115.pep
MSNSGEDFQVVTRKKWMARKCLRRRDRHKSESDYLIDCPDVNVEKFQPRL
ENLCTEMCQSDYFLVAMEALQQQLEGIRKPLERIVCLGLGPFSRTYHALH
QAAFVIGLHRHHKIREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEA
TVPTLYYLPHCPYALMHNILWSNWKRETLPNVFLISNSFEMLTMTPRNQD
DHITRIVEHCTETPLEDDYEHHNVFNDLSLHTFPQESLPGSNDEAFWTRC
APLKVNEDELITETETSLAALKLESEASFLDH
BO15115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7988-PA | 276 | CG7988-PA | 1..276 | 1..276 | 1494 | 100 | Plus |