Clone Sequence Records
BO15123.3prime Sequence
642 bp (636 high quality bases) assembled on 2006-05-29
> BO15123.3prime
ATGGTCTAGAAAGCTTGCGTTCTCGTCGACCTCAGCCTCCTGCTCCTCCT
CGAACTCGGCGTCCTCGTCGGCGGTGGCCTCCTGGTACTGCTGGTACTCG
GACACCAGATCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTC
CATGCCCTCGCCGGTGTACCAATGCAAGAAAGCCTTGCGCCTGAACATAG
CGGTGAACTGCTCGGAGATGCGCTTGAACAGCTCCTGGATGGCAGTGGAG
TTGCCGATGAAGGTGGCGGACATCTTCAGACCACGGGGCGGGATGTCGCA
CACGGCGGTCTTCACGTTGTTGGGGATCCATTCGACGAAGTAGGAGCTGT
TCTTGTTCTGGATGTTCAGCATCTGCTCGTCGACCTCCTTCATGGACATG
CGTCCACGGAAGATGGCGGCGACGGTAAGGTAGCGTCCGTGGCGTGGGTC
GCAGGCGGCCATCATGTTCTTGGCATCGAACATCTGCTGGGTCAGCTCGG
GCACGGTGAGGGCGCGGTACTGCTGGGATCCTCGGGAGGTCAGGGGAGCG
AAGCCGGGCATGAAGAAGTGAAGACGTGGGAAGGGCACCATGTTGACGGC
CAGCTTGCGGAGATCAGCGTTCAGTTGGCCGGGGAATCGGAG
BO15123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9277-PB | 1344 | betaTub56D-RB | 718..1341 | 642..19 | 3120 | 100 | Minus |
CG9277-PA | 1371 | betaTub56D-RA | 745..1368 | 642..19 | 3120 | 100 | Minus |
CG9277-PC | 1128 | betaTub56D-RC | 502..1125 | 642..19 | 3120 | 100 | Minus |
CG9277-PD | 1128 | betaTub56D-RD | 502..1125 | 642..19 | 3120 | 100 | Minus |
CG4869-PA | 1569 | betaTub97EF-RA | 1249..1490 | 306..65 | 760 | 92.5 | Minus |
CG3401-PA | 1365 | betaTub60D-RA | 1099..1313 | 279..65 | 700 | 93 | Minus |
CG3401-PA | 1365 | betaTub60D-RA | 742..1011 | 636..367 | 650 | 89.6 | Minus |
CG9359-PA | 1341 | betaTub85D-RA | 724..902 | 636..458 | 395 | 88.8 | Minus |
CG4869-PA | 1569 | betaTub97EF-RA | 1024..1172 | 531..383 | 320 | 88.5 | Minus |
CG9359-PA | 1341 | betaTub85D-RA | 934..1037 | 426..323 | 320 | 92.3 | Minus |
CG4869-PA | 1569 | betaTub97EF-RA | 919..1017 | 636..538 | 270 | 90.9 | Minus |
CG9359-PA | 1341 | betaTub85D-RA | 1174..1250 | 186..110 | 260 | 93.5 | Minus |
CG3401-PA | 1365 | betaTub60D-RA | 1018..1091 | 360..287 | 245 | 93.2 | Minus |
CG9359-PA | 1341 | betaTub85D-RA | 1057..1136 | 303..224 | 150 | 87.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTub56D-RA | 1701 | CG9277-RA | 934..1557 | 642..19 | 3120 | 100 | Minus |
betaTub56D-RB | 1596 | CG9277-RB | 829..1452 | 642..19 | 3120 | 100 | Minus |
betaTub60D-RB | 2515 | CG3401-RB | 940..1511 | 636..65 | 1990 | 89.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19447463..19448086 | 19..642 | 3120 | 100 | Plus |
2R | 25286936 | 2R | 24311524..24312095 | 636..65 | 1990 | 89.9 | Minus |
3R | 32079331 | 3R | 9408684..9409270 | 50..636 | 1720 | 86.2 | Plus |
3R | 32079331 | 3R | 27967268..27967592 | 81..405 | 1100 | 89.2 | Plus |
3R | 32079331 | 3R | 27968929..27969158 | 407..636 | 730 | 87.8 | Plus |
Blast to na_te.dros performed 2015-02-10 22:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 698..904 | 496..287 | 151 | 55.9 | Minus |
BO15123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:12 Download gff for
BO15123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9277-PC | 502..1128 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:33 Download gff for
BO15123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9277-PD | 502..1128 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:14:20 Download gff for
BO15123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 829..1458 | 11..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:16 Download gff for
BO15123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 829..1458 | 11..642 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:16 Download gff for
