Clone Sequence Records
BO15126.3prime Sequence
757 bp (755 high quality bases) assembled on 2006-05-29
> BO15126.3prime
ATGGTCTAGAAAGCTTGCATCCTTCTTGATCCGTGCCTGAAGAAAGCAGT
ATAGGATTCCTGCCTGAGCCATAACGTCGACTGTGCTGGCTGCCAGTGGA
TCCTTCTGCTTCACCTGCGTTTGGCCCGGCCTTAGCAAGGTTGGTCCAAA
CACCATGGCCAGATTGTGCAACGACATCTTGTTATCTGTCTCCTTTTCGT
GGACTCTTATTAAATGATCTAATATCGAAGTAATGGAGGCTTTGTTGGCC
TGTGGCAACTCCTCAAAAACTTTTAGAAGCTCGTTGATTCGTGTGGATTC
GTTGTTGTTGCTAAAGGCGCTGAATGTGTCGAAAAATCGTGGATAAAGTT
GATCCGTGAAAAGGGCCTCGGGGAGCTCCCTTAAAAAAGTTTTCAGAATG
CCAGTGACCGAATGGATGTCCACCTCGCGTAGCAACTGCTCCGCCTCATA
GGCATCAGACTCAAAGGCCTTCTTCAGCTTCGCCAAATCAGAAGCGGAAC
CGCTGACGCGGTAGCAGCCAACCTCCAGCATCCCACGCCGCTCTACCTCC
CGAATGCAGGCGCCTATGATGAACGGAATGTCGCGTTTTTCACGTTTTAA
TACTTGACTCATTTTGGCACCGAAGAGGGCTCCTGGCTTTGTGCTGCCGC
GGAAGAGCTCGCCTGGTATAAAACGGAAGCTACAGCCGAGCTCTAAGGTC
TCAGTAAGTTTAATTGACTTCGGCTGCGTTGTTTCTGTCAGCCAACTAAA
ACTCAAC
BO15126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:32:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP1A-RB | 5012 | CG00000-RB | 3775..4513 | 757..19 | 3680 | 99.9 | Minus |
RhoGAP1A-RA | 5082 | CG00000-RA | 3775..4513 | 757..19 | 3680 | 99.9 | Minus |
RhoGAP1A-RE | 5089 | CG40494-RE | 3782..4520 | 757..19 | 3680 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 139274..139524 | 456..206 | 1255 | 100 | Minus |
X | 23542271 | X | 139583..139771 | 207..19 | 945 | 100 | Minus |
X | 23542271 | X | 138769..138930 | 757..596 | 795 | 99.4 | Minus |
X | 23542271 | X | 139067..139206 | 595..456 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:38:07 has no hits.
BO15126.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:50:38 Download gff for
BO15126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RE | 3782..4529 | 9..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:37 Download gff for
BO15126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RE | 3782..4529 | 9..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:37 Download gff for
BO15126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 139585..139780 | 9..205 | 97 | | Minus |
X | 138769..138930 | 596..757 | 99 | -> | Minus |
X | 139067..139206 | 456..595 | 100 | -> | Minus |
X | 139275..139524 | 206..455 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:50:38 Download gff for
BO15126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 35156..35317 | 596..757 | 99 | -> | Minus |
arm_X | 35454..35593 | 456..595 | 100 | -> | Minus |
arm_X | 35662..35911 | 206..455 | 100 | -> | Minus |
arm_X | 35972..36167 | 9..205 | 97 | | Minus |
BO15126.5prime Sequence
854 bp (716 high quality bases) assembled on 2006-06-16
> BO15126.5prime
GAAGTTATCAGTCGACATGGTGCGTAATTCTTTTATTGTAGAACTTGTCG
ATGGACATCGTAAGCTGCGGCATCTCTTTCTTTTTAATGATGTCATCGCA
TGTGCCAAATACAAAGCATTAGGCCGCGATCGTATCGACTATGAGCTCAA
ATGGTTCATTCCGCTAAAAGACGTATCCATTTACGAGGAAGCAGATCCGG
CGGTCGAGCTTAAGGAATCTAGTCCAGCAAACATTTCGCAAGTAAAACGC
AATTTGCGATCCGTTCGAGATCAATTGGCCATGGAGGTGGCTAACAGTGG
AAGTGGAGCCTTCCGTTCCGGTGATAAGTATCGCCGCAAGCTGGCGGATC
TGGAATCACAGCTGGTGCTGGCAACGCCCAATTTAGTGTTGCGCCTGGGG
AACAAGGCAAATAATAAAACCATAACCTTCTTTCTTAGCTCGGATTTTGA
GAGGACGCAGTGGATCGACTCAATCTTATCCCTTAAGCAAAAATGCAACC
TGCCTGGAGCAAATACTATTAATTCCCTGGAGGTTACCGCCTTCATTGTA
GCCATGCAGAAGGGCATGAAAACCGAAATGGGTTCATATCTTATGCGTAA
CACTAACGACGAGAGCCTGTTGGTTGGGGACCTGTACATGGGAGTTCATG
GATTGGAAGGACTGGAGCAAGCGAACGACCTGTACATCTGCGTCGAGGTG
GACTCCTATGGCCACTATTTTCGCAAGGCCACCACCAAGAAGATATGTCG
CAGTCAAACGCCGCTCTGGAACGAAAGCTTTATGCTGGAACTGGAGGGCA
GCCAGAATGTACGCATTCTTCTTTATGAGGCTAAGGAACGACCGCTTTCT
AAAG
BO15126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:32:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP1A-RC | 4254 | CG40494-RC | 3122..3960 | 16..854 | 4150 | 99.6 | Plus |
RhoGAP1A-RB | 5012 | CG00000-RB | 2920..3758 | 16..854 | 4150 | 99.6 | Plus |
RhoGAP1A-RA | 5082 | CG00000-RA | 2920..3758 | 16..854 | 4150 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 137789..138260 | 16..487 | 2360 | 100 | Plus |
X | 23542271 | X | 138320..138688 | 486..854 | 1800 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:15:03 has no hits.
