Clone Sequence Records
BO15118.3prime Sequence
605 bp (605 high quality bases) assembled on 2006-06-16
> BO15118.3prime
ATGGTCTAGAAAGCTTGCTTTAATCGGCTGAAAGGCGGATAACACCGCTT
CCACAATTGTGGGTACCTCCGCCATGGCGCCGTTGCCAGTATCACCGCAC
ATCAGAGTCTTGGATATGCAGGGTATCTCCTTGTAGCCCCAACTGGTCAG
CTTGTCGATCTGCTCCCGAGTTATTGGATGGTCGTACATACGGGTATTCA
TCGCAGGTGCAAAGAGCAGCGGCTTCTCAAGGTCCCAGGCCCGCACCACA
CACATGACGATATTATCGCAAATCCCGGTGGCCATTTTGGACAGAGAGTT
TGCGCTGAGTGGGGCTATTACCAACAAATCCGCCCACTTGCCTAGATCTA
TGTGGAGTACAGGATCTCCTCGCTTGTTCCAGGTGATCCACTCGTCGCGA
TTGTGGTAAATGGGTACATTTTCGGGAATCTGCTCCAGTTCAAAGAAGTG
TTTGGCTGCTTCGGTAATAAGTACTTTCAGGTGGAACTTAAAGGGTAGGC
GCTCGTCGGAGAGCTCTCGGATTAACTGGGCTAACTTAATGGTGGCCACA
CTTCCGGTGGCCGCTATCATCACATTACGTTCGGGTTTCATGTCGACTGA
TAACT
BO15118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30290-PA | 576 | CG30290-RA | 1..573 | 591..19 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42496-RB | 1117 | CG42496-RB | 469..1042 | 592..19 | 2870 | 100 | Minus |
CG42496-RA | 1064 | CG42496-RA | 416..989 | 592..19 | 2870 | 100 | Minus |
Ppcdc-RB | 1117 | CG30290-RB | 469..1042 | 592..19 | 2870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21692432..21692689 | 276..19 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 21691995..21692170 | 592..417 | 880 | 100 | Minus |
2R | 25286936 | 2R | 21692234..21692375 | 417..276 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:49:11 has no hits.
BO15118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:30 Download gff for
BO15118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-PA | 1..576 | 18..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:00 Download gff for
BO15118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 466..1047 | 11..598 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:24 Download gff for
BO15118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 466..1047 | 11..598 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:24 Download gff for
BO15118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21691992..21692170 | 417..598 | 98 | -> | Minus |
2R | 21692235..21692374 | 277..416 | 100 | -> | Minus |
2R | 21692432..21692694 | 11..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:00 Download gff for
BO15118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17579497..17579675 | 417..598 | 98 | -> | Minus |
arm_2R | 17579740..17579879 | 277..416 | 100 | -> | Minus |
arm_2R | 17579937..17580199 | 11..276 | 98 | | Minus |
BO15118.5prime Sequence
605 bp (605 high quality bases) assembled on 2006-06-16
> BO15118.5prime
GAAGTTATCAGTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAAGCAAGCTTTCT
AGACC
BO15118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30290-PA | 576 | CG30290-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42496-RB | 1117 | CG42496-RB | 469..1042 | 16..589 | 2870 | 100 | Plus |
CG42496-RA | 1064 | CG42496-RA | 416..989 | 16..589 | 2870 | 100 | Plus |
Ppcdc-RB | 1117 | CG30290-RB | 469..1042 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21692432..21692689 | 332..589 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 21691995..21692170 | 16..191 | 880 | 100 | Plus |
2R | 25286936 | 2R | 21692234..21692375 | 191..332 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:13:59 has no hits.
BO15118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:09 Download gff for
BO15118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-PA | 1..576 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:28 Download gff for
BO15118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-PA | 1..576 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:41 Download gff for
BO15118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 466..1047 | 10..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:28 Download gff for
BO15118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 466..1047 | 10..597 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:28 Download gff for
BO15118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21691992..21692170 | 10..191 | 98 | -> | Plus |
2R | 21692235..21692374 | 192..331 | 100 | -> | Plus |
2R | 21692432..21692694 | 332..597 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:41 Download gff for
BO15118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17579497..17579675 | 10..191 | 98 | -> | Plus |
arm_2R | 17579740..17579879 | 192..331 | 100 | -> | Plus |
arm_2R | 17579937..17580199 | 332..597 | 98 | | Plus |
BO15118.complete Sequence
607 bp (607 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633347
> BO15118.complete
GAAGTTATCAGTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAAGCAAGCTTTCT
AGACCAT
BO15118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcdc-RB | 576 | CG30290-PB | 1..573 | 17..589 | 2865 | 100 | Plus |
Ppcdc-RA | 576 | CG30290-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42496-RB | 1117 | CG42496-RB | 469..1042 | 16..589 | 2870 | 100 | Plus |
CG42496-RA | 1064 | CG42496-RA | 416..989 | 16..589 | 2870 | 100 | Plus |
Ppcdc-RB | 1117 | CG30290-RB | 469..1042 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21692432..21692689 | 332..589 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 21691995..21692170 | 16..191 | 880 | 100 | Plus |
2R | 25286936 | 2R | 21692234..21692375 | 191..332 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:53:16 has no hits.
BO15118.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:38 Download gff for
BO15118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-RA | 1..576 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:54 Download gff for
BO15118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-RA | 403..984 | 10..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:34 Download gff for
BO15118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 470..1042 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:38 Download gff for
BO15118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-RA | 403..984 | 10..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:28 Download gff for
BO15118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 470..1042 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:28 Download gff for
BO15118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21692432..21692689 | 332..591 | 99 | | Plus |
2R | 21691996..21692170 | 17..191 | 100 | -> | Plus |
2R | 21692235..21692374 | 192..331 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:34 Download gff for
BO15118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17579501..17579675 | 17..191 | 100 | -> | Plus |
arm_2R | 17579740..17579879 | 192..331 | 100 | -> | Plus |
arm_2R | 17579937..17580194 | 332..591 | 99 | | Plus |
BO15118.pep Sequence
Translation from 16 to 607
> BO15118.pep
MKPERNVMIAATGSVATIKLAQLIRELSDERLPFKFHLKVLITEAAKHFF
ELEQIPENVPIYHNRDEWITWNKRGDPVLHIDLGKWADLLVIAPLSANSL
SKMATGICDNIVMCVVRAWDLEKPLLFAPAMNTRMYDHPITREQIDKLTS
WGYKEIPCISKTLMCGDTGNGAMAEVPTIVEAVLSAFQPIKASFLDH
BO15118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcdc-PB | 191 | CG30290-PB | 1..191 | 1..191 | 1005 | 100 | Plus |
Ppcdc-PA | 191 | CG30290-PA | 1..191 | 1..191 | 1005 | 100 | Plus |