Clone BO15126 Report

Search the DGRC for BO15126

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:26
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO15126.pep:
Sequenced Size:1627

Clone Sequence Records

BO15126.3prime Sequence

757 bp (755 high quality bases) assembled on 2006-05-29

> BO15126.3prime
ATGGTCTAGAAAGCTTGCATCCTTCTTGATCCGTGCCTGAAGAAAGCAGT
ATAGGATTCCTGCCTGAGCCATAACGTCGACTGTGCTGGCTGCCAGTGGA
TCCTTCTGCTTCACCTGCGTTTGGCCCGGCCTTAGCAAGGTTGGTCCAAA
CACCATGGCCAGATTGTGCAACGACATCTTGTTATCTGTCTCCTTTTCGT
GGACTCTTATTAAATGATCTAATATCGAAGTAATGGAGGCTTTGTTGGCC
TGTGGCAACTCCTCAAAAACTTTTAGAAGCTCGTTGATTCGTGTGGATTC
GTTGTTGTTGCTAAAGGCGCTGAATGTGTCGAAAAATCGTGGATAAAGTT
GATCCGTGAAAAGGGCCTCGGGGAGCTCCCTTAAAAAAGTTTTCAGAATG
CCAGTGACCGAATGGATGTCCACCTCGCGTAGCAACTGCTCCGCCTCATA
GGCATCAGACTCAAAGGCCTTCTTCAGCTTCGCCAAATCAGAAGCGGAAC
CGCTGACGCGGTAGCAGCCAACCTCCAGCATCCCACGCCGCTCTACCTCC
CGAATGCAGGCGCCTATGATGAACGGAATGTCGCGTTTTTCACGTTTTAA
TACTTGACTCATTTTGGCACCGAAGAGGGCTCCTGGCTTTGTGCTGCCGC
GGAAGAGCTCGCCTGGTATAAAACGGAAGCTACAGCCGAGCTCTAAGGTC
TCAGTAAGTTTAATTGACTTCGGCTGCGTTGTTTCTGTCAGCCAACTAAA
ACTCAAC

BO15126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:32:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP1A-RB 5012 CG00000-RB 3775..4513 757..19 3680 99.9 Minus
RhoGAP1A-RA 5082 CG00000-RA 3775..4513 757..19 3680 99.9 Minus
RhoGAP1A-RE 5089 CG40494-RE 3782..4520 757..19 3680 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 139274..139524 456..206 1255 100 Minus
X 23542271 X 139583..139771 207..19 945 100 Minus
X 23542271 X 138769..138930 757..596 795 99.4 Minus
X 23542271 X 139067..139206 595..456 700 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:38:07 has no hits.

BO15126.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:50:38 Download gff for BO15126.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RE 3782..4529 9..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:37 Download gff for BO15126.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RE 3782..4529 9..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:37 Download gff for BO15126.3prime
Subject Subject Range Query Range Percent Splice Strand
X 139585..139780 9..205 97   Minus
X 138769..138930 596..757 99 -> Minus
X 139067..139206 456..595 100 -> Minus
X 139275..139524 206..455 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:50:38 Download gff for BO15126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 35156..35317 596..757 99 -> Minus
arm_X 35454..35593 456..595 100 -> Minus
arm_X 35662..35911 206..455 100 -> Minus
arm_X 35972..36167 9..205 97   Minus

BO15126.5prime Sequence

854 bp (716 high quality bases) assembled on 2006-06-16

> BO15126.5prime
GAAGTTATCAGTCGACATGGTGCGTAATTCTTTTATTGTAGAACTTGTCG
ATGGACATCGTAAGCTGCGGCATCTCTTTCTTTTTAATGATGTCATCGCA
TGTGCCAAATACAAAGCATTAGGCCGCGATCGTATCGACTATGAGCTCAA
ATGGTTCATTCCGCTAAAAGACGTATCCATTTACGAGGAAGCAGATCCGG
CGGTCGAGCTTAAGGAATCTAGTCCAGCAAACATTTCGCAAGTAAAACGC
AATTTGCGATCCGTTCGAGATCAATTGGCCATGGAGGTGGCTAACAGTGG
AAGTGGAGCCTTCCGTTCCGGTGATAAGTATCGCCGCAAGCTGGCGGATC
TGGAATCACAGCTGGTGCTGGCAACGCCCAATTTAGTGTTGCGCCTGGGG
AACAAGGCAAATAATAAAACCATAACCTTCTTTCTTAGCTCGGATTTTGA
GAGGACGCAGTGGATCGACTCAATCTTATCCCTTAAGCAAAAATGCAACC
TGCCTGGAGCAAATACTATTAATTCCCTGGAGGTTACCGCCTTCATTGTA
GCCATGCAGAAGGGCATGAAAACCGAAATGGGTTCATATCTTATGCGTAA
CACTAACGACGAGAGCCTGTTGGTTGGGGACCTGTACATGGGAGTTCATG
GATTGGAAGGACTGGAGCAAGCGAACGACCTGTACATCTGCGTCGAGGTG
GACTCCTATGGCCACTATTTTCGCAAGGCCACCACCAAGAAGATATGTCG
CAGTCAAACGCCGCTCTGGAACGAAAGCTTTATGCTGGAACTGGAGGGCA
GCCAGAATGTACGCATTCTTCTTTATGAGGCTAAGGAACGACCGCTTTCT
AAAG