BO15123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19447457..19448086 | 11..642 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:14:20 Download gff for
BO15123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15334962..15335591 | 11..642 | 99 | | Plus |
BO15123.5prime Sequence
764 bp (689 high quality bases) assembled on 2006-06-16
> BO15123.5prime
GAAGTTATCAGTCGACATGAGGGAAATCGTTCACATCCAAGCTGGTCAGT
GCGGCAACCAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCAT
GGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGA
GCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCC
GCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCG
GGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTC
GGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGC
TGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGAC
TGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTC
CGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACA
GGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACC
GTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAA
CACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCT
TCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTT
GTCTCCCTGACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCA
ACTGAACGCTGATC
BO15123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9277-PB | 1344 | betaTub56D-RB | 1..748 | 17..764 | 3740 | 100 | Plus |
CG9277-PA | 1371 | betaTub56D-RA | 85..775 | 74..764 | 3455 | 100 | Plus |
CG9277-PC | 1128 | betaTub56D-RC | 1..532 | 233..764 | 2660 | 100 | Plus |
CG9277-PD | 1128 | betaTub56D-RD | 1..532 | 233..764 | 2660 | 100 | Plus |
CG3401-PA | 1365 | betaTub60D-RA | 396..656 | 394..654 | 680 | 90.4 | Plus |
CG9359-PA | 1341 | betaTub85D-RA | 421..561 | 437..577 | 330 | 89.3 | Plus |
CG9359-PA | 1341 | betaTub85D-RA | 244..341 | 260..357 | 265 | 90.8 | Plus |
CG4869-PA | 1569 | betaTub97EF-RA | 568..641 | 584..657 | 220 | 91.8 | Plus |
CG3401-PA | 1365 | betaTub60D-RA | 31..92 | 47..108 | 210 | 93.5 | Plus |
CG3401-PA | 1365 | betaTub60D-RA | 269..360 | 267..358 | 185 | 88 | Plus |
CG4869-PA | 1569 | betaTub97EF-RA | 280..326 | 296..342 | 185 | 95.7 | Plus |
CG9359-PA | 1341 | betaTub85D-RA | 628..683 | 644..699 | 155 | 91 | Plus |
CG3401-PA | 1365 | betaTub60D-RA | 692..761 | 690..759 | 150 | 88.5 | Plus |
CG9359-PA | 1341 | betaTub85D-RA | 565..617 | 581..633 | 140 | 90.5 | Plus |
CG9359-PA | 1341 | betaTub85D-RA | 127..158 | 143..174 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTub56D-RB | 1596 | CG9277-RB | 112..859 | 17..764 | 3740 | 100 | Plus |
betaTub56D-RA | 1701 | CG9277-RA | 274..964 | 74..764 | 3455 | 100 | Plus |
betaTub60D-RB | 2515 | CG3401-RB | 202..964 | 17..764 | 1845 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19448056..19448748 | 764..72 | 3465 | 100 | Minus |
2R | 25286936 | 2R | 24311194..24311548 | 410..764 | 1115 | 87.6 | Plus |
3R | 32079331 | 3R | 9409246..9409600 | 764..410 | 980 | 85.1 | Minus |
3R | 32079331 | 3R | 9409679..9410046 | 390..23 | 805 | 81.2 | Minus |
3R | 32079331 | 3R | 27972919..27973151 | 540..308 | 565 | 82.8 | Minus |
2R | 25286936 | 2R | 24310905..24311136 | 177..408 | 545 | 82.3 | Plus |
3R | 32079331 | 3R | 27969656..27969829 | 710..537 | 465 | 84.5 | Minus |
3R | 32079331 | 3R | 27974107..27974344 | 309..72 | 365 | 76.9 | Minus |
2R | 25286936 | 2R | 19451433..19451489 | 73..17 | 285 | 100 | Minus |
2R | 25286936 | 2R | 24310720..24310832 | 72..184 | 220 | 79.6 | Plus |
3R | 32079331 | 3R | 27969439..27969535 | 650..554 | 215 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:35:16 has no hits.
