Clone BO15123 Report

Search the DGRC for BO15123

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptbetaTub56D-RB
Protein status:BO15123.pep: validated full length
Sequenced Size:1375

Clone Sequence Records

BO15123.3prime Sequence

642 bp (636 high quality bases) assembled on 2006-05-29

> BO15123.3prime
ATGGTCTAGAAAGCTTGCGTTCTCGTCGACCTCAGCCTCCTGCTCCTCCT
CGAACTCGGCGTCCTCGTCGGCGGTGGCCTCCTGGTACTGCTGGTACTCG
GACACCAGATCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTC
CATGCCCTCGCCGGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATAG
CGGTGAACTGCTCGGAGATGCGCTTGAACAGCTCCTGGATGGCAGTGGAG
TTGCCGATGAAGGTGGCGGACATCTTCAGACCACGGGGCGGGATGTCGCA
CACGGCGGTCTTCACGTTGTTGGGGATCCATTCGACGAAGTAGGAGCTGT
TCTTGTTCTGGATGTTCAGCATCTGCTCGTCGACCTCCTTCATGGACATG
CGTCCACGGAAGATGGCGGCGACGGTAAGGTAGCGTCCGTGGCGTGGGTC
GCAGGCGGCCATCATGTTCTTGGCATCGAACATCTGCTGGGTCAGCTCGG
GCACGGTGAGGGCGCGGTACTGCTGGGATCCTCGGGAGGTCAGGGGAGCG
AAGCCGGGCATGAAGAAGTGAAGACGTGGGAAGGGCACCATGTTGACGGC
CAGCTTGCGGAGATCAGCGTTCAGTTGGCCGGGGAATCGGAG

BO15123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9277-PB 1344 betaTub56D-RB 718..1341 642..19 3120 100 Minus
CG9277-PA 1371 betaTub56D-RA 745..1368 642..19 3120 100 Minus
CG9277-PC 1128 betaTub56D-RC 502..1125 642..19 3120 100 Minus
CG9277-PD 1128 betaTub56D-RD 502..1125 642..19 3120 100 Minus
CG4869-PA 1569 betaTub97EF-RA 1249..1490 306..65 760 92.5 Minus
CG3401-PA 1365 betaTub60D-RA 1099..1313 279..65 700 93 Minus
CG3401-PA 1365 betaTub60D-RA 742..1011 636..367 650 89.6 Minus
CG9359-PA 1341 betaTub85D-RA 724..902 636..458 395 88.8 Minus
CG4869-PA 1569 betaTub97EF-RA 1024..1172 531..383 320 88.5 Minus
CG9359-PA 1341 betaTub85D-RA 934..1037 426..323 320 92.3 Minus
CG4869-PA 1569 betaTub97EF-RA 919..1017 636..538 270 90.9 Minus
CG9359-PA 1341 betaTub85D-RA 1174..1250 186..110 260 93.5 Minus
CG3401-PA 1365 betaTub60D-RA 1018..1091 360..287 245 93.2 Minus
CG9359-PA 1341 betaTub85D-RA 1057..1136 303..224 150 87.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RA 1701 CG9277-RA 934..1557 642..19 3120 100 Minus
betaTub56D-RB 1596 CG9277-RB 829..1452 642..19 3120 100 Minus
betaTub60D-RB 2515 CG3401-RB 940..1511 636..65 1990 89.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19447463..19448086 19..642 3120 100 Plus
2R 25286936 2R 24311524..24312095 636..65 1990 89.9 Minus
3R 32079331 3R 9408684..9409270 50..636 1720 86.2 Plus
3R 32079331 3R 27967268..27967592 81..405 1100 89.2 Plus
3R 32079331 3R 27968929..27969158 407..636 730 87.8 Plus
Blast to na_te.dros performed 2015-02-10 22:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 698..904 496..287 151 55.9 Minus

BO15123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:12 Download gff for BO15123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PC 502..1128 15..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:33 Download gff for BO15123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PD 502..1128 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:20 Download gff for BO15123.3prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 829..1458 11..642 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:16 Download gff for BO15123.3prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 829..1458 11..642 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:16 Download gff for BO15123.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19447457..19448086 11..642 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:20 Download gff for BO15123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15334962..15335591 11..642 99   Plus

