Clone Sequence Records
BO15129.3prime Sequence
770 bp (711 high quality bases) assembled on 2006-06-16
> BO15129.3prime
ATGGTCTAGAAAGCTTGCCAAAACTTTCGCCTCGGACAGATCGTCCAGTG
GCTTGCTGGGCGGGGGGATCTTGTACTCGGTCTCGGGCGTCTCGTAGATC
TTCTCCTCCTTGGGCTCCACAACGGACACATTGTCGGGCAGCGGCTTCTT
GGGGCCGATCTTGTTCTTGGGGTCGTAGGGCAACATGACCTTGACCTTGA
TACCAAGCACTCCCTGGCGGAGGAGCACATGACGGGTGGCGGTCTCGACA
TAGTCGTTGCACGGATCTCCCGAATGGATCATCAGGCCATCGACGAATTT
CATCGACTTGGCACGCTGACCACGCAGTTTGCCGGACACGACGACCTCGC
AGCCCTTGGCTCCCGACTCCATGATGTAGCGGAGCACACCATAGCAAGCA
CGACGGACGGCCAGTCCTCCGGTGAGCTTGTACCTCAGCGACTCAGCCTG
GGCAATGGCGCACAGGCCACGAGCGGCCACCTTCTCGGCGTACAACTCAA
TGCGTCCGGTCTCGAAGTTGAAACGCTTCTGCACCATGGCGGTCAGCTCC
CGAATGCGACGGCCCTTCTCGCCCAGCACCTGCTGGGTCTTGGTGGCCAT
GATGATGATCTCAGTGCGAGAGGGGGTCACACGGACCTCCACGCCGGAGT
AGCCATCCTCGGCGAGTTCGCGAGTCAGGAACTCGTTCAATTCAGCCTTG
AAGATGCCATCGGAAACGAACTTGCGTTTCTTGGAAATCGGAAGGTTCGC
ATTCATGTCGACTGATAACT
BO15129.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6779-PA | 741 | RpS3-RA | 1..738 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS3-RB | 1133 | CG6779-RB | 44..781 | 756..19 | 3690 | 100 | Minus |
| RpS3-RA | 854 | CG6779-RA | 44..781 | 756..19 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23359152..23359855 | 722..19 | 3520 | 100 | Minus |
| 3R | 32079331 | 3R | 23358855..23358890 | 756..721 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:55:11 has no hits.
BO15129.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:34 Download gff for
BO15129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6779-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:55 Download gff for
BO15129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 38..788 | 12..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:06:27 Download gff for
BO15129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 38..788 | 12..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:06:27 Download gff for
BO15129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23358849..23358890 | 721..762 | 95 | -> | Minus |
| 3R | 23359154..23359862 | 12..720 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:55 Download gff for
BO15129.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19184571..19184612 | 721..762 | 95 | -> | Minus |
| arm_3R | 19184876..19185584 | 12..720 | 99 | | Minus |
BO15129.5prime Sequence
770 bp (770 high quality bases) assembled on 2006-06-16
> BO15129.5prime
GAAGTTATCAGTCGACATGAATGCGAACCTTCCGATTTCCAAGAAACGCA
AGTTCGTTTCCGATGGCATCTTCAAGGCTGAATTGAACGAGTTCCTGACT
CGCGAACTCGCCGAGGATGGCTACTCCGGCGTGGAGGTCCGTGTGACCCC
CTCTCGCACTGAGATCATCATCATGGCCACCAAGACCCAGCAGGTGCTGG
GCGAGAAGGGCCGTCGCATTCGGGAGCTGACCGCCATGGTGCAGAAGCGT
TTCAACTTCGAGACCGGACGCATTGAGTTGTACGCCGAGAAGGTGGCCGC
TCGTGGCCTGTGCGCCATTGCCCAGGCTGAGTCGCTGAGGTACAAGCTCA
CCGGAGGACTGGCCGTCCGTCGTGCTTGCTATGGTGTGCTCCGCTACATC
ATGGAGTCGGGAGCCAAGGGCTGCGAGGTCGTCGTGTCCGGCAAACTGCG
TGGTCAGCGTGCCAAGTCGATGAAATTCGTCGATGGCCTGATGATCCATT
CGGGAGATCCGTGCAACGACTATGTCGAGACCGCCACCCGTCATGTGCTC
CTCCGCCAGGGAGTGCTTGGTATCAAGGTCAAGGTCATGTTGCCCTACGA
CCCCAAGAACAAGATCGGCCCCAAGAAGCCGCTGCCCGACAATGTGTCCG
TTGTGGAGCCCAAGGAGGAGAAGATCTACGAGACGCCCGAGACCGAGTAC
AAGATCCCCCCGCCCAGCAAGCCACTGGACGATCTGTCCGAGGCGAAAGT
TTTGGCAAGCTTTCTAGACC
BO15129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6779-PA | 741 | RpS3-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS3-RB | 1133 | CG6779-RB | 44..781 | 17..754 | 3690 | 100 | Plus |
| RpS3-RA | 854 | CG6779-RA | 44..781 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23359152..23359855 | 51..754 | 3520 | 100 | Plus |
| 3R | 32079331 | 3R | 23358855..23358890 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:49:21 has no hits.
