Clone Sequence Records
BO15130.3prime Sequence
848 bp (808 high quality bases) assembled on 2006-06-16
> BO15130.3prime
ATGGTCTAGAAAGCTTGCGGCGGTGGGCAGGAAGGTGAGCTTTTCGTTAA
GCTGCAGCTGGGTTTTGATGAGCTGGGAGAGCGTGATGACCAGCAGAAGG
TTGCGTACGTTGGCGTTGAACATCTGAGTGAACTGCTCGTGGGTCATGTG
CGGCACGGAGTGGATAAGGTCTAGCAGCTGGCGTCCGACGGCGTTGTCGG
GGGTTACCTTGTGAGCGATCACGTCGTCAACGTACTTGAGAATAAGATCC
AGCAGGGACTGCAGCTTCGTGGAGGCCTCCGAGATTTGGGCCAGGTCCAG
CATTGGCGGAACGGTCTTGGGACGGTGAGCGGGCGAAACGCCTACGGTCT
TCTGAAGCAGCTTGAGCCCAAATGTCTCCGGCTCGTAGCTGGTCAGCTCG
ACAGGAATGGGCGTGAACATGCAGCCGCTCTTGCCGCCGGGAACTCCTAG
TTGAATGCAGACATAAGCACGCAGACCCATACGTCCGCCCTGCAGCGAAG
TGTCCACGGTGAGGTGAACCGGGTTGTTGCATTCGCGGGCGTAATACTCG
TGGATCACCGAGCTGTGGTTGGTAACGTCGTTGCCGGTGGCCCACCAGCC
TACCACGCTCTCGTTGGAGTTCACCTTGCGGTTGAGGTCGTACATGTCCA
GGGCGTAGCTCAGCTCTGCCTCCACCTGGTCATCGTGCTCCTTGTGCGGC
ACACAGAAACAGTTGGTAACCTCCACCACACCTTTGTCCACAGAGCCGAG
CAGGGTGCCGATGACGCGGTGCGAGTCCGCGTTCCGCCGCTCGAAGGCGT
CCACCACCTGGAAAAGCACCACCGGGTGCACGCGCACGGTCAGATTGA
BO15130.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9769-PA | 843 | CG9769-RA | 11..840 | 848..19 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9769-RA | 1301 | CG9769-RA | 108..937 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4713246..4714075 | 19..848 | 4150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:00:03 has no hits.
BO15130.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:34 Download gff for
BO15130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-PA | 12..843 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:21:55 Download gff for
BO15130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 109..937 | 19..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:21 Download gff for
BO15130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 109..937 | 19..847 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:21 Download gff for
BO15130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4713246..4714074 | 19..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:21:55 Download gff for
BO15130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 538968..539796 | 19..847 | 100 | | Plus |
BO15130.5prime Sequence
872 bp (818 high quality bases) assembled on 2006-06-16
> BO15130.5prime
GAAGTTATCAGTCGACATGTCGGCTCTCAATCTGACCGTGCGCGTGCACC
CGGTGGTGCTTTTCCAGGTGGTGGACGCCTTCGAGCGGCGGAACGCGGAC
TCGCACCGCGTCATCGGCACCCTGCTCGGCTCTGTGGACAAAGGTGTGGT
GGAGGTTACCAACTGTTTCTGTGTGCCGCACAAGGAGCACGATGACCAGG
TGGAGGCAGAGCTGAGCTACGCCCTGGACATGTACGACCTCAACCGCAAG
GTGAACTCCAACGAGAGCGTGGTAGGCTGGTGGGCCACCGGCAACGACGT
TACCAACCACAGCTCGGTGATCCACGAGTATTACGCCCGCGAATGCAACA
ACCCGGTTCACCTCACCGTGGACACTTCGCTGCAGGGCGGACGTATGGGT
CTGCGTGCTTATGTCTGCATTCAACTAGGAGTTCCCGGCGGCAAGAGCGG
CTGCATGTTCACGCCCATTCCTGTCGAGCTGACCAGCTACGAGCCGGAGA
CATTTGGGCTCAAGCTGCTTCAGAAGACCGTAGGCGTTTCGCCCGCTCAC
CGTCCCAAGACCGTTCCGCCAATGCTGGACCTGGCCCAAATCTCGGAGGC
CTCCACGAAGCTGCAGTCCCTGCTGGATCTTATTCTCAAGTACGTTGACG
ACGTGATCGCTCACAAGGTAACCCCCGACAACGCCGTCGGACGCCAGCTG
CTAGACCTTATCCACTCCGTGCCGCACATGACCCACGAGCAGTTCACTCA
GATGTTCAACGCCAACGTACGCAACCTTCTGCTGGTCATCACGCTCTCCC
AGCTCATCAAAACCCAGCTGCAGCTTAACGAAAAGCTCACCTTCCTGCCC
ACCGCCGCAAGCTTTCTAAACC
BO15130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9769-PA | 843 | CG9769-RA | 1..808 | 17..824 | 3990 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9769-RA | 1301 | CG9769-RA | 97..937 | 16..856 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4713246..4714086 | 856..16 | 4205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:59:04 has no hits.
