Clone Sequence Records
BO15137.3prime Sequence
689 bp (689 high quality bases) assembled on 2006-06-16
> BO15137.3prime
ATGGTCTAGAAAGCTTGCCTTCGATTCCGCCACCTCCACGGGCACCTCCT
GGATAATACTTCTCGCTGAGGATAGTACACTGATATCAGCGCAGTTAATA
AAGGTTTCCTGCGCCCCACAACCCATGGCGCCCGTCCCATCCTCACAAAC
ACCCCAATTATTTCCCGCCGTGTAAGTCCAGCGCAAAACGCAATGAATGC
AGTTGAGATCACTGGGCAGTTTCACGGTTACTGGGATATCGCCAGTGGTG
GTGTTAATGTAGTACTTCTGGCTACCGTCGGTGAAATTCAAAGGATATTG
GTTAAAGCAATCCTCCGACTCGCTGCCATTTTCGTCCAAATCGCAGATGT
GGAAGCGGAAGTAGCCCAGATGATTGGCTGTGATCTTAACATTAATTTCC
GCTTCATCTACTCCGGCAAAGCTCTTTACAATCACTCCACTGCCATATTT
TCCACCCAACTCATTGGGTCGCGGCTGCTCCAAGCTCCAGTCGTCTCCGC
ACAGTCCACATTTGCCATCATTTTCGGTTTGTTTCCAAAATCCACCGCAA
TATAATGCATTGTCATCGTAGTTTGTTGGCGCCGAGTTATCGTAGCGCCA
ACGCGAGGATCTTCCGGTTGGACTTAACATCATACCGTGGCCCTCCAGTT
CACCCATCCGGTTTAAAAAACCCATGTCGACTGATAACT
BO15137.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4367-PA | 660 | CG4367-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4367-RB | 939 | CG4367-RB | 32..689 | 676..19 | 3290 | 100 | Minus |
CG4367-RA | 816 | CG4367-RA | 32..689 | 676..19 | 3290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20304205..20304725 | 19..539 | 2590 | 99.8 | Plus |
3R | 32079331 | 3R | 20304782..20304923 | 535..676 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:44:45 has no hits.
BO15137.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:37 Download gff for
BO15137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-PA | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:17 Download gff for
BO15137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 26..689 | 19..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:39:09 Download gff for
BO15137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 26..689 | 19..684 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:39:09 Download gff for
BO15137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20304205..20304720 | 19..534 | 100 | <- | Plus |
3R | 20304782..20304929 | 535..684 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:17 Download gff for
BO15137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16129927..16130442 | 19..534 | 100 | <- | Plus |
arm_3R | 16130504..16130651 | 535..684 | 97 | | Plus |
BO15137.5prime Sequence
689 bp (671 high quality bases) assembled on 2006-06-16
> BO15137.5prime
GAAGTTATCAGTCGACATGGGTTTTTTAAACCGGATGGGTGAACTGGAGG
GCCACGGTATGATGTTAAGTCCAACCGGAAGATCCTCGCGTTGGCGCTAC
GATAACTCGGCGCCAACAAACTACGATGACAATGCATTATATTGCGGTGG
ATTTTGGAAACAAACCGAAAATGATGGCAAATGTGGACTGTGCGGAGACG
ACTGGAGCTTGGAGCAGCCGCGACCCAATGAGTTGGGTGGAAAATATGGC
AGTGGAGTGATTGTAAAGAGCTTTGCCGGAGTAGATGAAGCGGAAATTAA
TGTTAAGATCACAGCCAATCATCTGGGCTACTTCCGCTTCCACATCTGCG
ATTTGGACGAAAATGGCAGCGAGTCGGAGGATTGCTTTAACCAATATCCT
TTGAATTTCACCGACGGTAGCCAGAAGTACTACATTAACACCACCACTGG
CGATATCCCAGTAACCGTGAAACTGCCCAGTGATCTCAACTGCATTCATT
GCGTTTTGCGCTGGACTTACACGGCGGGAAATAATTGGGGTGTTTGTGAG
GATGGGACGGGCGCCATGGGTTGTGGGGCGCAGGAAACCTTTATTAACTG
CGCTGATATCAGTGTACTATCCTCAGCGAGAAGTATTATCCAGGAGGTGC
CCGTGGAGGTGGCGGAATCGAAGGCAAGCTTTCTAGACC
BO15137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4367-PA | 660 | CG4367-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4367-RB | 939 | CG4367-RB | 32..689 | 16..673 | 3290 | 100 | Plus |
CG4367-RA | 816 | CG4367-RA | 32..689 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20304205..20304725 | 673..153 | 2590 | 99.8 | Minus |
3R | 32079331 | 3R | 20304782..20304923 | 157..16 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:14:54 has no hits.
