Clone Sequence Records
BO15128.3prime Sequence
563 bp (563 high quality bases) assembled on 2006-06-16
> BO15128.3prime
ATGGTCTAGAAAGCTTGCTGCCGTAGTGGGAGATGCGGCTGGGGTGGCGG
CATTGGTCAACTTGGGCGGATGCGTGGCGTTCACCACGCGATTCGTGTTG
TCCAGCGTCTTCGAGTGCTGCAGCTGCATCAGATAGTGTTGCTGCGTCGG
CTTATGCAGCGCCAGCTGCGAGAGTGCATCATCGATGGTGAACCACTGGC
GCTTGCGACCGATGCTCCGCGAATCCTCCCACTCGTCCAGTTCCTGAGTC
ACGTTCATCACGAACACCTCGGTGCGATGCATGTGGTCATTGTTCTCGAA
TACACCGAGACAACGACCCAGATCGCCAACCACGCCGGCTTCTTCGAGCA
CTTCGCGCACGGCTGTCACCGATGACTCCTCTTCTGGTTCAACGCCGCCT
CCTGGAACGATCCACAACTCCGGGCGACGAGATGAGGTTACCAAGAGTAC
CTCCGCCTCATTCTCCGATTTCACGCAAATACAAGCAGCCCGGCGCCTAA
ATCCATCCTTGTCGTAGATGCGAGTCGAGTTGGGCTTCTCCTTGACCATG
TCGACTGATAACT
BO15128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6391-PA | 534 | Aps-RA | 206..531 | 344..19 | 1630 | 100 | Minus |
CG6391-PB | 534 | Aps-RB | 206..531 | 344..19 | 1630 | 100 | Minus |
CG6391-PC | 534 | Aps-RC | 206..531 | 344..19 | 1630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 2744 | CG6391-RC | 854..1386 | 551..19 | 2665 | 100 | Minus |
Aps-RB | 2364 | CG6391-RB | 1145..1677 | 551..19 | 2665 | 100 | Minus |
Aps-RA | 2565 | CG6391-RA | 677..1207 | 549..19 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10896134..10896411 | 19..296 | 1390 | 100 | Plus |
3L | 28110227 | 3L | 10896469..10896626 | 295..452 | 790 | 100 | Plus |
3L | 28110227 | 3L | 10896777..10896877 | 449..549 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:21:26 has no hits.
BO15128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:18 Download gff for
BO15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-PA | 190..534 | 15..361 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:38 Download gff for
BO15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6391-PC | 190..534 | 15..361 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:51:33 Download gff for
BO15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1682 | 14..551 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:16 Download gff for
BO15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1682 | 14..551 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:16 Download gff for
BO15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10896469..10896624 | 295..450 | 100 | <- | Plus |
3L | 10896779..10896882 | 451..554 | 98 | | Plus |
3L | 10896129..10896409 | 14..294 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:51:33 Download gff for
BO15128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10889229..10889509 | 14..294 | 99 | <- | Plus |
arm_3L | 10889569..10889724 | 295..450 | 100 | <- | Plus |
arm_3L | 10889879..10889982 | 451..554 | 98 | | Plus |
BO15128.5prime Sequence
563 bp (563 high quality bases) assembled on 2006-06-16
> BO15128.5prime
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCAGCA
AGCTTTCTAGACC
BO15128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6391-PA | 534 | Aps-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
CG6391-PB | 534 | Aps-RB | 1..531 | 17..547 | 2655 | 100 | Plus |
CG6391-PC | 534 | Aps-RC | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 2744 | CG6391-RC | 854..1386 | 15..547 | 2665 | 100 | Plus |
Aps-RB | 2364 | CG6391-RB | 1145..1677 | 15..547 | 2665 | 100 | Plus |
Aps-RA | 2565 | CG6391-RA | 677..1207 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10896134..10896411 | 547..270 | 1390 | 100 | Minus |
3L | 28110227 | 3L | 10896469..10896626 | 271..114 | 790 | 100 | Minus |
3L | 28110227 | 3L | 10896777..10896877 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:13:31 has no hits.
