Clone Sequence Records
BO15135.3prime Sequence
805 bp (714 high quality bases) assembled on 2006-05-29
> BO15135.3prime
ATGGTCTAGAAAGCTTGCTAGCCACGTTCCCTTGTCTTTGTCCACATCCA
TGGCCGGATTGACAAAGGCCCTCTCTGCCATATAATTCTGCGTATAATCC
GTCGGCGGCGGAGCTGAGGGACTGGGTATGTCGAAGACCGGATAGAGTGG
CTTATAAGCACCGCCATCCAAACTGAGAGTATTGGGCGGTACTGGTTCCG
GGTCGTCTAAGTCGTCTGACCTCGTTGCAGCCGTGCTGCGCATGTGAACA
GCCTCCTGATAGTTGGGCGGAGGAATGGATGCGTCGACAGACCATGGACT
TGAAGAGTTTGGAGCAGTGGCTACTTCTTCAACAGCCAGCTCATTAACAT
TCAGCTGGGGGACGAAACCCCGAGGCTGGATTGGTACGTGTTGTGCAAGA
GGGACACTGCCAATGGTCAGCGGAATGGTGACAACCTCGTTGTTGTGGCA
ACCCTTCACCCTGGCCTCCACCTCCACTTGGTAGGCGATCTGGATGATGC
CGCACAGGTTGAAGCAGGTGGGCGGAGTGGCCGGGACTCTGATCTCATAG
CTAAATAGCTTCTTGCAGTTCCTTTGCACAGCGTCCCCCTTGAAGGTGTT
TACCACCAACCTCTCGGACGTGGTATTGGGCATCGAAGGTGGCTTACTGT
GGTATGTCACCAGCATCACAAAACTAATGAGGAGCTGCTCCACCGGAATG
TGGCTATCGTTTGTGACCGGCACGCTAAGGGGAACATTCTGGCCAGGTAA
CAATCCTGTCTGTGGAACGGTCAGTTGGAGGGCCAACGGATCTGATCGGC
AGGGC
BO15135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-PA | 1302 | CG18745-RA | 517..1299 | 801..19 | 3840 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-RA | 1567 | CG18745-RA | 679..1465 | 805..19 | 3875 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7784264..7784796 | 273..805 | 2605 | 99.2 | Plus |
3R | 32079331 | 3R | 7783945..7784198 | 19..272 | 1270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:14:29 has no hits.
BO15135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:23 Download gff for
BO15135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-PA | 513..1302 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:46 Download gff for
BO15135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-PA | 513..1302 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:30:52 Download gff for
BO15135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 679..1465 | 19..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:39:49 Download gff for
BO15135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 679..1465 | 19..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:39:49 Download gff for
BO15135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7783945..7784198 | 19..272 | 100 | <- | Plus |
3R | 7784264..7784796 | 273..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:30:52 Download gff for
BO15135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3609667..3609920 | 19..272 | 100 | <- | Plus |
arm_3R | 3609986..3610518 | 273..805 | 99 | | Plus |
BO15135.5prime Sequence
778 bp (703 high quality bases) assembled on 2006-06-16
> BO15135.5prime
GAAGTTATCAGTCGACATGACTGTTACCTGTGAAATTGATTTCGATAACA
ATCCCCATGGCACCTACTTTGGGGGCGAGGTACTCACTGGCAGAGTTACG
TTGAAGCTGGACAAGATGAAGTTGGTAAAAGCCATCACCTTGAATATAAC
CGGATACGCAGAGACGCGTTGGATTGAAAGGGTGACCACAAACAGAAGGA
GGAGACGTCGCACATTCTGCGGCCGCGAGGATTACATAGCGTCCAAAACA
TTTTTGGTGGGATCCAATCTGAGCAGCCAAGTATCCATTGAAGCGGGAAT
TCACACTTACAACTTCGTGTGCCTGATTCCCACCGAATGTCCTTCGTCCT
TCGAGGGATCACACGGCAGGGTGCGGTACATGGCAACCGTAACCCTCGTC
AGGCCCTGGAAATTCGATCAGAGCTATACCCGATGCTTTACGGTGCTAAA
AGTGATGGACTTGAACTTCGATAGTCCACTGCTAAGGGTACCCGCCCACA
GTGAAACCTCGAAGACCTACTGCTGCTGGCCTTGCCGATCAGATCCGTTG
GCCCTCCAACTGACCGTTCCACAGACAGGATTTGTACCTGGCCAGAATGT
TCCCCTTAGCGTGCTGGTCACAAACGATAGCCACATTCCGGTGGAGCAGC
TCCTCATTAGTTTTGTGATGCTGGTGACATACCACAGTAAGCCACCTTCG
ATGCCCAATACCACGTCCGAGAGGTTGGTGGTAAACACCTTCAAGGGGGA
CGCTGTGCAAAGGAACTGCAAGAAGCTA
BO15135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-PA | 1302 | CG18745-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-RA | 1567 | CG18745-RA | 167..928 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7784547..7784838 | 778..487 | 1460 | 100 | Minus |
3R | 32079331 | 3R | 7784901..7785116 | 491..276 | 1080 | 100 | Minus |
3R | 32079331 | 3R | 7785173..7785319 | 276..130 | 735 | 100 | Minus |
3R | 32079331 | 3R | 7785839..7785953 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:41:45 has no hits.