BO15123.5prime Sequence

764 bp (689 high quality bases) assembled on 2006-06-16

> BO15123.5prime
GAAGTTATCAGTCGACATGAGGGAAATCGTTCACATCCAAGCTGGTCAGT
GCGGCAACCAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCAT
GGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGA
GCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCC
GCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCG
GGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTC
GGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGC
TGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGAC
TGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTC
CGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACA
GGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACC
GTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAA
CACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCT
TCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTT
GTCTCCCTGACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCA
ACTGAACGCTGATC

BO15123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9277-PB 1344 betaTub56D-RB 1..748 17..764 3740 100 Plus
CG9277-PA 1371 betaTub56D-RA 85..775 74..764 3455 100 Plus
CG9277-PC 1128 betaTub56D-RC 1..532 233..764 2660 100 Plus
CG9277-PD 1128 betaTub56D-RD 1..532 233..764 2660 100 Plus
CG3401-PA 1365 betaTub60D-RA 396..656 394..654 680 90.4 Plus
CG9359-PA 1341 betaTub85D-RA 421..561 437..577 330 89.3 Plus
CG9359-PA 1341 betaTub85D-RA 244..341 260..357 265 90.8 Plus
CG4869-PA 1569 betaTub97EF-RA 568..641 584..657 220 91.8 Plus
CG3401-PA 1365 betaTub60D-RA 31..92 47..108 210 93.5 Plus
CG3401-PA 1365 betaTub60D-RA 269..360 267..358 185 88 Plus
CG4869-PA 1569 betaTub97EF-RA 280..326 296..342 185 95.7 Plus
CG9359-PA 1341 betaTub85D-RA 628..683 644..699 155 91 Plus
CG3401-PA 1365 betaTub60D-RA 692..761 690..759 150 88.5 Plus
CG9359-PA 1341 betaTub85D-RA 565..617 581..633 140 90.5 Plus
CG9359-PA 1341 betaTub85D-RA 127..158 143..174 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RB 1596 CG9277-RB 112..859 17..764 3740 100 Plus
betaTub56D-RA 1701 CG9277-RA 274..964 74..764 3455 100 Plus
betaTub60D-RB 2515 CG3401-RB 202..964 17..764 1845 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19448056..19448748 764..72 3465 100 Minus
2R 25286936 2R 24311194..24311548 410..764 1115 87.6 Plus
3R 32079331 3R 9409246..9409600 764..410 980 85.1 Minus
3R 32079331 3R 9409679..9410046 390..23 805 81.2 Minus
3R 32079331 3R 27972919..27973151 540..308 565 82.8 Minus
2R 25286936 2R 24310905..24311136 177..408 545 82.3 Plus
3R 32079331 3R 27969656..27969829 710..537 465 84.5 Minus
3R 32079331 3R 27974107..27974344 309..72 365 76.9 Minus
2R 25286936 2R 19451433..19451489 73..17 285 100 Minus
2R 25286936 2R 24310720..24310832 72..184 220 79.6 Plus
3R 32079331 3R 27969439..27969535 650..554 215 81.4 Minus
Blast to na_te.dros performed on 2015-02-11 09:35:16 has no hits.

BO15123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:13 Download gff for BO15123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PB 1..748 17..764 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:34 Download gff for BO15123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9277-PB 1..748 17..764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:20 Download gff for BO15123.5prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 112..859 17..764 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:21 Download gff for BO15123.5prime
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 112..859 17..764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:21 Download gff for BO15123.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19448056..19448746 74..764 100 <- Minus
2R 19451433..19451489 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:20 Download gff for BO15123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15335561..15336251 74..764 100 <- Minus
arm_2R 15338938..15338994 17..73 100   Minus