BO15128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:19 Download gff for
BO15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-PA | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:40 Download gff for
BO15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6391-PC | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:45 Download gff for
BO15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1682 | 15..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:42 Download gff for
BO15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1145..1682 | 15..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:42 Download gff for
BO15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10896129..10896409 | 272..552 | 99 | <- | Minus |
3L | 10896469..10896624 | 116..271 | 100 | <- | Minus |
3L | 10896779..10896882 | 12..115 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:45 Download gff for
BO15128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10889229..10889509 | 272..552 | 99 | <- | Minus |
arm_3L | 10889569..10889724 | 116..271 | 100 | <- | Minus |
arm_3L | 10889879..10889982 | 12..115 | 98 | | Minus |
BO15128.complete Sequence
565 bp (565 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ638737
> BO15128.complete
GAAGTTATCAGTCGACATGGTCAAGGAGAAGCCCAACTCGACTCGCATCT
ACGACAAGGATGGATTTAGGCGCCGGGCTGCTTGTATTTGCGTGAAATCG
GAGAATGAGGCGGAGGTACTCTTGGTAACCTCATCTCGTCGCCCGGAGTT
GTGGATCGTTCCAGGAGGCGGCGTTGAACCAGAAGAGGAGTCATCGGTGA
CAGCCGTGCGCGAAGTGCTCGAAGAAGCCGGCGTGGTTGGCGATCTGGGT
CGTTGTCTCGGTGTATTCGAGAACAATGACCACATGCATCGCACCGAGGT
GTTCGTGATGAACGTGACTCAGGAACTGGACGAGTGGGAGGATTCGCGGA
GCATCGGTCGCAAGCGCCAGTGGTTCACCATCGATGATGCACTCTCGCAG
CTGGCGCTGCATAAGCCGACGCAGCAACACTATCTGATGCAGCTGCAGCA
CTCGAAGACGCTGGACAACACGAATCGCGTGGTGAACGCCACGCATCCGC
CCAAGTTGACCAATGCCGCCACCCCAGCCGCATCTCCCACTACGGCAGCA
AGCTTTCTAGACCAT
BO15128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 534 | CG6391-PC | 1..531 | 17..547 | 2655 | 100 | Plus |
Aps-RB | 534 | CG6391-PB | 1..531 | 17..547 | 2655 | 100 | Plus |
Aps-RA | 534 | CG6391-PA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-RC | 2744 | CG6391-RC | 854..1386 | 15..547 | 2665 | 100 | Plus |
Aps-RB | 2364 | CG6391-RB | 1145..1677 | 15..547 | 2665 | 100 | Plus |
Aps-RA | 2565 | CG6391-RA | 677..1207 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10896134..10896411 | 547..270 | 1390 | 100 | Minus |
3L | 28110227 | 3L | 10896469..10896626 | 271..114 | 790 | 100 | Minus |
3L | 28110227 | 3L | 10896777..10896877 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:21:12 has no hits.
BO15128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:19 Download gff for
BO15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RC | 1..534 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:41 Download gff for
BO15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1169..1706 | 15..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:00 Download gff for
BO15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1147..1677 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:19 Download gff for
BO15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1169..1706 | 15..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:40 Download gff for
BO15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aps-RB | 1147..1677 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:40 Download gff for
BO15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10896132..10896409 | 272..549 | 99 | <- | Minus |
3L | 10896469..10896624 | 116..271 | 100 | <- | Minus |
3L | 10896779..10896877 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:00 Download gff for
BO15128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10889879..10889977 | 17..115 | 100 | | Minus |
arm_3L | 10889232..10889509 | 272..549 | 99 | <- | Minus |
arm_3L | 10889569..10889724 | 116..271 | 100 | <- | Minus |
BO15128.pep Sequence
Translation from 16 to 565
> BO15128.pep
MVKEKPNSTRIYDKDGFRRRAACICVKSENEAEVLLVTSSRRPELWIVPG
GGVEPEEESSVTAVREVLEEAGVVGDLGRCLGVFENNDHMHRTEVFVMNV
TQELDEWEDSRSIGRKRQWFTIDDALSQLALHKPTQQHYLMQLQHSKTLD
NTNRVVNATHPPKLTNAATPAASPTTAASFLDH
BO15128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aps-PC | 177 | CG6391-PC | 1..177 | 1..177 | 926 | 100 | Plus |
Aps-PB | 177 | CG6391-PB | 1..177 | 1..177 | 926 | 100 | Plus |
Aps-PA | 177 | CG6391-PA | 1..177 | 1..177 | 926 | 100 | Plus |