Clone Sequence Records
BO15121.3prime Sequence
928 bp (799 high quality bases) assembled on 2006-06-16
> BO15121.3prime
ATGGTCTAGAAAGCTTGCCTCGGCATCGTCGTCCTCATCGTCGTTGGAGC
TGATTCTGAAGTAGCGCAGCTCGTACGAGTCCTTTTCGTTGGCCACCACA
CGGATCCAGTCGCGCAGACTGTTCTTCTTCAGGTACTTCTTGGTCAAGTA
CTTGAGGTATGCCTTGGAAAAGTGAACGTCGGAGCTGACAATGAGCTTCA
GCTTGGAGCGCTCGAAGGTGACGTTGTTGCCCAGGTTGTTCACCTTGCCG
TTGACCTTAAGGCGGGCCTTGATGTACTTCTCGAAGTCGGCCACATCCAT
GATGCTATCCTCAGCAATGTTGGTGCAGTCGATAGTGAAGCGCAGCGAGA
CCTTCTTCTTCTTCTGTCCCTTGCCACGCAGCACGTTCTTCTTGACCACC
TTGCTGGGAGCTGGGGCAGCCTTTGCCTTCGGCTTAGGCGCGGGCTTGGC
GACAGCAGGAGCAGCTGCAGCCGGAGCGGGAGCAGCAGCAGCCGGGGCTG
CGGCCTTGGCGGGAGCAGCCTTCTTTGCTGGGGGAGCGGCAGCAGGCGTG
GAGGCAGCCTTCTTGGCCGGAGCAGCCTTGGCGGGAGCCGGAGCAGCAGC
AGCCTTGGCGTCCTTCTTGGGAGCAGCGGCAGCGGGAGCCTTCTTTCCGG
CATCCTTGGAAGCGGCGGCGGGCTTGGCAGCTGCGGGCTTGGCTGCCGCG
GGCTTGGCAGCAGCGGCGGCTGCCTTTACATCCTTGGCCGCCTCGGACGC
CTTCTTCACGTTCTTGGCCGCGGCGGCGGCGGGCTTGGCGGCCTCAGCCT
TCGGCTTCTCCACCTTGCCCTTGGCGGCGGCGGCTGCGGGAGCGGCCTTC
TTCTCCGCTGGCTTAGCGGCAGCGGTCTTGGTATCACCCTTGTTGGTCTT
GGCGGTAGGAGCCTTGTCGACTGATAAC
BO15121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7434-PA | 900 | RpL22-RA | 3..897 | 913..19 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 38..932 | 913..19 | 4475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 282..903 | 3110 | 100 | Plus |
| X | 23542271 | X | 762728..762991 | 19..282 | 1320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:32:48 has no hits.
BO15121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:31 Download gff for
BO15121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7434-PA | 1..900 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:40 Download gff for
BO15121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 38..937 | 14..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:57 Download gff for
BO15121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 38..937 | 14..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:57 Download gff for
BO15121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762723..762991 | 14..282 | 99 | <- | Plus |
| X | 764302..764922 | 283..903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:40 Download gff for
BO15121.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656756..657024 | 14..282 | 99 | <- | Plus |
| arm_X | 658335..658955 | 283..903 | 100 | | Plus |
BO15121.5prime Sequence
883 bp (802 high quality bases) assembled on 2006-06-16
> BO15121.5prime
GAAGTTATCAGTCGACATGGCTCCTACCGCCAAGACCAACAAGGGTGATA
CCAAGACCGCTGCCGCTAAGCCAGCGGAGAAGAAGGCCGCTCCCGCAGCC
GCCGCCGCCAAGGGCAAGGTGGAGAAGCCGAAGGCTGAGGCCGCCAAGCC
CGCCGCCGCCGCGGCCAAGAACGTGAAGAAGGCGTCCGAGGCGGCCAAGG
ATGTAAAGGCAGCCGCCGCTGCTGCCAAGCCCGCGGCAGCCAAGCCCGCA
GCTGCCAAGCCCGCCGCCGCTTCCAAGGATGCCGGAAAGAAGGCTCCCGC
TGCCGCTGCTCCCAAGAAGGACGCCAAGGCTGCTGCTGCTCCGGCTCCCG
CCAAGGCTGCTCCGGCCAAGAAGGCTGCCTCCACGCCTGCTGCCGCTCCC
CCAGCAAAGAAGGCTGCTCCCGCCAAGGCCGCAGCCCCGGCTGCTGCTGC
TCCCGCTCCGGCTGCAGCTGCTCCTGCTGTCGCCAAGCCCGCGCCTAAGC
CGAAGGCAAAGGCTGCCCCAGCTCCCAGCAAGGTGGTCAAGAAGAACGTG
CTGCGTGGCAAGGGACAGAAGAAGAAGAAGGTCTCGCTGCGCTTCACTAT
CGACTGCACCAACATTGCTGAGGATAGCATCATGGATGTGGCCGACTTCG
AGAAGTACATCAAGGCCCGCCTTAAGGTCAACGGCAAGGTGAACAACCTG
GGCAACAACGTCACCTTCGAGCGCTCCAAGCTGAAGCTCATTGTCAGCTC
CGACGTTCACTTTTCCAAGGCATACCTCAAGTACTTGACCAAGAAGTACC
TGAAGAAGAACAGTCTGCGCGACTGGATCCGTGTGGTGGCCAACGAAAAG
GACTCGTACGAGCTGCGCTACTTCAGAATCAGC
BO15121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7434-PA | 900 | RpL22-RA | 1..787 | 17..803 | 3860 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 36..902 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 650..29 | 3110 | 100 | Minus |
| X | 23542271 | X | 762758..762991 | 883..650 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:29:25 has no hits.