BO15123.complete Sequence

1375 bp (1375 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633349

> BO15123.complete
GAAGTTATCAGTCGACATGAGGGAAATCGTTCACATCCAAGCTGGTCAGT
GCGGCAACCAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCAT
GGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGA
GCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCC
GCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCG
GGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTC
GGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGC
TGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGAC
TGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTC
CGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACA
GGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACC
GTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAA
CACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCT
TCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTT
GTCTCCCTGACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCA
ACTGAACGCTGATCTCCGCAAGCTGGCCGTCAACATGGTGCCCTTCCCAC
GTCTTCACTTCTTCATGCCCGGCTTCGCTCCCCTGACCTCCCGAGGATCC
CAGCAGTACCGCGCCCTCACCGTGCCCGAGCTGACCCAGCAGATGTTCGA
TGCCAAGAACATGATGGCCGCCTGCGACCCACGCCACGGACGCTACCTTA
CCGTCGCCGCCATCTTCCGTGGACGCATGTCCATGAAGGAGGTCGACGAG
CAGATGCTGAACATCCAGAACAAGAACAGCTCCTACTTCGTCGAATGGAT
CCCCAACAACGTGAAGACCGCCGTGTGCGACATCCCGCCCCGTGGTCTGA
AGATGTCCGCCACCTTCATCGGCAACTCCACTGCCATCCAGGAGCTGTTC
AAGCGCATCTCCGAGCAGTTCACCGCTATGTTCAGGCGCAAGGCTTTCTT
GCATTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCG
AGAGCAACATGAACGATCTGGTGTCCGAGTACCAGCAGTACCAGGAGGCC
ACCGCCGACGAGGACGCCGAGTTCGAGGAGGAGCAGGAGGCTGAGGTCGA
CGAGAACGCAAGCTTTCTAGACCAT

BO15123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RB 1344 CG9277-PB 1..1341 17..1357 6705 100 Plus
betaTub56D-RA 1371 CG9277-PA 85..1368 74..1357 6420 100 Plus
betaTub60D-RB 1362 CG3401-PB 1..1310 17..1311 3710 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-RB 1596 CG9277-RB 112..1452 17..1357 6705 100 Plus
betaTub56D-RA 1701 CG9277-RA 274..1557 74..1357 6420 100 Plus
betaTub60D-RB 2515 CG3401-RB 202..1511 17..1311 3710 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19447463..19448748 1357..72 6430 100 Minus
2R 25286936 2R 24311194..24312095 410..1311 3010 88.9 Plus
3R 32079331 3R 9408684..9409600 1326..410 2605 85.6 Minus
3R 32079331 3R 27967268..27967592 1295..971 1100 89.2 Minus
3R 32079331 3R 9409679..9410046 390..23 805 81.2 Minus
3R 32079331 3R 27968929..27969185 969..713 805 87.5 Minus
3R 32079331 3R 27972919..27973151 540..308 565 82.8 Minus
2R 25286936 2R 24310905..24311136 177..408 545 82.3 Plus
3R 32079331 3R 27969656..27969829 710..537 465 84.5 Minus
3R 32079331 3R 27974107..27974344 309..72 365 76.9 Minus
2R 25286936 2R 19451433..19451489 73..17 285 100 Minus
2R 25286936 2R 24310720..24310832 72..184 220 79.6 Plus
3R 32079331 3R 27969439..27969535 650..554 215 81.4 Minus
3L 28110227 3L 6531600..6531723 705..828 200 77.4 Plus
Blast to na_te.dros performed on 2014-11-27 21:01:04 has no hits.

BO15123.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:16 Download gff for BO15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 1..1344 17..1361 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:38 Download gff for BO15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 129..1475 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:49 Download gff for BO15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 112..1452 17..1359 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:17 Download gff for BO15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 129..1475 17..1365 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:00 Download gff for BO15123.complete
Subject Subject Range Query Range Percent Splice Strand
betaTub56D-RB 112..1452 17..1359 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:00 Download gff for BO15123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19447461..19448746 74..1359 99 <- Minus
2R 19451433..19451489 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:49 Download gff for BO15123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15334966..15336251 74..1359 99 <- Minus
arm_2R 15338938..15338994 17..73 100   Minus

BO15123.pep Sequence

Translation from 16 to 1375

> BO15123.pep
MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDSDLQLERINVY
YNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETY
CIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVK
TAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQEAEVDENASF
LDH

BO15123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
betaTub56D-PB 447 CG9277-PB 1..447 1..447 2357 100 Plus
betaTub56D-PA 456 CG9277-PA 29..456 20..447 2257 100 Plus
betaTub85D-PA 446 CG9359-PA 1..446 1..446 2248 94.6 Plus
betaTub60D-PB 453 CG3401-PB 1..446 1..441 2164 90.6 Plus
betaTub60D-PA 454 CG3401-PA 1..447 1..441 2163 90.4 Plus