BO15126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:12 Download gff for
BO15126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RA | 2907..3758 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:49 Download gff for
BO15126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RA | 2907..3758 | 1..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:49 Download gff for
BO15126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 137776..138260 | 1..487 | 98 | -> | Plus |
X | 138322..138688 | 488..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:12 Download gff for
BO15126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 34709..35075 | 488..854 | 99 | | Plus |
arm_X | 34163..34647 | 1..487 | 98 | -> | Plus |
BO15126.complete Sequence
1627 bp (1627 high quality bases) assembled on 2006-08-17
> BO15126.complete
GAAGTTATCAGTCGACATGGTGCGTAATTCTTTTATTGTAGAACTTGTCG
ATGGACATCGTAAGCTGCGGCATCTCTTTCTTTTTAATGATGTCATCGCA
TGTGCCAAATACAAAGCATTAGGCCGCGATCGTATCGACTATGAGCTCAA
ATGGTTCATTCCGCTAAAAGACGTATCCATTTACGAGGAAGCAGATCCGG
CGGTCGAGCTTAAGGAATCTAGTCCAGCAAACATTTCGCAAGTAAAACGC
AATTTGCGATCCGTTCGAGATCAATTGGCCATGGAGGTGGCTAACAGTGG
AAGTGGAGCCTTCCGTTCCGGTGATAAGTATCGCCGCAAGCTGGCGGATC
TGGAATCACAGCTGGTGCTGGCAACGCCCAATTTAGTGTTGCGCCTGGGG
AACAAGGCAAATAATAAAACCATAACCTTCTTTCTTAGCTCGGATTTTGA
GAGGACGCAGTGGATCGACTCAATCTTATCCCTTAAGCAAAAATGCAACC
TGCCTGGAGCAAATACTATTAATTCCCTGGAGGTTACCGCCTTCATTGTA
GCCATGCAGAAGGGCATGAAAACCGAAATGGGTTCATATCTTATGCGTAA
CACTAACGACGAGAGCCTGTTGGTTGGGGACCTGTACATGGGAGTTCATG
GATTGGAAGGACTGGAGCAAGCGAACGACCTGTACATCTGCGTCGAGGTG
GACTCCTATGGCCACTATTTTCGCAAGGCCACCACCAAGAAGATATGTCG
CAGTCAAACGCCGCTCTGGAACGAAAGCTTTATGCTGGAACTGGAGGGCA
GCCAGAATGTACGCATTCTTCTTTATGAGGCTAAGGAGCGACCGCTTCTT
AAAGCCAAGCACATACTTAAGTTGAGTTTAAGTTGGCTGACAGAAACAAC
GCAGCCGAAGTCAATTAAACTTACTGAGACCTTAGAGCTCGGCTGTAGCT
TCCGTTTTATACCAGGCGAGCTCTTCCGCGGCAGCACAAAGCCAGGAGCC
CTCTTCGGTGCCAAAATGAGTCAAGTATTAAAACGTGAAAAACGCGACAT
TCCGTTCATCATAGGCGCCTGCATTCGGGAGGTAGAGCGGCGTGGGATGC
TGGAGGTTGGCTGCTACCGCGTCAGCGGTTCCGCTTCTGATTTGGCGAAG
CTGAAGAAGGCCTTTGAGTCTGATGCCTATGAGGCGGAGCAGTTGCTACG
CGAGGTGGACATCCATTCGGTCACTGGCATTCTGAAAACTTTTTTAAGGG
AGCTCCCCGAGGCCCTTTTCACGGATCAACTTTATCCACGATTTTTCGAC
ACATTCAGCGCCTTTAGCAACAACAACGAATCCACACGAATCAACGAGCT
TCTAAAAGTTTTTGAGGAGTTGCCACAGGCCAACAAAGCCTCCATTACTT
CGATATTAGATCATTTAATAAGAGTCCACGAAAAGGAGACAGATAACAAG
ATGTCGTTGCACAATCTGGCCATGGTGTTTGGACCAACCTTGCTAAGGCC
GGGCCAAACGCAGGTGAAGCAGAAGGATCCACTGGCAGCCAGCACAGTCG
ACGTTATGGCTCAGGCAGGAATCCTATACTGCTTTCTTCAGGCACGGATC
AAGAAGGATGCAAGCTTTCTAGACCAT
BO15126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP1A-RB | 4212 | CG40494-PB | 2616..4209 | 16..1609 | 7970 | 100 | Plus |
RhoGAP1A-RA | 4212 | CG40494-PA | 2616..4209 | 16..1609 | 7970 | 100 | Plus |
RhoGAP1A-RE | 4215 | CG40494-PE | 2619..4212 | 16..1609 | 7970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP1A-RB | 5012 | CG00000-RB | 2920..4513 | 16..1609 | 7970 | 100 | Plus |
RhoGAP1A-RA | 5082 | CG00000-RA | 2920..4513 | 16..1609 | 7970 | 100 | Plus |
RhoGAP1A-RE | 5089 | CG40494-RE | 2927..4520 | 16..1609 | 7970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 137789..138260 | 16..487 | 2360 | 100 | Plus |