BO15130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:21 Download gff for
BO15130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-PA | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:43 Download gff for
BO15130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-PA | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:32 Download gff for
BO15130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 97..937 | 16..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:50 Download gff for
BO15130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 97..937 | 16..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:50 Download gff for
BO15130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4713246..4714086 | 16..856 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:32 Download gff for
BO15130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 538968..539808 | 16..856 | 100 | | Minus |
BO15130.complete Sequence
874 bp (874 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633352
> BO15130.complete
GAAGTTATCAGTCGACATGTCGGCTCTCAATCTGACCGTGCGCGTGCACC
CGGTGGTGCTTTTCCAGGTGGTGGACGCCTTCGAGCGGCGGAACGCGGAC
TCGCACCGCGTCATCGGCACCCTGCTCGGCTCTGTGGACAAAGGTGTGGT
GGAGGTTACCAACTGTTTCTGTGTGCCGCACAAGGAGCACGATGACCAGG
TGGAGGCAGAGCTGAGCTACGCCCTGGACATGTACGACCTCAACCGCAAG
GTGAACTCCAACGAGAGCGTGGTAGGCTGGTGGGCCACCGGCAACGACGT
TACCAACCACAGCTCGGTGATCCACGAGTATTACGCCCGCGAATGCAACA
ACCCGGTTCACCTCACCGTGGACACTTCGCTGCAGGGCGGACGTATGGGT
CTGCGTGCTTATGTCTGCATTCAACTAGGAGTTCCCGGCGGCAAGAGCGG
CTGCATGTTCACGCCCATTCCTGTCGAGCTGACCAGCTACGAGCCGGAGA
CATTTGGGCTCAAGCTGCTTCAGAAGACCGTAGGCGTTTCGCCCGCTCAC
CGTCCCAAGACCGTTCCGCCAATGCTGGACCTGGCCCAAATCTCGGAGGC
CTCCACGAAGCTGCAGTCCCTGCTGGATCTTATTCTCAAGTACGTTGACG
ACGTGATCGCTCACAAGGTAACCCCCGACAACGCCGTCGGACGCCAGCTG
CTAGACCTTATCCACTCCGTGCCGCACATGACCCACGAGCAGTTCACTCA
GATGTTCAACGCCAACGTACGCAACCTTCTGCTGGTCATCACGCTCTCCC
AGCTCATCAAAACCCAGCTGCAGCTTAACGAAAAGCTCACCTTCCTGCCC
ACCGCCGCAAGCTTTCTAGACCAT
BO15130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9769-RA | 843 | CG9769-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9769-RA | 1301 | CG9769-RA | 97..937 | 16..856 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4713246..4714086 | 856..16 | 4205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:32:23 has no hits.
BO15130.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:21 Download gff for
BO15130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 1..843 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:44 Download gff for
BO15130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 111..951 | 16..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:57:34 Download gff for
BO15130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 98..937 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:21 Download gff for
BO15130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 111..951 | 16..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:48 Download gff for
BO15130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9769-RA | 98..937 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:48 Download gff for
BO15130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4713244..4714085 | 17..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:57:34 Download gff for
BO15130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 538966..539807 | 17..858 | 99 | | Minus |
BO15130.pep Sequence
Translation from 16 to 874
> BO15130.pep
MSALNLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSVDKGVVEVTNC
FCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSS
VIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTP
IPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQ
SLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNAN
VRNLLLVITLSQLIKTQLQLNEKLTFLPTAASFLDH
BO15130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9769-PA | 280 | CG9769-PA | 1..280 | 1..280 | 1453 | 100 | Plus |
CG8335-PA | 286 | CG8335-PA | 7..281 | 3..275 | 596 | 40.1 | Plus |
Rpn8-PC | 338 | CG3416-PC | 11..276 | 8..271 | 259 | 28.7 | Plus |
Rpn8-PA | 338 | CG3416-PA | 11..276 | 8..271 | 259 | 28.7 | Plus |
Rpn8-PB | 358 | CG3416-PB | 11..276 | 8..271 | 259 | 28.7 | Plus |