Clone Sequence Records
BO15136.3prime Sequence
774 bp (692 high quality bases) assembled on 2006-05-29
> BO15136.3prime
ATGGTCTAGAAAGCTTGCCATAATGTGGGTGGCCGTGCTGATGACCTGGT
TGATCCACTCCGTGAAGGCGGAGACGCGAACAAAGACCGAGGGCGCGTTC
TTCTGGCCGCATGGCATCTTGCCCCAGGACACAATGCCGATGACAATGTT
GGCCTGCTCGAAGTGCTCCTCGCAGCACTGCTGAATCAATGGTCCGCCGG
AGTCGGCGGTGCAGATGCTAACGCCTCCTGTCAGCGGGCCAGTGCACAGA
TTGGTCTCGTGCAATGGGAGTCCGGAGCGGGCGAGAATCTGTTCGCATAA
CTCCATGTCCAGTATGGGCATGTTGGCCTCCTGCAGGCGGTGCGGATAAT
TGGGTACCGCAGTCATCGAGACATTGCCCCAGCCGTACAAAGTTCCATAT
CCCTCCGGCTGGGCATCCTGCTCCGGCAGCGTTGCTGGCTGGACATAGGT
GTCAAAGACCAGGGGCTCCTTGGTGTAAATTAGCGCGATGTCGTAGGGAT
TCACTCCGCCGAGATAGAGCTCGTGTCGCACGTAGTAGTCGATGTGTCGC
ATTTGAATGTTGCTCGCCTCGCCCTTCTGATCGTGAATATCGTGGCTGCC
CGCCACAATGACCGAGTTCTCCACCGCCTGCGGTGAGCTGAGGCAGTGGG
CCGCCGTCAGGATCCAGTGCTCGTTGATGATGGTGCCGGCACAGTAGTGG
ACCAGTCCCTGATCGGGTGTCATCATCTGGATGCTGACCACATACGGCGC
CCAATGGGGAGTCGCCTCCCGCTT
BO15136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-PA | 1005 | CG7142-RA | 247..1002 | 774..19 | 3755 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1342 | CG7142-RA | 484..1239 | 774..19 | 3765 | 99.9 | Minus |
Phae1-RB | 1248 | CG16996-RB | 838..904 | 256..190 | 185 | 85.1 | Minus |
Phae1-RA | 904 | CG16996-RA | 636..702 | 256..190 | 185 | 85.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18278284..18279039 | 19..774 | 3765 | 99.9 | Plus |
2L | 23513712 | 2L | 12110254..12110320 | 256..190 | 185 | 85.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:39:57 has no hits.
BO15136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:26 Download gff for
BO15136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 247..1005 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:49 Download gff for
BO15136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 247..1005 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:41:19 Download gff for
BO15136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 492..1251 | 14..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:21 Download gff for
BO15136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 484..1243 | 14..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:21 Download gff for
BO15136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18278280..18279039 | 14..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:41:19 Download gff for
BO15136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14104002..14104761 | 14..774 | 99 | | Plus |
BO15136.5prime Sequence
827 bp (706 high quality bases) assembled on 2006-06-16
> BO15136.5prime
GAAGTTATCAGTCGACATGCTCTTATCCTACCGATGCATCTACTCGGTGC
TGCTGTCCACCATAGCCAGTATTATGGTGGTACTAAGCTCTGCATCCTCC
GGCTCCATACAGCTGCCCACTGTGCGCAAGTGCGGCGGTGGCAGATCTGC
GGGAGCAGCCCACACAATGGCCATGAATTTGGCGGCCTACGGGCTGCTGG
AGAATCGGATTAGCACTCTGGAAGCACCGCGACAAACGCACTGGACGAAA
AAGTTCCTGGCCAAGCGGGAGGCGACTCCCCATTCGGCGCCGTATGTGGT
CAGCATCCAGATGATGACACCCGATCAGGGACTGGTCCACTACTGTGCCG
GCACCATCATCAACGAGCACTGGATCCTGACGGCGGCCCACTGCCTCAGC
TCACCGCAGGCGGTGGAGAACTCGGTCATTGTGGCGGGCAGCCACGATAT
TCACGATCAGAAGGGCGAGGCGAGCAACATTCAAATGCGACACATCGACT
ACTACGTGCGACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATC
GCGCTAATTTACACCAAGGAGCCCCTGGTCTTTGACACCTATGTCCAGCC
AGCAACGCTGCCGGAGCAGGATGCCCAGCCGGAGGGATATGGAACTTTGT
ACGGCTGGGGCAATGTCTCGATGACTGCGGTACCCAATTATCCGCACCGC
CTGCAGGAGGCCAACATGCCCATACTGGACATGGAGTTATGCGAACAGAT
TCTCGCCCGCTCCGGACTCCCATTGCACGAGACCAATCTGTGCACTGGCC
CGCTGACAGGAGGCGTTAGCATCTGCA
BO15136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-PA | 1005 | CG7142-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1342 | CG7142-RA | 237..1048 | 16..827 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18278475..18279286 | 827..16 | 4060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:32:25 has no hits.