BO15123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:13 Download gff for
BO15123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9277-PB | 1..748 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:34 Download gff for
BO15123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9277-PB | 1..748 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:01:20 Download gff for
BO15123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 112..859 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:21 Download gff for
BO15123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 112..859 | 17..764 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:21 Download gff for
BO15123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19448056..19448746 | 74..764 | 100 | <- | Minus |
2R | 19451433..19451489 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:01:20 Download gff for
BO15123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15335561..15336251 | 74..764 | 100 | <- | Minus |
arm_2R | 15338938..15338994 | 17..73 | 100 | | Minus |
BO15123.complete Sequence
1375 bp (1375 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633349
> BO15123.complete
GAAGTTATCAGTCGACATGAGGGAAATCGTTCACATCCAAGCTGGTCAGT
GCGGCAACCAAATCGGCGCCAAGTTCTGGGAGATCATCTCCGATGAGCAT
GGCATCGATGCCACCGGCGCCTACCACGGTGACAGCGACCTGCAGCTGGA
GCGCATCAATGTGTACTACAATGAGGCGTCCGGTGGCAAGTACGTGCCCC
GCGCTGTCCTTGTCGATCTGGAGCCCGGCACCATGGACTCTGTGCGATCG
GGACCTTTCGGCCAGATCTTCAGGCCCGACAACTTTGTGTTCGGCCAGTC
GGGTGCCGGCAACAACTGGGCCAAGGGTCATTACACAGAGGGTGCTGAGC
TGGTGGACTCAGTGCTCGATGTTGTCCGCAAGGAGGCCGAATCCTGCGAC
TGCCTGCAAGGCTTCCAACTCACACACTCCCTTGGCGGCGGCACTGGCTC
CGGTATGGGAACCCTGCTGATTTCCAAGATCCGCGAGGAGTACCCCGACA
GGATCATGAACACATACTCGGTTGTGCCGTCGCCCAAGGTGTCGGACACC
GTTGTGGAGCCCTACAACGCCACCCTGTCGGTGCACCAGCTGGTCGAGAA
CACGGACGAGACCTACTGCATCGACAACGAGGCTCTCTACGATATCTGCT
TCCGCACCCTCAAGCTGACGACACCCACATACGGTGACCTGAACCATCTT
GTCTCCCTGACCATGTCCGGCGTAACCACCTGCCTCCGATTCCCCGGCCA
ACTGAACGCTGATCTCCGCAAGCTGGCCGTCAACATGGTGCCCTTCCCAC
GTCTTCACTTCTTCATGCCCGGCTTCGCTCCCCTGACCTCCCGAGGATCC
CAGCAGTACCGCGCCCTCACCGTGCCCGAGCTGACCCAGCAGATGTTCGA
TGCCAAGAACATGATGGCCGCCTGCGACCCACGCCACGGACGCTACCTTA
CCGTCGCCGCCATCTTCCGTGGACGCATGTCCATGAAGGAGGTCGACGAG
CAGATGCTGAACATCCAGAACAAGAACAGCTCCTACTTCGTCGAATGGAT
CCCCAACAACGTGAAGACCGCCGTGTGCGACATCCCGCCCCGTGGTCTGA
AGATGTCCGCCACCTTCATCGGCAACTCCACTGCCATCCAGGAGCTGTTC
AAGCGCATCTCCGAGCAGTTCACCGCTATGTTCAGGCGCAAGGCTTTCTT
GCATTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCG
AGAGCAACATGAACGATCTGGTGTCCGAGTACCAGCAGTACCAGGAGGCC
ACCGCCGACGAGGACGCCGAGTTCGAGGAGGAGCAGGAGGCTGAGGTCGA
CGAGAACGCAAGCTTTCTAGACCAT
BO15123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTub56D-RB | 1344 | CG9277-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
betaTub56D-RA | 1371 | CG9277-PA | 85..1368 | 74..1357 | 6420 | 100 | Plus |
betaTub60D-RB | 1362 | CG3401-PB | 1..1310 | 17..1311 | 3710 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTub56D-RB | 1596 | CG9277-RB | 112..1452 | 17..1357 | 6705 | 100 | Plus |
betaTub56D-RA | 1701 | CG9277-RA | 274..1557 | 74..1357 | 6420 | 100 | Plus |
