Clone BO15118 Report

Search the DGRC for BO15118

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptPpcdc-RA
Protein status:BO15118.pep: validated full length
Sequenced Size:607

Clone Sequence Records

BO15118.3prime Sequence

605 bp (605 high quality bases) assembled on 2006-06-16

> BO15118.3prime
ATGGTCTAGAAAGCTTGCTTTAATCGGCTGAAAGGCGGATAACACCGCTT
CCACAATTGTGGGTACCTCCGCCATGGCGCCGTTGCCAGTATCACCGCAC
ATCAGAGTCTTGGATATGCAGGGTATCTCCTTGTAGCCCCAACTGGTCAG
CTTGTCGATCTGCTCCCGAGTTATTGGATGGTCGTACATACGGGTATTCA
TCGCAGGTGCAAAGAGCAGCGGCTTCTCAAGGTCCCAGGCCCGCACCACA
CACATGACGATATTATCGCAAATCCCGGTGGCCATTTTGGACAGAGAGTT
TGCGCTGAGTGGGGCTATTACCAACAAATCCGCCCACTTGCCTAGATCTA
TGTGGAGTACAGGATCTCCTCGCTTGTTCCAGGTGATCCACTCGTCGCGA
TTGTGGTAAATGGGTACATTTTCGGGAATCTGCTCCAGTTCAAAGAAGTG
TTTGGCTGCTTCGGTAATAAGTACTTTCAGGTGGAACTTAAAGGGTAGGC
GCTCGTCGGAGAGCTCTCGGATTAACTGGGCTAACTTAATGGTGGCCACA
CTTCCGGTGGCCGCTATCATCACATTACGTTCGGGTTTCATGTCGACTGA
TAACT

BO15118.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30290-PA 576 CG30290-RA 1..573 591..19 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG42496-RB 1117 CG42496-RB 469..1042 592..19 2870 100 Minus
CG42496-RA 1064 CG42496-RA 416..989 592..19 2870 100 Minus
Ppcdc-RB 1117 CG30290-RB 469..1042 592..19 2870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21692432..21692689 276..19 1290 100 Minus
2R 25286936 2R 21691995..21692170 592..417 880 100 Minus
2R 25286936 2R 21692234..21692375 417..276 710 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:49:11 has no hits.

BO15118.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:30 Download gff for BO15118.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30290-PA 1..576 18..591 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:43:00 Download gff for BO15118.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 466..1047 11..598 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:24 Download gff for BO15118.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 466..1047 11..598 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:24 Download gff for BO15118.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21691992..21692170 417..598 98 -> Minus
2R 21692235..21692374 277..416 100 -> Minus
2R 21692432..21692694 11..276 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:43:00 Download gff for BO15118.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17579497..17579675 417..598 98 -> Minus
arm_2R 17579740..17579879 277..416 100 -> Minus
arm_2R 17579937..17580199 11..276 98   Minus

BO15118.5prime Sequence

605 bp (605 high quality bases) assembled on 2006-06-16

> BO15118.5prime
GAAGTTATCAGTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAAGCAAGCTTTCT
AGACC

BO15118.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG30290-PA 576 CG30290-RA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42496-RB 1117 CG42496-RB 469..1042 16..589 2870 100 Plus
CG42496-RA 1064 CG42496-RA 416..989 16..589 2870 100 Plus
Ppcdc-RB 1117 CG30290-RB 469..1042 16..589 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21692432..21692689 332..589 1290 100 Plus
2R 25286936 2R 21691995..21692170 16..191 880 100 Plus
2R 25286936 2R 21692234..21692375 191..332 710 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:13:59 has no hits.

BO15118.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:09 Download gff for BO15118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30290-PA 1..576 17..590 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:28 Download gff for BO15118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30290-PA 1..576 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:41 Download gff for BO15118.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 466..1047 10..597 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:28 Download gff for BO15118.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 466..1047 10..597 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:28 Download gff for BO15118.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21691992..21692170 10..191 98 -> Plus
2R 21692235..21692374 192..331 100 -> Plus
2R 21692432..21692694 332..597 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:41 Download gff for BO15118.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17579497..17579675 10..191 98 -> Plus
arm_2R 17579740..17579879 192..331 100 -> Plus
arm_2R 17579937..17580199 332..597 98   Plus

BO15118.complete Sequence

607 bp (607 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633347

> BO15118.complete
GAAGTTATCAGTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAAGCAAGCTTTCT
AGACCAT

BO15118.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcdc-RB 576 CG30290-PB 1..573 17..589 2865 100 Plus
Ppcdc-RA 576 CG30290-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42496-RB 1117 CG42496-RB 469..1042 16..589 2870 100 Plus
CG42496-RA 1064 CG42496-RA 416..989 16..589 2870 100 Plus
Ppcdc-RB 1117 CG30290-RB 469..1042 16..589 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21692432..21692689 332..589 1290 100 Plus
2R 25286936 2R 21691995..21692170 16..191 880 100 Plus
2R 25286936 2R 21692234..21692375 191..332 710 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:53:16 has no hits.

BO15118.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:38 Download gff for BO15118.complete
Subject Subject Range Query Range Percent Splice Strand
CG30290-RA 1..576 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:54 Download gff for BO15118.complete
Subject Subject Range Query Range Percent Splice Strand
CG30290-RA 403..984 10..597 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:34 Download gff for BO15118.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 470..1042 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:38 Download gff for BO15118.complete
Subject Subject Range Query Range Percent Splice Strand
CG30290-RA 403..984 10..597 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:28 Download gff for BO15118.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 470..1042 17..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:28 Download gff for BO15118.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21692432..21692689 332..591 99   Plus
2R 21691996..21692170 17..191 100 -> Plus
2R 21692235..21692374 192..331 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:34 Download gff for BO15118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17579501..17579675 17..191 100 -> Plus
arm_2R 17579740..17579879 192..331 100 -> Plus
arm_2R 17579937..17580194 332..591 99   Plus

BO15118.pep Sequence

Translation from 16 to 607

> BO15118.pep
MKPERNVMIAATGSVATIKLAQLIRELSDERLPFKFHLKVLITEAAKHFF
ELEQIPENVPIYHNRDEWITWNKRGDPVLHIDLGKWADLLVIAPLSANSL
SKMATGICDNIVMCVVRAWDLEKPLLFAPAMNTRMYDHPITREQIDKLTS
WGYKEIPCISKTLMCGDTGNGAMAEVPTIVEAVLSAFQPIKASFLDH

BO15118.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcdc-PB 191 CG30290-PB 1..191 1..191 1005 100 Plus
Ppcdc-PA 191 CG30290-PA 1..191 1..191 1005 100 Plus