BO15137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:37 Download gff for
BO15137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:40 Download gff for
BO15137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 26..689 | 8..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:51 Download gff for
BO15137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 26..689 | 8..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:51 Download gff for
BO15137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20304205..20304720 | 158..673 | 100 | <- | Minus |
3R | 20304782..20304929 | 8..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:40 Download gff for
BO15137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16129927..16130442 | 158..673 | 100 | <- | Minus |
arm_3R | 16130504..16130651 | 8..157 | 97 | | Minus |
BO15137.complete Sequence
691 bp (691 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633356
> BO15137.complete
GAAGTTATCAGTCGACATGGGTTTTTTAAACCGGATGGGTGAACTGGAGG
GCCACGGTATGATGTTAAGTCCAACCGGAAGATCCTCGCGTTGGCGCTAC
GATAACTCGGCGCCAACAAACTACGATGACAATGCATTATATTGCGGTGG
ATTTTGGAAACAAACCGAAAATGATGGCAAATGTGGACTGTGCGGAGACG
ACTGGAGCTTGGAGCAGCCGCGACCCAATGAGTTGGGTGGAAAATATGGC
AGTGGAGTGATTGTAAAGAGCTTTGCCGGAGTAGATGAAGCGGAAATTAA
TGTTAAGATCACAGCCAATCATCTGGGCTACTTCCGCTTCCACATCTGCG
ATTTGGACGAAAATGGCAGCGAGTCGGAGGATTGCTTTAACCAATATCCT
TTGAATTTCACCGACGGTAGCCAGAAGTACTACATTAACACCACCACTGG
CGATATCCCAGTAACCGTGAAACTGCCCAGTGATCTCAACTGCATTCATT
GCGTTTTGCGCTGGACTTACACGGCGGGAAATAATTGGGGTGTTTGTGAG
GATGGGACGGGCGCCATGGGTTGTGGGGCGCAGGAAACCTTTATTAACTG
CGCTGATATCAGTGTACTATCCTCAGCGAGAAGTATTATCCAGGAGGTGC
CCGTGGAGGTGGCGGAATCGAAGGCAAGCTTTCTAGACCAT
BO15137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4367-RB | 660 | CG4367-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
CG4367-RA | 660 | CG4367-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4367-RB | 939 | CG4367-RB | 32..689 | 16..673 | 3290 | 100 | Plus |
CG4367-RA | 816 | CG4367-RA | 32..689 | 16..673 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20304205..20304725 | 673..153 | 2590 | 99.8 | Minus |
3R | 32079331 | 3R | 20304782..20304923 | 157..16 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:26:58 has no hits.
BO15137.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:59 Download gff for
BO15137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:45 Download gff for
BO15137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 26..689 | 8..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:08 Download gff for
BO15137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 33..689 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:00 Download gff for
BO15137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 26..689 | 8..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:41 Download gff for
BO15137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4367-RA | 33..689 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:41 Download gff for
BO15137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20304202..20304720 | 158..675 | 99 | <- | Minus |
3R | 20304782..20304922 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:08 Download gff for
BO15137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16129924..16130442 | 158..675 | 99 | <- | Minus |
arm_3R | 16130504..16130644 | 17..157 | 100 | | Minus |
BO15137.pep Sequence
Translation from 16 to 691
> BO15137.pep
MGFLNRMGELEGHGMMLSPTGRSSRWRYDNSAPTNYDDNALYCGGFWKQT
ENDGKCGLCGDDWSLEQPRPNELGGKYGSGVIVKSFAGVDEAEINVKITA
NHLGYFRFHICDLDENGSESEDCFNQYPLNFTDGSQKYYINTTTGDIPVT
VKLPSDLNCIHCVLRWTYTAGNNWGVCEDGTGAMGCGAQETFINCADISV
LSSARSIIQEVPVEVAESKASFLDH
BO15137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4367-PB | 219 | CG4367-PB | 1..219 | 1..219 | 1211 | 100 | Plus |
CG4367-PA | 219 | CG4367-PA | 1..219 | 1..219 | 1211 | 100 | Plus |
CG4362-PA | 233 | CG4362-PA | 17..233 | 9..216 | 635 | 53.2 | Plus |
CG42598-PB | 340 | CG42598-PB | 29..224 | 12..200 | 452 | 42 | Plus |
CG42749-PB | 285 | CG15786-PA | 29..248 | 7..223 | 448 | 37.2 | Plus |