BO15121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:42:10 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:30 Download gff for
BO15121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7434-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:52 Download gff for
BO15121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..902 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:04 Download gff for
BO15121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..902 | 17..883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:04 Download gff for
BO15121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762758..762991 | 650..883 | 100 | <- | Minus |
| X | 764302..764922 | 29..649 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:52 Download gff for
BO15121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656791..657024 | 650..883 | 100 | <- | Minus |
| arm_X | 658335..658955 | 29..649 | 100 | <- | Minus |
BO15121.complete Sequence
931 bp (931 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633348
> BO15121.complete
GAAGTTATCAGTCGACATGGCTCCTACCGCCAAGACCAACAAGGGTGATA
CCAAGACCGCTGCCGCTAAGCCAGCGGAGAAGAAGGCCGCTCCCGCAGCC
GCCGCCGCCAAGGGCAAGGTGGAGAAGCCGAAGGCTGAGGCCGCCAAGCC
CGCCGCCGCCGCGGCCAAGAACGTGAAGAAGGCGTCCGAGGCGGCCAAGG
ATGTAAAGGCAGCCGCCGCTGCTGCCAAGCCCGCGGCAGCCAAGCCCGCA
GCTGCCAAGCCCGCCGCCGCTTCCAAGGATGCCGGAAAGAAGGCTCCCGC
TGCCGCTGCTCCCAAGAAGGACGCCAAGGCTGCTGCTGCTCCGGCTCCCG
CCAAGGCTGCTCCGGCCAAGAAGGCTGCCTCCACGCCTGCTGCCGCTCCC
CCAGCAAAGAAGGCTGCTCCCGCCAAGGCCGCAGCCCCGGCTGCTGCTGC
TCCCGCTCCGGCTGCAGCTGCTCCTGCTGTCGCCAAGCCCGCGCCTAAGC
CGAAGGCAAAGGCTGCCCCAGCTCCCAGCAAGGTGGTCAAGAAGAACGTG
CTGCGTGGCAAGGGACAGAAGAAGAAGAAGGTCTCGCTGCGCTTCACTAT
CGACTGCACCAACATTGCTGAGGATAGCATCATGGATGTGGCCGACTTCG
AGAAGTACATCAAGGCCCGCCTTAAGGTCAACGGCAAGGTGAACAACCTG
GGCAACAACGTCACCTTCGAGCGCTCCAAGCTGAAGCTCATTGTCAGCTC
CGACGTTCACTTTTCCAAGGCATACCTCAAGTACTTGACCAAGAAGTACC
TGAAGAAGAACAGTCTGCGCGACTGGATCCGTGTGGTGGCCAACGAAAAG
GACTCGTACGAGCTGCGCTACTTCAGAATCAGCTCCAACGACGATGAGGA
CGACGATGCCGAGGCAAGCTTTCTAGACCAT
BO15121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 900 | CG7434-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 36..932 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 650..29 | 3110 | 100 | Minus |
| X | 23542271 | X | 762728..762991 | 913..650 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:18:00 has no hits.
BO15121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:30 Download gff for
BO15121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:57 Download gff for
BO15121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 45..946 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:25 Download gff for
BO15121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..932 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:30 Download gff for
BO15121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 45..946 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:31 Download gff for
BO15121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..932 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:31 Download gff for
BO15121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762726..762991 | 650..915 | 99 | <- | Minus |
| X | 764302..764922 | 29..649 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:25 Download gff for
BO15121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656759..657024 | 650..915 | 99 | <- | Minus |
| arm_X | 658335..658955 | 29..649 | 100 | <- | Minus |
BO15121.pep Sequence
Translation from 16 to 931
> BO15121.pep
MAPTAKTNKGDTKTAAAKPAEKKAAPAAAAAKGKVEKPKAEAAKPAAAAA
KNVKKASEAAKDVKAAAAAAKPAAAKPAAAKPAAASKDAGKKAPAAAAPK
KDAKAAAAPAPAKAAPAKKAASTPAAAPPAKKAAPAKAAAPAAAAPAPAA
AAPAVAKPAPKPKAKAAPAPSKVVKKNVLRGKGQKKKKVSLRFTIDCTNI
AEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFS
KAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSNDDEDDDAEA
SFLDH
BO15121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-PA | 299 | CG7434-PA | 1..299 | 1..299 | 1475 | 100 | Plus |
| RpL22-like-PA | 312 | CG9871-PA | 5..303 | 4..301 | 481 | 42.4 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 224..440 | 2..176 | 213 | 36.1 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 224..440 | 2..176 | 213 | 36.1 | Plus |
| Nopp140-PA | 720 | CG7421-PA | 224..440 | 2..176 | 213 | 36.1 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 311..466 | 2..175 | 208 | 39.1 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 311..466 | 2..175 | 208 | 39.1 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 59..259 | 3..172 | 195 | 34.1 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 59..259 | 3..172 | 195 | 34.1 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 255..466 | 5..180 | 186 | 33.5 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 255..466 | 5..180 | 186 | 33.5 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 130..312 | 2..168 | 182 | 33.2 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 130..312 | 2..168 | 182 | 33.2 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 332..497 | 13..171 | 180 | 39.7 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 332..497 | 13..171 | 180 | 39.7 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 52..220 | 12..169 | 174 | 34.3 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 52..220 | 12..169 | 174 | 34.3 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 158..382 | 2..190 | 172 | 29.6 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 158..382 | 2..190 | 172 | 29.6 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 364..523 | 13..172 | 154 | 34.3 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 364..523 | 13..172 | 154 | 34.3 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 375..622 | 2..247 | 154 | 26.2 | Plus |