BO15135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:25 Download gff for
BO15135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:47 Download gff for
BO15135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:37 Download gff for
BO15135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..927 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:47:40 Download gff for
BO15135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..927 | 17..777 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:47:40 Download gff for
BO15135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7784548..7784837 | 488..777 | 100 | <- | Minus |
3R | 7784905..7785116 | 276..487 | 100 | <- | Minus |
3R | 7785174..7785317 | 132..275 | 100 | <- | Minus |
3R | 7785839..7785953 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:37 Download gff for
BO15135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3610270..3610559 | 488..777 | 100 | <- | Minus |
arm_3R | 3610627..3610838 | 276..487 | 100 | <- | Minus |
arm_3R | 3610896..3611039 | 132..275 | 100 | <- | Minus |
arm_3R | 3611561..3611675 | 17..131 | 100 | | Minus |
BO15135.complete Sequence
1333 bp (1333 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633354
> BO15135.complete
GAAGTTATCAGTCGACATGACTGTTACCTGTGAAATTGATTTCGATAACA
ATCCCCATGGCACCTACTTTGGGGGCGAGGTACTCACTGGCAGAGTTACG
TTGAAGCTGGACAAGATGAAGTTGGTAAAAGCCATCACCTTGAATATAAC
CGGATACGCAGAGACGCGTTGGATTGAAAGGGTGACCACAAACAGAAGGA
GGAGACGTCGCACATTCTGCGGCCGCGAGGATTACATAGCGTCCAAAACA
TTTTTGGTGGGATCCAATCTGAGCAGCCAAGTATCCATTGAAGCGGGAAT
TCACACTTACAACTTCGTGTGCCTGATTCCCACCGAATGTCCTTCGTCCT
TCGAGGGATCACACGGCAGGGTGCGGTACATGGCAACCGTAACCCTCGTC
AGGCCCTGGAAATTCGATCAGAGCTATACCCGATGCTTTACGGTGCTAAA
AGTGATGGACTTGAACTTCGATAGTCCACTGCTAAGGGTACCCGCCCACA
GTGAAACCTCGAAGACCTACTGCTGCTGGCCTTGCCGATCAGATCCGTTG
GCCCTCCAACTGACCGTTCCACAGACAGGATTTGTACCTGGCCAGAATGT
TCCCCTTAGCGTGCTGGTCACAAACGATAGCCACATTCCGGTGGAGCAGC
TCCTCATTAGTTTTGTGATGCTGGTGACATACCACAGTAAGCCACCTTCG
ATGCCCAATACCACGTCCGAGAGGTTGGTGGTAAACACCTTCAAGGGGGA
CGCTGTGCAAAGGAACTGCAAGAAGCTATTTAGCTATGAGATCAGAGTCC
CGGCCACTCCGCCCACCTGCTTCAACCTGTGCGGCATCATCCAGATCGCC
TACCAAGTGGAGGTGGAGGCCAGGGTGAAGGGTTGCCACAACAACGAGGT
TGTCACCATTCCGCTGACCATTGGCAGTGTCCCTCTTGCACAACACGTAC
CAATCCAGCCTCGGGGTTTCGTCCCCCAGCTGAATGTTAATGAGCTGGCT
GTTGAAGAAGTAGCCACTGCTCCAAACTCTTCAAGTCCATGGTCTGTCGA
CGCATCCATTCCTCCGCCCAACTATCAGGAGGCTGTTCACATGCGCAGCA
CGGCTGCAACGAGGTCAGACGACTTAGACGACCCGGAACCAGTACCGCCC
AATACTCTCAGTTTGGATGGCGGTGCTTATAAGCCACTCTATCCGGTCTT
CGACATACCCAGTCCCTCAGCTCCGCCGCCGACGGATTATACGCAGAATT
ATATGGCAGAGAGGGCCTTTGTCAATCCGGCCATGGATGTGGACAAAGAC
AAGGGAACGTGGCTAGCAAGCTTTCTAGACCAT
BO15135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-RA | 1302 | CG18745-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-RA | 1567 | CG18745-RA | 167..1465 | 17..1315 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7784264..7784838 | 1061..487 | 2875 | 100 | Minus |