X | 23542271 | X | 138320..138705 | 486..871 | 1930 | 100 | Plus |
X | 23542271 | X | 139274..139524 | 1172..1422 | 1255 | 100 | Plus |
X | 23542271 | X | 139583..139771 | 1421..1609 | 945 | 100 | Plus |
X | 23542271 | X | 138768..138930 | 870..1032 | 815 | 100 | Plus |
X | 23542271 | X | 139067..139206 | 1033..1172 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:22:15 has no hits.
BO15126.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:41 Download gff for
BO15126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RB | 2603..4212 | 1..1610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:08 Download gff for
BO15126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RB | 2869..4484 | 1..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:47 Download gff for
BO15126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RE | 2928..4520 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:41 Download gff for
BO15126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RB | 2869..4484 | 1..1619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:58 Download gff for
BO15126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP1A-RE | 2928..4520 | 17..1611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:58 Download gff for
BO15126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 139067..139206 | 1033..1172 | 100 | -> | Plus |
X | 137790..138260 | 17..487 | 100 | -> | Plus |
X | 138322..138705 | 488..871 | 100 | -> | Plus |
X | 138770..138930 | 872..1032 | 100 | -> | Plus |
X | 139275..139524 | 1173..1422 | 100 | -> | Plus |
X | 139585..139771 | 1423..1611 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:47 Download gff for
BO15126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 34177..34647 | 17..487 | 100 | -> | Plus |
arm_X | 34709..35092 | 488..871 | 100 | -> | Plus |
arm_X | 35157..35317 | 872..1032 | 100 | -> | Plus |
arm_X | 35454..35593 | 1033..1172 | 100 | -> | Plus |
arm_X | 35662..35911 | 1173..1422 | 100 | -> | Plus |
arm_X | 35972..36158 | 1423..1611 | 98 | | Plus |
BO15126.pep Sequence
Translation from 16 to 1627
> BO15126.pep
MVRNSFIVELVDGHRKLRHLFLFNDVIACAKYKALGRDRIDYELKWFIPL
KDVSIYEEADPAVELKESSPANISQVKRNLRSVRDQLAMEVANSGSGAFR
SGDKYRRKLADLESQLVLATPNLVLRLGNKANNKTITFFLSSDFERTQWI
DSILSLKQKCNLPGANTINSLEVTAFIVAMQKGMKTEMGSYLMRNTNDES
LLVGDLYMGVHGLEGLEQANDLYICVEVDSYGHYFRKATTKKICRSQTPL
WNESFMLELEGSQNVRILLYEAKERPLLKAKHILKLSLSWLTETTQPKSI
KLTETLELGCSFRFIPGELFRGSTKPGALFGAKMSQVLKREKRDIPFIIG
ACIREVERRGMLEVGCYRVSGSASDLAKLKKAFESDAYEAEQLLREVDIH
SVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNNESTRINELLKVFE
ELPQANKASITSILDHLIRVHEKETDNKMSLHNLAMVFGPTLLRPGQTQV
KQKDPLAASTVDVMAQAGILYCFLQARIKKDASFLDH
BO15126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP1A-PB | 1403 | CG00000-PB | 873..1403 | 1..531 | 2701 | 100 | Plus |
RhoGAP1A-PA | 1403 | CG00000-PA | 873..1403 | 1..531 | 2701 | 100 | Plus |
RhoGAP1A-PE | 1404 | CG40494-PE | 874..1404 | 1..531 | 2701 | 100 | Plus |
RhoGAP1A-PD | 1402 | CG40494-PD | 872..1402 | 1..531 | 2701 | 100 | Plus |
RhoGAP1A-PC | 903 | CG40494-PC | 565..903 | 1..339 | 1731 | 100 | Plus |