BO15129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:20 Download gff for
BO15129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:42 Download gff for
BO15129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6779-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:56 Download gff for
BO15129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 38..788 | 11..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:58 Download gff for
BO15129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 38..788 | 11..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:58 Download gff for
BO15129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23358849..23358890 | 11..52 | 95 | -> | Plus |
| 3R | 23359154..23359862 | 53..761 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:56 Download gff for
BO15129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19184571..19184612 | 11..52 | 95 | -> | Plus |
| arm_3R | 19184876..19185584 | 53..761 | 99 | | Plus |
BO15129.complete Sequence
772 bp (772 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633351
> BO15129.complete
GAAGTTATCAGTCGACATGAATGCGAACCTTCCGATTTCCAAGAAACGCA
AGTTCGTTTCCGATGGCATCTTCAAGGCTGAATTGAACGAGTTCCTGACT
CGCGAACTCGCCGAGGATGGCTACTCCGGCGTGGAGGTCCGTGTGACCCC
CTCTCGCACTGAGATCATCATCATGGCCACCAAGACCCAGCAGGTGCTGG
GCGAGAAGGGCCGTCGCATTCGGGAGCTGACCGCCATGGTGCAGAAGCGT
TTCAACTTCGAGACCGGACGCATTGAGTTGTACGCCGAGAAGGTGGCCGC
TCGTGGCCTGTGCGCCATTGCCCAGGCTGAGTCGCTGAGGTACAAGCTCA
CCGGAGGACTGGCCGTCCGTCGTGCTTGCTATGGTGTGCTCCGCTACATC
ATGGAGTCGGGAGCCAAGGGCTGCGAGGTCGTCGTGTCCGGCAAACTGCG
TGGTCAGCGTGCCAAGTCGATGAAATTCGTCGATGGCCTGATGATCCATT
CGGGAGATCCGTGCAACGACTATGTCGAGACCGCCACCCGTCATGTGCTC
CTCCGCCAGGGAGTGCTTGGTATCAAGGTCAAGGTCATGTTGCCCTACGA
CCCCAAGAACAAGATCGGCCCCAAGAAGCCGCTGCCCGACAATGTGTCCG
TTGTGGAGCCCAAGGAGGAGAAGATCTACGAGACGCCCGAGACCGAGTAC
AAGATCCCCCCGCCCAGCAAGCCACTGGACGATCTGTCCGAGGCGAAAGT
TTTGGCAAGCTTTCTAGACCAT
BO15129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS3-RB | 741 | CG6779-PB | 1..738 | 17..754 | 3690 | 100 | Plus |
| RpS3-RA | 741 | CG6779-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS3-RB | 1133 | CG6779-RB | 44..781 | 17..754 | 3690 | 100 | Plus |
| RpS3-RA | 854 | CG6779-RA | 44..781 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23359152..23359855 | 51..754 | 3520 | 100 | Plus |
| 3R | 32079331 | 3R | 23358855..23358890 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:01:14 has no hits.
BO15129.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:20 Download gff for
BO15129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:43 Download gff for
BO15129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 47..797 | 11..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:38 Download gff for
BO15129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 44..781 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:20 Download gff for
BO15129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 47..797 | 11..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:29 Download gff for
BO15129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS3-RA | 44..781 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:29 Download gff for
BO15129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23358855..23358890 | 17..52 | 100 | -> | Plus |
| 3R | 23359154..23359855 | 53..756 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:38 Download gff for
BO15129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19184577..19184612 | 17..52 | 100 | -> | Plus |
| arm_3R | 19184876..19185577 | 53..756 | 99 | | Plus |
BO15129.pep Sequence
Translation from 16 to 772
> BO15129.pep
MNANLPISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEI
IIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCA
IAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAK
SMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI
GPKKPLPDNVSVVEPKEEKIYETPETEYKIPPPSKPLDDLSEAKVLASFL
DH
BO15129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS3-PB | 246 | CG6779-PB | 1..246 | 1..246 | 1252 | 100 | Plus |
| RpS3-PA | 246 | CG6779-PA | 1..246 | 1..246 | 1252 | 100 | Plus |