3R | 32079331 | 3R | 7783945..7784198 | 1315..1062 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 7784901..7785116 | 491..276 | 1080 | 100 | Minus |
3R | 32079331 | 3R | 7785173..7785319 | 276..130 | 735 | 100 | Minus |
3R | 32079331 | 3R | 7785839..7785953 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:23:14 has no hits.
BO15135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:22 Download gff for
BO15135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 1..1302 | 17..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:46 Download gff for
BO15135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..1465 | 17..1315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:20 Download gff for
BO15135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..1465 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:22 Download gff for
BO15135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..1465 | 17..1315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:18 Download gff for
BO15135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18745-RA | 167..1465 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:18 Download gff for
BO15135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7783942..7784198 | 1062..1317 | 99 | <- | Minus |
3R | 7784264..7784837 | 488..1061 | 100 | <- | Minus |
3R | 7784905..7785116 | 276..487 | 100 | <- | Minus |
3R | 7785174..7785317 | 132..275 | 100 | <- | Minus |
3R | 7785839..7785953 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:20 Download gff for
BO15135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3609664..3609920 | 1062..1317 | 99 | <- | Minus |
arm_3R | 3609986..3610559 | 488..1061 | 100 | <- | Minus |
arm_3R | 3610627..3610838 | 276..487 | 100 | <- | Minus |
arm_3R | 3610896..3611039 | 132..275 | 100 | <- | Minus |
arm_3R | 3611561..3611675 | 17..131 | 100 | | Minus |
BO15135.pep Sequence
Translation from 16 to 1333
> BO15135.pep
MTVTCEIDFDNNPHGTYFGGEVLTGRVTLKLDKMKLVKAITLNITGYAET
RWIERVTTNRRRRRRTFCGREDYIASKTFLVGSNLSSQVSIEAGIHTYNF
VCLIPTECPSSFEGSHGRVRYMATVTLVRPWKFDQSYTRCFTVLKVMDLN
FDSPLLRVPAHSETSKTYCCWPCRSDPLALQLTVPQTGFVPGQNVPLSVL
VTNDSHIPVEQLLISFVMLVTYHSKPPSMPNTTSERLVVNTFKGDAVQRN
CKKLFSYEIRVPATPPTCFNLCGIIQIAYQVEVEARVKGCHNNEVVTIPL
TIGSVPLAQHVPIQPRGFVPQLNVNELAVEEVATAPNSSSPWSVDASIPP
PNYQEAVHMRSTAATRSDDLDDPEPVPPNTLSLDGGAYKPLYPVFDIPSP
SAPPPTDYTQNYMAERAFVNPAMDVDKDKGTWLASFLDH
BO15135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18745-PA | 433 | CG18745-PA | 1..433 | 1..433 | 2310 | 100 | Plus |
CG18746-PA | 438 | CG18746-PA | 2..438 | 3..433 | 940 | 42.4 | Plus |
CG18748-PC | 409 | CG18748-PC | 1..390 | 1..397 | 880 | 42.4 | Plus |
CG18747-PB | 418 | CG18747-PB | 1..399 | 1..401 | 879 | 41.9 | Plus |
CG18748-PB | 359 | CG18748-PB | 1..340 | 1..397 | 720 | 37.3 | Plus |