BO15126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:32:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP1A-RC 4254 CG40494-RC 3122..3960 16..854 4150 99.6 Plus
RhoGAP1A-RB 5012 CG00000-RB 2920..3758 16..854 4150 99.6 Plus
RhoGAP1A-RA 5082 CG00000-RA 2920..3758 16..854 4150 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 137789..138260 16..487 2360 100 Plus
X 23542271 X 138320..138688 486..854 1800 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 05:15:03 has no hits.

BO15126.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:12 Download gff for BO15126.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RA 2907..3758 1..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:49 Download gff for BO15126.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RA 2907..3758 1..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:49 Download gff for BO15126.5prime
Subject Subject Range Query Range Percent Splice Strand
X 137776..138260 1..487 98 -> Plus
X 138322..138688 488..854 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:12 Download gff for BO15126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 34709..35075 488..854 99   Plus
arm_X 34163..34647 1..487 98 -> Plus

BO15126.complete Sequence

1627 bp (1627 high quality bases) assembled on 2006-08-17

> BO15126.complete
GAAGTTATCAGTCGACATGGTGCGTAATTCTTTTATTGTAGAACTTGTCG
ATGGACATCGTAAGCTGCGGCATCTCTTTCTTTTTAATGATGTCATCGCA
TGTGCCAAATACAAAGCATTAGGCCGCGATCGTATCGACTATGAGCTCAA
ATGGTTCATTCCGCTAAAAGACGTATCCATTTACGAGGAAGCAGATCCGG
CGGTCGAGCTTAAGGAATCTAGTCCAGCAAACATTTCGCAAGTAAAACGC
AATTTGCGATCCGTTCGAGATCAATTGGCCATGGAGGTGGCTAACAGTGG
AAGTGGAGCCTTCCGTTCCGGTGATAAGTATCGCCGCAAGCTGGCGGATC
TGGAATCACAGCTGGTGCTGGCAACGCCCAATTTAGTGTTGCGCCTGGGG
AACAAGGCAAATAATAAAACCATAACCTTCTTTCTTAGCTCGGATTTTGA
GAGGACGCAGTGGATCGACTCAATCTTATCCCTTAAGCAAAAATGCAACC
TGCCTGGAGCAAATACTATTAATTCCCTGGAGGTTACCGCCTTCATTGTA
GCCATGCAGAAGGGCATGAAAACCGAAATGGGTTCATATCTTATGCGTAA
CACTAACGACGAGAGCCTGTTGGTTGGGGACCTGTACATGGGAGTTCATG
GATTGGAAGGACTGGAGCAAGCGAACGACCTGTACATCTGCGTCGAGGTG
GACTCCTATGGCCACTATTTTCGCAAGGCCACCACCAAGAAGATATGTCG
CAGTCAAACGCCGCTCTGGAACGAAAGCTTTATGCTGGAACTGGAGGGCA
GCCAGAATGTACGCATTCTTCTTTATGAGGCTAAGGAGCGACCGCTTCTT
AAAGCCAAGCACATACTTAAGTTGAGTTTAAGTTGGCTGACAGAAACAAC
GCAGCCGAAGTCAATTAAACTTACTGAGACCTTAGAGCTCGGCTGTAGCT
TCCGTTTTATACCAGGCGAGCTCTTCCGCGGCAGCACAAAGCCAGGAGCC
CTCTTCGGTGCCAAAATGAGTCAAGTATTAAAACGTGAAAAACGCGACAT
TCCGTTCATCATAGGCGCCTGCATTCGGGAGGTAGAGCGGCGTGGGATGC
TGGAGGTTGGCTGCTACCGCGTCAGCGGTTCCGCTTCTGATTTGGCGAAG
CTGAAGAAGGCCTTTGAGTCTGATGCCTATGAGGCGGAGCAGTTGCTACG
CGAGGTGGACATCCATTCGGTCACTGGCATTCTGAAAACTTTTTTAAGGG
AGCTCCCCGAGGCCCTTTTCACGGATCAACTTTATCCACGATTTTTCGAC
ACATTCAGCGCCTTTAGCAACAACAACGAATCCACACGAATCAACGAGCT
TCTAAAAGTTTTTGAGGAGTTGCCACAGGCCAACAAAGCCTCCATTACTT
CGATATTAGATCATTTAATAAGAGTCCACGAAAAGGAGACAGATAACAAG
ATGTCGTTGCACAATCTGGCCATGGTGTTTGGACCAACCTTGCTAAGGCC
GGGCCAAACGCAGGTGAAGCAGAAGGATCCACTGGCAGCCAGCACAGTCG
ACGTTATGGCTCAGGCAGGAATCCTATACTGCTTTCTTCAGGCACGGATC
AAGAAGGATGCAAGCTTTCTAGACCAT

