Clone Sequence Records
BO15133.5prime Sequence
374 bp (374 high quality bases) assembled on 2006-06-16
> BO15133.5prime
GAAGTTATCAGTCGACATGTCGCAGTTTAGCACCGTTGCCGCATTCCTAC
TCCTCGGCCTGGTCGTCATCCTTGGCGGCCACGTTGGCCAGGCGGCCGTT
GCCAAGGTCAAACTGAACAATTCATCGCATCCCGGCAAGTGTGTGCTGGA
CACGAACACGATCCTGTCGCCCGGGGAGACGGGTCTGGCGCCGGATCTGC
CATGCGTGCGGGCCGAATGCCATGCGGATGGCTTGGTGACCTTCAAAACC
TGCGATGCAGTCGCTCCGCCACCGGGCTGCAAGCAGCGCGACTTTGTGAA
CATCAATCGCGAATTTCCCGCTTGCTGCGAGCGGAAATACAATTGCGACA
AGCACATCGCAAGCTTTCTAGACC
BO15133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2444-PA | 345 | CG2444-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2444-RB | 913 | CG2444-RB | 373..714 | 17..358 | 1710 | 100 | Plus |
CG2444-RA | 638 | CG2444-RA | 98..439 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11704509..11704741 | 358..126 | 1165 | 100 | Minus |
X | 23542271 | X | 11704820..11704928 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:03:09 has no hits.
BO15133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:22 Download gff for
BO15133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-PA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:44 Download gff for
BO15133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-PA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:33 Download gff for
BO15133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 94..442 | 9..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:40 Download gff for
BO15133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 94..442 | 9..362 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:40 Download gff for
BO15133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11704506..11704741 | 126..362 | 99 | <- | Minus |
X | 11704820..11704932 | 9..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:33 Download gff for
BO15133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11598539..11598774 | 126..362 | 99 | <- | Minus |
arm_X | 11598853..11598965 | 9..125 | 96 | | Minus |
BO15133.3prime Sequence
374 bp (374 high quality bases) assembled on 2006-06-16
> BO15133.3prime
ATGGTCTAGAAAGCTTGCGATGTGCTTGTCGCAATTGTATTTCCGCTCGC
AGCAAGCGGGAAATTCGCGATTGATGTTCACAAAGTCGCGCTGCTTGCAG
CCCGGTGGCGGAGCGACTGCATCGCAGGTTTTGAAGGTCACCAAGCCATC
CGCATGGCATTCGGCCCGCACGCATGGCAGATCCGGCGCCAGACCCGTCT
CCCCGGGCGACAGGATCGTGTTCGTGTCCAGCACACACTTGCCGGGATGC
GATGAATTGTTCAGTTTGACCTTGGCAACGGCCGCCTGGCCAACGTGGCC
GCCAAGGATGACGACCAGGCCGAGGAGTAGGAATGCGGCAACGGTGCTAA
ACTGCGACATGTCGACTGATAACT
BO15133.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2444-PA | 345 | CG2444-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2444-RB | 913 | CG2444-RB | 373..714 | 360..19 | 1710 | 100 | Minus |
CG2444-RA | 638 | CG2444-RA | 98..439 | 360..19 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11704509..11704741 | 19..251 | 1165 | 100 | Plus |
X | 23542271 | X | 11704820..11704928 | 252..360 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:03:38 has no hits.
BO15133.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:36 Download gff for
BO15133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-PA | 1..345 | 15..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:04 Download gff for
BO15133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 94..442 | 15..368 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:03 Download gff for
BO15133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 94..442 | 15..368 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:03 Download gff for
BO15133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11704506..11704741 | 15..251 | 99 | <- | Plus |
X | 11704820..11704932 | 252..368 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:04 Download gff for
BO15133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11598539..11598774 | 15..251 | 99 | <- | Plus |
arm_X | 11598853..11598965 | 252..368 | 96 | | Plus |
BO15133.complete Sequence
376 bp (376 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633353
> BO15133.complete
GAAGTTATCAGTCGACATGTCGCAGTTTAGCACCGTTGCCGCATTCCTAC
TCCTCGGCCTGGTCGTCATCCTTGGCGGCCACGTTGGCCAGGCGGCCGTT
GCCAAGGTCAAACTGAACAATTCATCGCATCCCGGCAAGTGTGTGCTGGA
CACGAACACGATCCTGTCGCCCGGGGAGACGGGTCTGGCGCCGGATCTGC
CATGCGTGCGGGCCGAATGCCATGCGGATGGCTTGGTGACCTTCAAAACC
TGCGATGCAGTCGCTCCGCCACCGGGCTGCAAGCAGCGCGACTTTGTGAA
CATCAATCGCGAATTTCCCGCTTGCTGCGAGCGGAAATACAATTGCGACA
AGCACATCGCAAGCTTTCTAGACCAT
BO15133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2444-RB | 345 | CG2444-PB | 1..342 | 17..358 | 1710 | 100 | Plus |
CG2444-RA | 345 | CG2444-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2444-RB | 913 | CG2444-RB | 373..714 | 17..358 | 1710 | 100 | Plus |
CG2444-RA | 638 | CG2444-RA | 98..439 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11704509..11704741 | 358..126 | 1165 | 100 | Minus |
X | 23542271 | X | 11704820..11704928 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:11:08 has no hits.
BO15133.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:39 Download gff for
BO15133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:56 Download gff for
BO15133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 80..428 | 9..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:47 Download gff for
BO15133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 98..439 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:40 Download gff for
BO15133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 80..428 | 9..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:51 Download gff for
BO15133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2444-RA | 98..439 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:51 Download gff for
BO15133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11704507..11704741 | 126..360 | 99 | <- | Minus |
X | 11704820..11704928 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:47 Download gff for
BO15133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11598540..11598774 | 126..360 | 99 | <- | Minus |
arm_X | 11598853..11598961 | 17..125 | 100 | | Minus |
BO15133.pep Sequence
Translation from 16 to 376
> BO15133.pep
MSQFSTVAAFLLLGLVVILGGHVGQAAVAKVKLNNSSHPGKCVLDTNTIL
SPGETGLAPDLPCVRAECHADGLVTFKTCDAVAPPPGCKQRDFVNINREF
PACCERKYNCDKHIASFLDH
BO15133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2444-PB | 114 | CG2444-PB | 1..114 | 1..114 | 616 | 100 | Plus |
CG2444-PA | 114 | CG2444-PA | 1..114 | 1..114 | 616 | 100 | Plus |
CG34178-PC | 112 | CG34178-PC | 8..112 | 10..111 | 146 | 32.4 | Plus |
CG34178-PB | 112 | CG34178-PB | 8..112 | 10..111 | 146 | 32.4 | Plus |
CG34178-PA | 112 | CG34178-PA | 8..112 | 10..111 | 146 | 32.4 | Plus |