BO15136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:42:27 Download gff for
BO15136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:43:50 Download gff for
BO15136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:31 Download gff for
BO15136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 245..1055 | 16..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:27 Download gff for
BO15136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 237..1047 | 16..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:27 Download gff for
BO15136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18278476..18279286 | 16..826 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:31 Download gff for
BO15136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14104198..14105008 | 16..826 | 100 | | Minus |
BO15136.complete Sequence
1036 bp (1036 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633355
> BO15136.complete
GAAGTTATCAGTCGACATGCTCTTATCCTACCGATGCATCTACTCGGTGC
TGCTGTCCACCATAGCCAGTATTATGGTGGTACTAAGCTCTGCATCCTCC
GGCTCCATACAGCTGCCCACTGTGCGCAAGTGCGGCGGTGGCAGATCTGC
GGGAGCAGCCCACACAATGGCCATGAATTTGGCGGCCTACGGGCTGCTGG
AGAATCGGATTAGCACTCTGGAAGCACCGCGACAAACGCACTGGACGAAA
AAGTTCCTGGCCAAGCGGGAGGCGACTCCCCATTCGGCGCCGTATGTGGT
CAGCATCCAGATGATGACACCCGATCAGGGACTGGTCCACTACTGTGCCG
GCACCATCATCAACGAGCACTGGATCCTGACGGCGGCCCACTGCCTCAGC
TCACCGCAGGCGGTGGAGAACTCGGTCATTGTGGCGGGCAGCCACGATAT
TCACGATCAGAAGGGCGAGGCGAGCAACATTCAAATGCGACACATCGACT
ACTACGTGCGACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATC
GCGCTAATTTACACCAAGGAGCCCCTGGTCTTTGACACCTATGTCCAGCC
AGCAACGCTGCCGGAGCAGGATGCCCAGCCGGAGGGATATGGAACTTTGT
ACGGCTGGGGCAATGTCTCGATGACTGCGGTACCCAATTATCCGCACCGC
CTGCAGGAGGCCAACATGCCCATACTGGACATGGAGTTATGCGAACAGAT
TCTCGCCCGCTCCGGACTCCCATTGCACGAGACCAATCTGTGCACTGGCC
CGCTGACAGGAGGCGTTAGCATCTGCACCGCCGACTCCGGCGGACCATTG
ATTCAGCAGTGCTGCGAGGAGCACTTCGAGCAGGCCAACATTGTCATCGG
CATTGTGTCCTGGGGCAAGATGCCATGCGGCCAGAAGAACGCGCCCTCGG
TCTTTGTTCGCGTCTCCGCCTTCACGGAGTGGATCAACCAGGTCATCAGC
ACGGCCACCCACATTATGGCAAGCTTTCTAGACCAT
BO15136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1005 | CG7142-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Phae1-RB | 813 | CG16996-PB | 612..678 | 781..847 | 185 | 85.1 | Plus |
Phae1-RA | 813 | CG16996-PA | 612..678 | 781..847 | 185 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1342 | CG7142-RA | 237..1239 | 16..1018 | 5015 | 100 | Plus |
Phae1-RB | 1248 | CG16996-RB | 838..904 | 781..847 | 185 | 85.1 | Plus |
Phae1-RA | 904 | CG16996-RA | 636..702 | 781..847 | 185 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18278284..18279286 | 1018..16 | 5015 | 100 | Minus |
2L | 23513712 | 2L | 12110254..12110320 | 781..847 | 185 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:36:41 has no hits.
BO15136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:23 Download gff for
BO15136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 1..1005 | 17..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:47 Download gff for
BO15136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 245..1251 | 16..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:28 Download gff for
BO15136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 246..1247 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:24 Download gff for
BO15136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 245..1251 | 16..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:03 Download gff for
BO15136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 238..1239 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:03 Download gff for
BO15136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18278282..18279285 | 17..1020 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:28 Download gff for
BO15136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14104004..14105007 | 17..1020 | 99 | | Minus |
BO15136.pep Sequence
Translation from 16 to 1036
> BO15136.pep
MLLSYRCIYSVLLSTIASIMVVLSSASSGSIQLPTVRKCGGGRSAGAAHT
MAMNLAAYGLLENRISTLEAPRQTHWTKKFLAKREATPHSAPYVVSIQMM
TPDQGLVHYCAGTIINEHWILTAAHCLSSPQAVENSVIVAGSHDIHDQKG
EASNIQMRHIDYYVRHELYLGGVNPYDIALIYTKEPLVFDTYVQPATLPE
QDAQPEGYGTLYGWGNVSMTAVPNYPHRLQEANMPILDMELCEQILARSG
LPLHETNLCTGPLTGGVSICTADSGGPLIQQCCEEHFEQANIVIGIVSWG
KMPCGQKNAPSVFVRVSAFTEWINQVISTATHIMASFLDH
BO15136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-PA | 334 | CG7142-PA | 1..334 | 1..334 | 1768 | 100 | Plus |
Phae1-PB | 270 | CG16996-PB | 42..270 | 86..328 | 607 | 50.4 | Plus |
Phae1-PA | 270 | CG16996-PA | 42..270 | 86..328 | 607 | 50.4 | Plus |
Phae2-PC | 265 | CG16997-PC | 36..259 | 84..323 | 597 | 49.4 | Plus |
Phae2-PB | 265 | CG16997-PB | 36..259 | 84..323 | 597 | 49.4 | Plus |