betaTub60D-RB | 2515 | CG3401-RB | 202..1511 | 17..1311 | 3710 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19447463..19448748 | 1357..72 | 6430 | 100 | Minus |
2R | 25286936 | 2R | 24311194..24312095 | 410..1311 | 3010 | 88.9 | Plus |
3R | 32079331 | 3R | 9408684..9409600 | 1326..410 | 2605 | 85.6 | Minus |
3R | 32079331 | 3R | 27967268..27967592 | 1295..971 | 1100 | 89.2 | Minus |
3R | 32079331 | 3R | 9409679..9410046 | 390..23 | 805 | 81.2 | Minus |
3R | 32079331 | 3R | 27968929..27969185 | 969..713 | 805 | 87.5 | Minus |
3R | 32079331 | 3R | 27972919..27973151 | 540..308 | 565 | 82.8 | Minus |
2R | 25286936 | 2R | 24310905..24311136 | 177..408 | 545 | 82.3 | Plus |
3R | 32079331 | 3R | 27969656..27969829 | 710..537 | 465 | 84.5 | Minus |
3R | 32079331 | 3R | 27974107..27974344 | 309..72 | 365 | 76.9 | Minus |
2R | 25286936 | 2R | 19451433..19451489 | 73..17 | 285 | 100 | Minus |
2R | 25286936 | 2R | 24310720..24310832 | 72..184 | 220 | 79.6 | Plus |
3R | 32079331 | 3R | 27969439..27969535 | 650..554 | 215 | 81.4 | Minus |
3L | 28110227 | 3L | 6531600..6531723 | 705..828 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:04 has no hits.
BO15123.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:16 Download gff for
BO15123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 1..1344 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:38 Download gff for
BO15123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 129..1475 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:49 Download gff for
BO15123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 112..1452 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:17 Download gff for
BO15123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 129..1475 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:00 Download gff for
BO15123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTub56D-RB | 112..1452 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:00 Download gff for
BO15123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19447461..19448746 | 74..1359 | 99 | <- | Minus |
2R | 19451433..19451489 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:49 Download gff for
BO15123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15334966..15336251 | 74..1359 | 99 | <- | Minus |
arm_2R | 15338938..15338994 | 17..73 | 100 | | Minus |
BO15123.pep Sequence
Translation from 16 to 1375
> BO15123.pep
MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDSDLQLERINVY
YNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETY
CIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVK
TAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQEAEVDENASF
LDH
BO15123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTub56D-PB | 447 | CG9277-PB | 1..447 | 1..447 | 2357 | 100 | Plus |
betaTub56D-PA | 456 | CG9277-PA | 29..456 | 20..447 | 2257 | 100 | Plus |
betaTub85D-PA | 446 | CG9359-PA | 1..446 | 1..446 | 2248 | 94.6 | Plus |
betaTub60D-PB | 453 | CG3401-PB | 1..446 | 1..441 | 2164 | 90.6 | Plus |
betaTub60D-PA | 454 | CG3401-PA | 1..447 | 1..441 | 2163 | 90.4 | Plus |