Clone BO15128 Report

Search the DGRC for BO15128

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:151
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptAps-RA
Protein status:BO15128.pep: validated full length
Sequenced Size:565

Clone Sequence Records

BO15128.3prime Sequence

563 bp (563 high quality bases) assembled on 2006-06-16

> BO15128.3prime
ATGGTCTAGAAAGCTTGCTGCCGTAGTGGGAGATGCGGCTGGGGTGGCGG
CATTGGTCAACTTGGGCGGATGCGTGGCGTTCACCACGCGATTCGTGTTG
TCCAGCGTCTTCGAGTGCTGCAGCTGCATCAGATAGTGTTGCTGCGTCGG
CTTATGCAGCGCCAGCTGCGAGAGTGCATCATCGATGGTGAACCACTGGC
GCTTGCGACCGATGCTCCGCGAATCCTCCCACTCGTCCAGTTCCTGAGTC
ACGTTCATCACGAACACCTCGGTGCGATGCATGTGGTCATTGTTCTCGAA
TACACCGAGACAACGACCCAGATCGCCAACCACGCCGGCTTCTTCGAGCA
CTTCGCGCACGGCTGTCACCGATGACTCCTCTTCTGGTTCAACGCCGCCT
CCTGGAACGATCCACAACTCCGGGCGACGAGATGAGGTTACCAAGAGTAC
CTCCGCCTCATTCTCCGATTTCACGCAAATACAAGCAGCCCGGCGCCTAA
ATCCATCCTTGTCGTAGATGCGAGTCGAGTTGGGCTTCTCCTTGACCATG
TCGACTGATAACT

BO15128.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6391-PA 534 Aps-RA 206..531 344..19 1630 100 Minus
CG6391-PB 534 Aps-RB 206..531 344..19 1630 100 Minus
CG6391-PC 534 Aps-RC 206..531 344..19 1630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 2744 CG6391-RC 854..1386 551..19 2665 100 Minus
Aps-RB 2364 CG6391-RB 1145..1677 551..19 2665 100 Minus
Aps-RA 2565 CG6391-RA 677..1207 549..19 2655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10896134..10896411 19..296 1390 100 Plus
3L 28110227 3L 10896469..10896626 295..452 790 100 Plus
3L 28110227 3L 10896777..10896877 449..549 505 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:21:26 has no hits.

BO15128.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:18 Download gff for BO15128.3prime
Subject Subject Range Query Range Percent Splice Strand
Aps-PA 190..534 15..361 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:38 Download gff for BO15128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6391-PC 190..534 15..361 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:33 Download gff for BO15128.3prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1682 14..551 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:16 Download gff for BO15128.3prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1682 14..551 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:16 Download gff for BO15128.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10896469..10896624 295..450 100 <- Plus
3L 10896779..10896882 451..554 98   Plus
3L 10896129..10896409 14..294 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:33 Download gff for BO15128.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10889229..10889509 14..294 99 <- Plus
arm_3L 10889569..10889724 295..450 100 <- Plus
arm_3L 10889879..10889982 451..554 98   Plus

BO15128.5prime Sequence

563 bp (563 high quality bases) assembled on 2006-06-16

> BO15128.5prime
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCAGCA
AGCTTTCTAGACC

BO15128.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6391-PA 534 Aps-RA 1..531 17..547 2655 100 Plus
CG6391-PB 534 Aps-RB 1..531 17..547 2655 100 Plus
CG6391-PC 534 Aps-RC 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 2744 CG6391-RC 854..1386 15..547 2665 100 Plus
Aps-RB 2364 CG6391-RB 1145..1677 15..547 2665 100 Plus
Aps-RA 2565 CG6391-RA 677..1207 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10896134..10896411 547..270 1390 100 Minus
3L 28110227 3L 10896469..10896626 271..114 790 100 Minus
3L 28110227 3L 10896777..10896877 117..17 505 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:13:31 has no hits.

BO15128.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:19 Download gff for BO15128.5prime
Subject Subject Range Query Range Percent Splice Strand
Aps-PA 1..534 17..551 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:40 Download gff for BO15128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6391-PC 1..534 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:45 Download gff for BO15128.5prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1682 15..552 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:42 Download gff for BO15128.5prime
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1145..1682 15..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:42 Download gff for BO15128.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10896129..10896409 272..552 99 <- Minus
3L 10896469..10896624 116..271 100 <- Minus
3L 10896779..10896882 12..115 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:45 Download gff for BO15128.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10889229..10889509 272..552 99 <- Minus
arm_3L 10889569..10889724 116..271 100 <- Minus
arm_3L 10889879..10889982 12..115 98   Minus

BO15128.complete Sequence

565 bp (565 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ638737

> BO15128.complete
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCAGCA
AGCTTTCTAGACCAT

BO15128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 534 CG6391-PC 1..531 17..547 2655 100 Plus
Aps-RB 534 CG6391-PB 1..531 17..547 2655 100 Plus
Aps-RA 534 CG6391-PA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-RC 2744 CG6391-RC 854..1386 15..547 2665 100 Plus
Aps-RB 2364 CG6391-RB 1145..1677 15..547 2665 100 Plus
Aps-RA 2565 CG6391-RA 677..1207 17..547 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10896134..10896411 547..270 1390 100 Minus
3L 28110227 3L 10896469..10896626 271..114 790 100 Minus
3L 28110227 3L 10896777..10896877 117..17 505 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:21:12 has no hits.

BO15128.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:19 Download gff for BO15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RC 1..534 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:41 Download gff for BO15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1169..1706 15..552 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:00 Download gff for BO15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1147..1677 17..549 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:19 Download gff for BO15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1169..1706 15..552 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:40 Download gff for BO15128.complete
Subject Subject Range Query Range Percent Splice Strand
Aps-RB 1147..1677 17..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:40 Download gff for BO15128.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10896132..10896409 272..549 99 <- Minus
3L 10896469..10896624 116..271 100 <- Minus
3L 10896779..10896877 17..115 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:00 Download gff for BO15128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10889879..10889977 17..115 100   Minus
arm_3L 10889232..10889509 272..549 99 <- Minus
arm_3L 10889569..10889724 116..271 100 <- Minus

BO15128.pep Sequence

Translation from 16 to 565

> BO15128.pep
MVKEKPNSTRIYDKDGFRRRAACICVKSENEAEVLLVTSSRRPELWIVPG
GGVEPEEESSVTAVREVLEEAGVVGDLGRCLGVFENNDHMHRTEVFVMNV
TQELDEWEDSRSIGRKRQWFTIDDALSQLALHKPTQQHYLMQLQHSKTLD
NTNRVVNATHPPKLTNAATPAASPTTAASFLDH

BO15128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Aps-PC 177 CG6391-PC 1..177 1..177 926 100 Plus
Aps-PB 177 CG6391-PB 1..177 1..177 926 100 Plus
Aps-PA 177 CG6391-PA 1..177 1..177 926 100 Plus