BO15126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP1A-RB 4212 CG40494-PB 2616..4209 16..1609 7970 100 Plus
RhoGAP1A-RA 4212 CG40494-PA 2616..4209 16..1609 7970 100 Plus
RhoGAP1A-RE 4215 CG40494-PE 2619..4212 16..1609 7970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP1A-RB 5012 CG00000-RB 2920..4513 16..1609 7970 100 Plus
RhoGAP1A-RA 5082 CG00000-RA 2920..4513 16..1609 7970 100 Plus
RhoGAP1A-RE 5089 CG40494-RE 2927..4520 16..1609 7970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 137789..138260 16..487 2360 100 Plus
X 23542271 X 138320..138705 486..871 1930 100 Plus
X 23542271 X 139274..139524 1172..1422 1255 100 Plus
X 23542271 X 139583..139771 1421..1609 945 100 Plus
X 23542271 X 138768..138930 870..1032 815 100 Plus
X 23542271 X 139067..139206 1033..1172 700 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:22:15 has no hits.

BO15126.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:41 Download gff for BO15126.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RB 2603..4212 1..1610 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:08 Download gff for BO15126.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RB 2869..4484 1..1619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:47 Download gff for BO15126.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RE 2928..4520 17..1611 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:41 Download gff for BO15126.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RB 2869..4484 1..1619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:58 Download gff for BO15126.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP1A-RE 2928..4520 17..1611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:58 Download gff for BO15126.complete
Subject Subject Range Query Range Percent Splice Strand
X 139067..139206 1033..1172 100 -> Plus
X 137790..138260 17..487 100 -> Plus
X 138322..138705 488..871 100 -> Plus
X 138770..138930 872..1032 100 -> Plus
X 139275..139524 1173..1422 100 -> Plus
X 139585..139771 1423..1611 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:47 Download gff for BO15126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 34177..34647 17..487 100 -> Plus
arm_X 34709..35092 488..871 100 -> Plus
arm_X 35157..35317 872..1032 100 -> Plus
arm_X 35454..35593 1033..1172 100 -> Plus
arm_X 35662..35911 1173..1422 100 -> Plus
arm_X 35972..36158 1423..1611 98   Plus

BO15126.pep Sequence

Translation from 16 to 1627

> BO15126.pep
MVRNSFIVELVDGHRKLRHLFLFNDVIACAKYKALGRDRIDYELKWFIPL
KDVSIYEEADPAVELKESSPANISQVKRNLRSVRDQLAMEVANSGSGAFR
SGDKYRRKLADLESQLVLATPNLVLRLGNKANNKTITFFLSSDFERTQWI
DSILSLKQKCNLPGANTINSLEVTAFIVAMQKGMKTEMGSYLMRNTNDES
LLVGDLYMGVHGLEGLEQANDLYICVEVDSYGHYFRKATTKKICRSQTPL
WNESFMLELEGSQNVRILLYEAKERPLLKAKHILKLSLSWLTETTQPKSI
KLTETLELGCSFRFIPGELFRGSTKPGALFGAKMSQVLKREKRDIPFIIG
ACIREVERRGMLEVGCYRVSGSASDLAKLKKAFESDAYEAEQLLREVDIH
SVTGILKTFLRELPEALFTDQLYPRFFDTFSAFSNNNESTRINELLKVFE
ELPQANKASITSILDHLIRVHEKETDNKMSLHNLAMVFGPTLLRPGQTQV
KQKDPLAASTVDVMAQAGILYCFLQARIKKDASFLDH

BO15126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP1A-PB 1403 CG00000-PB 873..1403 1..531 2701 100 Plus
RhoGAP1A-PA 1403 CG00000-PA 873..1403 1..531 2701 100 Plus
RhoGAP1A-PE 1404 CG40494-PE 874..1404 1..531 2701 100 Plus
RhoGAP1A-PD 1402 CG40494-PD 872..1402 1..531 2701 100 Plus
RhoGAP1A-PC 903 CG40494-PC 565..903 1..339 1731 100 Plus